pycom08g01240

tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
923355 .. 926488
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g01240.2

Sequence Viewer

Length: 1314 bp
ATGGAGATTTCTGAAAGTAAACCCCAAATCGATTCATCTGAAAACCCTAGGTCCACCTGGGACGGTTGCTCCGTCTTGCTCGACATCAACGACGGCGACCGTCTGGTTTTCGCCCGCCTCTCCGCCGGAGCGAAATTGAAAATTGGGAATAAGAATTGCTCTCTGCAGCCTTTGATTGGCTGCCCCTTCGGCTCTTTCTTTCGGGTCGAAAATGGAGCCGAAGGCCCGTATTTGGCCGGGTACACTCCGTCCACGGAAGTTAATAATGTTCAAGAAAAAGGTGATGGTCAATCAATTGATGAGTTTAGAGATAATCGAGCATTAGTCGATAACAATAAAGCGCAGAGCCTAACCGGAGAAGACATTAACGCAATGCGACAACAGGGTGCAACGGGTGATGAAATAGTTGAAGCTCTCATTGCAAACAGTGCGACGTTTGAGAAGAAAACTGTTTTCTCACAGGAGAAATATAGGCTTAAGAAGCAAAAGAAATATGCTCCCGTTGTACTTATGAGGCGCCCATTCACTAGAAGATTCTTGCGAATGGACACATTGTCTCTTCTGCTTTCCTTGGCTAATGTTTCTGCAAATTCTGATGTCCTGGTAGTGGATATGGTTGGAGGACTTCTCACTGGTGCTGTAGCAGAGCGTTTAGGAGGTACGGGCTATGTCTGCAATACATATCTTAGTGGGTCGCCTTATTCTATGGATATAGCGAGGATATTCAACTTTGGAGATGAAATTTGCAAGAGGATTGTGAGGTCTCCTCTCGCGGACCTTTTATCTGTCCGAAACGGAATTGAAAAACCAGCAAGTCAGGAAGCAGAGTCTGGTAATATGGAAATTCAGTCAAATGACCAAATTTCTTCAGCAGTTAGCATGGAAGAAGCATCTCTTACATCTGAAAATGTGATATCGGATCCTATTCCTGTGTCTACCAGTTCTCCAGTAATTAAAATGTCCAAACCAGCAAAATTGGGAGAAAAAGCACCACAGGAAATCATTAGCTCGTGGAAAGAGAATGGTTTCTCTAGTTTAATAATAGCTGCACCGGAGCTGGATGCTTGGGGCTTAGTTAAGGAGATCTTGCCACTTATGTCAAATTCTGCTCCTTTTGCTATTTTTCATCAGTATCTGCAGCCTCTTGCAACATGCATGCACAATCTACAAACGGGGAAAATGGCGATTGGCATGCAAATTTCAGAACCTTGGTTACGTGAATATCAGGTACTTCCATCAAGAACGCATCCATGCATGCAGATGAATGGATTCGCCGGGTACATTCTCAGTGGGACCAAGATTTTACCAACCTGA

Protein Analysis

438

Amino Acids

47.73

Weight (kDa)

