MD08G1013700.v1.1

tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
1045674 .. 1049352
3679 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1013700.v1.1.491

Sequence Viewer

Length: 1356 bp
ATGGAGATTTCTGAAAGTAAGCCCCAAATCGATTCATCTGAAAAGCCTAGGTCCACCTGGGACGGTTGCTCCGTCTTGCTCGACATCAACGACGGCGACCGTTTGGTTTTCTCCCGCCTCTCCGCCGGAGCGAAATTGAAAATTGGGAATAAGAATTGCTCTCTGCAGCCTTTGATTGGCTGCCCCTTTGGCTCTTTCTTTCGGGTCGAAAATGGAGCCGAAGGCCCGTATTTGGCCCGGTACACTCCGTCCACGGAAGTTAATAATGTTCAAGAAAAAGGTGATGGTCAATCAATTGATGAGTTTAGAGATAATCGAGCATTAGTCGATAACAATAAAGCGCAGAGCCTAACCGGAGAAGACATTAACGCGATGCGACAACAGGGTGCAACGGGGGATGAAATAGTTGAAGCTCTCATTGCAAACAGCGCGACGTTTGAGAAGAAAACTGTTTTCTCACAGGAGAAGTATAGGCTTAAGAAGCAAAAGAAATATGCTCCCATTGTACTTATGAGGCGCCCATTCACTAGAAGTATATGTGAGGCGTACTTAAAGAAGTATCCGAATAAAATTGGATTCTTGCGAATGGATACATTGTCTCTTCTTCTTTCCATGGCTAATGTTTCTGCAAATTCTGATGTCCTCATAGTGGATATGGTTGGAGGACTTCTAACTGGTGCTGTAGCAGAGCGTTTAGGAGGTACGGGCTATGTCTGCAATACATATCTTAGTGGGTCGCCTTATTCTATGGATATATCGAGGATATTCAACTTTGGAGATGAAATTTGCAAGAGGATTGTGAGGTCTCCTCTCGCAGACCTATTATCTGTCCAAAACGGAATTGAAAAACCAGCAAGTCAGGAAGCGGAGTCTGGTAATATGGAAATTCAGTCAAATGACCAAATTTCTTCAGCAGTTAGCATGGAAGAAGCATCTCTTACATCTGAAAATGTGATATCGGATCCTATTCCTCTGTCTACTAGCTCTCCAGTAATTAAAATGTCCAAACCAGCAAAACTGGGAGAAAAAGCACCACAGGAAATCATCAGCTCGTGGAAAGAGAATGGTTTCTCTAGTTTAATAATAGCAGCACCGGAGATGGATGCTTGGAGCTTACTTAAAGAGATCTTGCCACTATTGTCAAACTCTGCTCCATTTGCTATTTTTCATCAGTATCTTCAGCCTCTTGCGACATGCATGCATAATTTACAAACGGGGAAAATGGCGATTGGCTTGCAAATTTCAGAACCTTGGTTGCGCGAATATCAGGTACTTCCATCAAGAACGCATCCATGCATGCAGATGAATAGATTCGGCGGGTACGTTCTCAGCGGGACCAAGATTTCACCGAACTGA

Protein Analysis

452

Amino Acids

49.55

Weight (kDa)