5.42

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45730
fragaria_vesca FvH4_2g38570
malus_domestica MD08G1013700.v1.1 MD15G1013300.v1.1
prunus_persica Prupe.1G366700_v2.0.a1
pyrus_communis pycom08g01240
rosa_chinensis RchiOBHm_Chr6g0302731
rosa_laevigata RLG00000011143
rosa_multiflora Rmu_sc0009897.1_g000006
rosa_roxburghii Rroxscaffold_7G00165370
rosa_rugosa Rorug06G0316600
rosa_samantha Rh6AG429900 Rh6BG472600 Rh6CG442400 Rh6DG429100
rosa_wichuraiana Rw6G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 516
AccI GTMKAC 1 cut(s) 935
AccII CGCG 1 cut(s) 773
AciI CCGC 3 cut(s) 115, 123, 773
AclWI GGATC 2 cut(s) 914, 927
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 6 cut(s) 589, 741, 843, 861, 1102, 1197
AcuI CTGAAG 1 cut(s) 852
AcyI GRCGYC 1 cut(s) 517
AfaI GTAC 5 cut(s) 242, 507, 661, 1230, 1280
AfiI CCNNNNNNNGG 3 cut(s) 176, 232, 607
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 5 cut(s) 139, 272, 410, 727, 803
AhdI GACNNNNNGTC 1 cut(s) 553
AjnI CCWGG 2 cut(s) 56, 600
AluBI AGCT 4 cut(s) 413, 1008, 1046, 1057
AluI AGCT 4 cut(s) 413, 1008, 1046, 1057
Alw26I GTCTC 2 cut(s) 561, 768
AlwI GGATC 2 cut(s) 914, 927
AlwNI CAGNNNCTG 2 cut(s) 830, 1135
AoxI GGCC 2 cut(s) 223, 234
ApeKI GCWGC 4 cut(s) 166, 180, 1046, 1138
ApoI RAATTY 6 cut(s) 589, 741, 843, 861, 1102, 1197
Asp700I GAANNNNTTC 2 cut(s) 1025, 1268
AspA2I CCTAGG 1 cut(s) 47
AspLEI GCGC 2 cut(s) 343, 519
AspS9I GGNCC 4 cut(s) 51, 224, 775, 1293
AsuC2I CCSGG 2 cut(s) 238, 1276
AsuHPI GGTGA 2 cut(s) 293, 407
AvaII GGWCC 3 cut(s) 51, 775, 1293
AvrII CCTAGG 1 cut(s) 47
BamHI GGATCC 1 cut(s) 919
BanI GGYRCC 1 cut(s) 516
BauI CACGAG 1 cut(s) 1009
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 4 cut(s) 167, 178, 1033, 1150
BccI CCATC 2 cut(s) 278, 1243
BceAI ACGGC 1 cut(s) 109
BcgI CGANNNNNNTGC 2 cut(s) 1174, 1208
BciT130I CCWGG 2 cut(s) 58, 602
BcnI CCSGG 2 cut(s) 238, 1276
BcoDI GTCTC 2 cut(s) 561, 768
BfaI CTAG 3 cut(s) 48, 528, 1032
BfmI CTRYAG 3 cut(s) 164, 639, 1136
BfoI RGCGCY 1 cut(s) 520
BfrI CTTAAG 1 cut(s) 476
BglI GCCNNNNNGGC 1 cut(s) 189
BglII AGATCT 1 cut(s) 1083
BisI GCNGC 4 cut(s) 167, 181, 1047, 1139
BlnI CCTAGG 1 cut(s) 47
BlsI GCNGC 4 cut(s) 168, 182, 1048, 1140
Bme1390I CCNGG 4 cut(s) 58, 238, 602, 1276
Bme18I GGWCC 3 cut(s) 51, 775, 1293
BmeRI GACNNNNNGTC 1 cut(s) 553
BmgT120I GGNCC 4 cut(s) 51, 224, 775, 1293
BmiI GGNNCC 4 cut(s) 217, 518, 921, 1294
BmrFI CCNGG 4 cut(s) 58, 238, 602, 1276
BmsI GCATC 3 cut(s) 899, 1051, 1255
BpiI GAAGAC 1 cut(s) 366
BplI GAGNNNNNCTC 4 cut(s) 612, 644, 751, 783
BpmI CTGGAG 1 cut(s) 930
BpuMI CCSGG 2 cut(s) 238, 1276
Bsa29I ATCGAT 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 1217
BsaHI GRCGYC 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 768
BsaJI CCNNGG 5 cut(s) 47, 57, 252, 570, 1208
BsaWI WCCGGW 2 cut(s) 353, 1051
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 928, 958
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 232, 607
Bse1I ACTGG 3 cut(s) 637, 939, 947
Bse3DI GCAATG 2 cut(s) 378, 417
BseBI CCWGG 2 cut(s) 58, 602
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 5 cut(s) 47, 57, 252, 570, 1208
BseGI GGATG 2 cut(s) 1066, 1246
BseLI CCNNNNNNNGG 3 cut(s) 176, 232, 607
BseMI GCAATG 2 cut(s) 378, 417
BseMII CTCAG 1 cut(s) 1300
BseNI ACTGG 3 cut(s) 637, 939, 947
BseRI GAGGAG 1 cut(s) 756
BseXI GCAGC 4 cut(s) 167, 178, 1033, 1150
BsgI GTGCAG 1 cut(s) 1032
Bsh1236I CGCG 1 cut(s) 773
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 2 cut(s) 225, 236
BshNI GGYRCC 1 cut(s) 516
BshVI ATCGAT 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 100
BsiSI CCGG 5 cut(s) 126, 237, 354, 1052, 1275
BslFI GGGAC 2 cut(s) 74, 1306
BslI CCNNNNNNNGG 3 cut(s) 176, 232, 607
BsmAI GTCTC 2 cut(s) 561, 768
BsmFI GGGAC 2 cut(s) 74, 1306
BsnI GGCC 2 cut(s) 225, 236
Bso31I GGTCTC 1 cut(s) 768
Bsp143I GATC 2 cut(s) 919, 1083
BspACI CCGC 3 cut(s) 115, 123, 773
BspANI GGCC 2 cut(s) 225, 236
BspCNI CTCAG 1 cut(s) 1299
BspDI ATCGAT 1 cut(s) 30
BspFNI CGCG 1 cut(s) 773
BspLI GGNNCC 4 cut(s) 217, 518, 921, 1294
BspMAI CTGCAG 2 cut(s) 168, 1140
BspPI GGATC 2 cut(s) 914, 927
BspT107I GGYRCC 1 cut(s) 516
BspTI CTTAAG 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 768
BsrDI GCAATG 2 cut(s) 378, 417
BsrI ACTGG 3 cut(s) 637, 939, 947
BssECI CCNNGG 5 cut(s) 47, 57, 252, 570, 1208
BssMI GATC 2 cut(s) 919, 1083
BssNI GRCGYC 1 cut(s) 517
BssSI CACGAG 1 cut(s) 1009
BssT1I CCWWGG 3 cut(s) 47, 570, 1208
Bst2BI CACGAG 1 cut(s) 1009
Bst2UI CCWGG 2 cut(s) 58, 602
Bst4CI ACNGT 4 cut(s) 65, 101, 428, 451
Bst6I CTCTTC 1 cut(s) 564
BstACI GRCGYC 1 cut(s) 517
BstAFI CTTAAG 1 cut(s) 476
BstAPI GCANNNNNTGC 1 cut(s) 428
BstBAI YACGTR 1 cut(s) 1217
BstC8I GCNNGC 4 cut(s) 115, 1157, 1193, 1256
BstDEI CTNAG 3 cut(s) 686, 1072, 1286
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 1066, 1246
BstFNI CGCG 1 cut(s) 773
BstH2I RGCGCY 1 cut(s) 520
BstHHI GCGC 2 cut(s) 343, 519
BstKTI GATC 2 cut(s) 922, 1086
BstMAI GTCTC 2 cut(s) 561, 768
BstMBI GATC 2 cut(s) 919, 1083
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 6 cut(s) 189, 419, 428, 481, 672, 1115
BstNI CCWGG 2 cut(s) 58, 602
BstNSI RCATGY 4 cut(s) 1155, 1159, 1195, 1258
BstSCI CCNGG 4 cut(s) 56, 236, 600, 1274
BstSFI CTRYAG 3 cut(s) 164, 639, 1136
BstUI CGCG 1 cut(s) 773
BstV1I GCAGC 4 cut(s) 167, 178, 1033, 1150
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 2 cut(s) 919, 1083
BstYI RGATCY 2 cut(s) 919, 1083
Bsu15I ATCGAT 1 cut(s) 30
BsuRI GGCC 2 cut(s) 225, 236
BsuTUI ATCGAT 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 1066, 1246
BtsIMutI CAGTG 3 cut(s) 433, 630, 1294
Cac8I GCNNGC 4 cut(s) 115, 1157, 1193, 1256
CaiI CAGNNNCTG 2 cut(s) 830, 1135
CfoI GCGC 2 cut(s) 343, 519
Cfr13I GGNCC 4 cut(s) 51, 224, 775, 1293
ClaI ATCGAT 1 cut(s) 30
Csp6I GTAC 5 cut(s) 241, 506, 660, 1229, 1279
CviAII CATG 6 cut(s) 880, 1152, 1156, 1192, 1251, 1255
CviQI GTAC 5 cut(s) 241, 506, 660, 1229, 1279
DdeI CTNAG 3 cut(s) 686, 1072, 1286
DinI GGCGCC 1 cut(s) 518
DpnI GATC 2 cut(s) 921, 1085
DpnII GATC 2 cut(s) 919, 1083
DriI GACNNNNNGTC 1 cut(s) 553
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 564
Eam1105I GACNNNNNGTC 1 cut(s) 553
EarI CTCTTC 1 cut(s) 564
EciI GGCGGA 1 cut(s) 112
Eco130I CCWWGG 3 cut(s) 47, 570, 1208
Eco31I GGTCTC 1 cut(s) 768
Eco32I GATATC 1 cut(s) 915
Eco47I GGWCC 3 cut(s) 51, 775, 1293
Eco57I CTGAAG 1 cut(s) 852
EcoRII CCWGG 2 cut(s) 56, 600
EcoRV GATATC 1 cut(s) 915
EcoT14I CCWWGG 3 cut(s) 47, 570, 1208
EcoT22I ATGCAT 2 cut(s) 1157, 1256
EgeI GGCGCC 1 cut(s) 518
EheI GGCGCC 1 cut(s) 518
ErhI CCWWGG 3 cut(s) 47, 570, 1208
FaeI CATG 6 cut(s) 883, 1155, 1159, 1195, 1254, 1258
FalI AAGNNNNNCTT 4 cut(s) 879, 911, 1070, 1102
FaqI GGGAC 2 cut(s) 74, 1306
FatI CATG 6 cut(s) 879, 1151, 1155, 1191, 1250, 1254
FauI CCCGC 1 cut(s) 122
FblI GTMKAC 1 cut(s) 935
Fnu4HI GCNGC 4 cut(s) 167, 181, 1047, 1139
FokI GGATG 2 cut(s) 1073, 1233
Fsp4HI GCNGC 4 cut(s) 167, 181, 1047, 1139
FspBI CTAG 3 cut(s) 48, 528, 1032
GlaI GCGC 2 cut(s) 342, 518
GluI GCNGC 4 cut(s) 167, 181, 1047, 1139
GsuI CTGGAG 1 cut(s) 930
HaeII RGCGCY 1 cut(s) 520
HaeIII GGCC 2 cut(s) 225, 236
HapII CCGG 5 cut(s) 126, 237, 354, 1052, 1275
HhaI GCGC 2 cut(s) 343, 519
Hin1I GRCGYC 1 cut(s) 517
Hin1II CATG 6 cut(s) 883, 1155, 1159, 1195, 1254, 1258
Hin6I GCGC 2 cut(s) 341, 517
HinP1I GCGC 2 cut(s) 341, 517
HinfI GANTC 4 cut(s) 32, 534, 827, 1269
HpaII CCGG 5 cut(s) 126, 237, 354, 1052, 1275
HphI GGTGA 2 cut(s) 293, 407
Hpy166II GTNNAC 5 cut(s) 20, 54, 243, 252, 936
Hpy188I TCNGA 7 cut(s) 13, 40, 595, 791, 904, 919, 1204
Hpy188III TCNNGA 3 cut(s) 272, 818, 1239
Hpy8I GTNNAC 5 cut(s) 20, 54, 243, 252, 936
Hpy99I CGWCG 2 cut(s) 95, 436
HpyAV CCTTC 2 cut(s) 196, 215
HpyCH4III ACNGT 4 cut(s) 65, 101, 428, 451
HpyCH4IV ACGT 2 cut(s) 434, 1216
HpyF10VI GCNNNNNNNGC 6 cut(s) 189, 419, 428, 481, 672, 1115
HpyF3I CTNAG 3 cut(s) 686, 1072, 1286
HpySE526I ACGT 2 cut(s) 434, 1216
Hsp92I GRCGYC 1 cut(s) 517
Hsp92II CATG 6 cut(s) 883, 1155, 1159, 1195, 1254, 1258
HspAI GCGC 2 cut(s) 341, 517
KasI GGCGCC 1 cut(s) 516
Kzo9I GATC 2 cut(s) 919, 1083
LmnI GCTCC 6 cut(s) 74, 128, 215, 502, 1054, 1114
Lsp1109I GCAGC 4 cut(s) 167, 178, 1033, 1150
LweI GCATC 3 cut(s) 899, 1051, 1255
MaeI CTAG 3 cut(s) 48, 528, 1032
MaeII ACGT 2 cut(s) 434, 1216
MaeIII GTNAC 1 cut(s) 1212
MalI GATC 2 cut(s) 921, 1085
MboI GATC 2 cut(s) 919, 1083
MboII GAAGA 6 cut(s) 371, 454, 543, 551, 858, 896
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 2 cut(s) 919, 1083
Mly113I GGCGCC 1 cut(s) 517
MlyI GAGTC 1 cut(s) 836
MmeI TCCRAC 1 cut(s) 598
MnlI CCTC 9 cut(s) 128, 507, 614, 650, 711, 744, 753, 777, 1152
Mph1103I ATGCAT 2 cut(s) 1157, 1256
MroXI GAANNNNTTC 2 cut(s) 1025, 1268
MseI TTAA 6 cut(s) 261, 366, 477, 954, 1037, 1077
MslI CAYNNNNRTG 1 cut(s) 1259
MspCI CTTAAG 1 cut(s) 476
MspI CCGG 5 cut(s) 126, 237, 354, 1052, 1275
MspR9I CCNGG 4 cut(s) 58, 238, 602, 1276
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 2 cut(s) 58, 602
MvnI CGCG 1 cut(s) 773
MwoI GCNNNNNNNGC 6 cut(s) 189, 419, 428, 481, 672, 1115
NarI GGCGCC 1 cut(s) 517
NciI CCSGG 2 cut(s) 238, 1276
NdeII GATC 2 cut(s) 919, 1083
NlaIII CATG 6 cut(s) 883, 1155, 1159, 1195, 1254, 1258
NlaIV GGNNCC 4 cut(s) 217, 518, 921, 1294
NsiI ATGCAT 2 cut(s) 1157, 1256
NspI RCATGY 4 cut(s) 1155, 1159, 1195, 1258
PaeI GCATGC 3 cut(s) 1159, 1195, 1258
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 87
PdmI GAANNNNTTC 2 cut(s) 1025, 1268
PfeI GAWTC 3 cut(s) 32, 534, 1269
PkrI GCNGC 4 cut(s) 168, 182, 1048, 1140
PleI GAGTC 1 cut(s) 835
PluTI GGCGCC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 835
Ppu21I YACGTR 1 cut(s) 1217
Psp6I CCWGG 2 cut(s) 56, 600
PspGI CCWGG 2 cut(s) 56, 600
PspN4I GGNNCC 4 cut(s) 217, 518, 921, 1294
PspPI GGNCC 4 cut(s) 51, 224, 775, 1293
PsrI GAACNNNNNNTAC 2 cut(s) 1197, 1229
PstI CTGCAG 2 cut(s) 168, 1140
PstNI CAGNNNCTG 2 cut(s) 830, 1135
PsuI RGATCY 2 cut(s) 919, 1083
RsaI GTAC 5 cut(s) 242, 507, 661, 1230, 1280
RsaNI GTAC 5 cut(s) 241, 506, 660, 1229, 1279
RseI CAYNNNNRTG 1 cut(s) 1259
SaqAI TTAA 6 cut(s) 261, 366, 477, 954, 1037, 1077
SatI GCNGC 4 cut(s) 167, 181, 1047, 1139
Sau3AI GATC 2 cut(s) 919, 1083
Sau96I GGNCC 4 cut(s) 51, 224, 775, 1293
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 4 cut(s) 58, 238, 602, 1276
SfaNI GCATC 3 cut(s) 899, 1051, 1255
SfcI CTRYAG 3 cut(s) 164, 639, 1136
SfoI GGCGCC 1 cut(s) 518
SinI GGWCC 3 cut(s) 51, 775, 1293
SmiMI CAYNNNNRTG 1 cut(s) 1259
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SphI GCATGC 3 cut(s) 1159, 1195, 1258
SsiI CCGC 3 cut(s) 115, 123, 773
SspDI GGCGCC 1 cut(s) 516
SspMI CTAG 3 cut(s) 48, 528, 1032
StyD4I CCNGG 4 cut(s) 56, 236, 600, 1274
StyI CCWWGG 3 cut(s) 47, 570, 1208
TaaI ACNGT 4 cut(s) 65, 101, 428, 451
TaiI ACGT 2 cut(s) 437, 1219
TaqI TCGA 5 cut(s) 30, 81, 207, 316, 327
TatI WGTACW 1 cut(s) 505
TfiI GAWTC 3 cut(s) 32, 534, 1269
Tru1I TTAA 6 cut(s) 261, 366, 477, 954, 1037, 1077
Tru9I TTAA 6 cut(s) 261, 366, 477, 954, 1037, 1077
TscAI CASTG 3 cut(s) 433, 637, 1294
TseI GCWGC 4 cut(s) 166, 180, 1046, 1138
TspDTI ATGAA 5 cut(s) 24, 414, 753, 1115, 1277
TspGWI ACGGA 4 cut(s) 61, 237, 269, 810
TspRI CASTG 3 cut(s) 433, 637, 1294
Vha464I CTTAAG 1 cut(s) 476
VpaK11BI GGWCC 3 cut(s) 51, 775, 1293
XapI RAATTY 6 cut(s) 589, 741, 843, 861, 1102, 1197
XceI RCATGY 4 cut(s) 1155, 1159, 1195, 1258
XmaJI CCTAGG 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 935
XmnI GAANNNNTTC 2 cut(s) 1025, 1268
XspI CTAG 3 cut(s) 48, 528, 1032
Zsp2I ATGCAT 2 cut(s) 1157, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.