5.87

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gcd10p PF04189 24 - 276 1.6e-58 Gcd10p family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45730
fragaria_vesca FvH4_2g38570
malus_domestica MD08G1013700.v1.1 MD15G1013300.v1.1
prunus_persica Prupe.1G366700_v2.0.a1
pyrus_communis pycom08g01240
rosa_chinensis RchiOBHm_Chr6g0302731
rosa_laevigata RLG00000011143
rosa_multiflora Rmu_sc0009897.1_g000006
rosa_roxburghii Rroxscaffold_7G00165370
rosa_rugosa Rorug06G0316600
rosa_samantha Rh6AG429900 Rh6BG472600 Rh6CG442400 Rh6DG429100
rosa_wichuraiana Rw6G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 516
AccI GTMKAC 1 cut(s) 977
AccII CGCG 3 cut(s) 371, 431, 1260
AciI CCGC 5 cut(s) 115, 123, 866, 1317, 1332
AclWI GGATC 2 cut(s) 956, 969
AcsI RAATTY 5 cut(s) 631, 783, 885, 903, 1239
AcuI CTGAAG 2 cut(s) 894, 1163
AcyI GRCGYC 1 cut(s) 517
AfaI GTAC 6 cut(s) 242, 507, 548, 703, 1272, 1322
AfiI CCNNNNNNNGG 3 cut(s) 176, 232, 649
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 5 cut(s) 139, 272, 410, 769, 845
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 4 cut(s) 413, 984, 1050, 1113
AluI AGCT 4 cut(s) 413, 984, 1050, 1113
Alw26I GTCTC 2 cut(s) 603, 810
AlwI GGATC 2 cut(s) 956, 969
AoxI GGCC 2 cut(s) 223, 234
ApeKI GCWGC 3 cut(s) 166, 180, 1088
ApoI RAATTY 5 cut(s) 631, 783, 885, 903, 1239
Asp700I GAANNNNTTC 2 cut(s) 1067, 1310
AspA2I CCTAGG 1 cut(s) 47
AspLEI GCGC 4 cut(s) 343, 431, 519, 1260
AspS9I GGNCC 4 cut(s) 51, 224, 235, 1335
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 2 cut(s) 293, 1338
AvaII GGWCC 2 cut(s) 51, 1335
AvrII CCTAGG 1 cut(s) 47
BamHI GGATCC 1 cut(s) 961
BanI GGYRCC 1 cut(s) 516
BauI CACGAG 1 cut(s) 1051
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 3 cut(s) 167, 178, 1100
BccI CCATC 3 cut(s) 278, 1093, 1285
BceAI ACGGC 1 cut(s) 109
BcgI CGANNNNNNTGC 4 cut(s) 1180, 1214, 1216, 1250
BciT130I CCWGG 1 cut(s) 58
BciVI GTATCC 2 cut(s) 570, 583
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 603, 810
BfaI CTAG 4 cut(s) 48, 528, 981, 1074
BfmI CTRYAG 2 cut(s) 164, 681
BfoI RGCGCY 1 cut(s) 520
BfrI CTTAAG 1 cut(s) 476
BfuI GTATCC 2 cut(s) 570, 583
BglI GCCNNNNNGGC 1 cut(s) 189
BglII AGATCT 1 cut(s) 1125
BisI GCNGC 3 cut(s) 167, 181, 1089
BlnI CCTAGG 1 cut(s) 47
BlsI GCNGC 3 cut(s) 168, 182, 1090
Bme1390I CCNGG 2 cut(s) 58, 238
Bme18I GGWCC 2 cut(s) 51, 1335
BmgT120I GGNCC 4 cut(s) 51, 224, 235, 1335
BmiI GGNNCC 4 cut(s) 217, 518, 963, 1336
BmrFI CCNGG 2 cut(s) 58, 238
BmrI ACTGGG 1 cut(s) 1028
BmsI GCATC 4 cut(s) 363, 941, 1093, 1297
BmuI ACTGGG 1 cut(s) 1028
BpiI GAAGAC 1 cut(s) 366
BplI GAGNNNNNCTC 2 cut(s) 793, 825
BpmI CTGGAG 1 cut(s) 972
BpuMI CCSGG 1 cut(s) 238
Bsa29I ATCGAT 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 810
BsaJI CCNNGG 5 cut(s) 47, 57, 252, 612, 1250
BsaWI WCCGGW 2 cut(s) 353, 1093
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 970, 1000
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 232, 649
Bse1I ACTGG 3 cut(s) 679, 989, 1023
Bse3DI GCAATG 1 cut(s) 417
BseBI CCWGG 1 cut(s) 58
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 5 cut(s) 47, 57, 252, 612, 1250
BseGI GGATG 3 cut(s) 403, 1108, 1288
BseLI CCNNNNNNNGG 3 cut(s) 176, 232, 649
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 1 cut(s) 1342
BseNI ACTGG 3 cut(s) 679, 989, 1023
BseRI GAGGAG 1 cut(s) 798
BseXI GCAGC 3 cut(s) 167, 178, 1100
Bsh1236I CGCG 3 cut(s) 371, 431, 1260
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 2 cut(s) 225, 236
BshNI GGYRCC 1 cut(s) 516
BshVI ATCGAT 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 100
BsiSI CCGG 4 cut(s) 126, 238, 354, 1094
BslFI GGGAC 2 cut(s) 74, 1348
BslI CCNNNNNNNGG 3 cut(s) 176, 232, 649
BsmAI GTCTC 2 cut(s) 603, 810
BsmFI GGGAC 2 cut(s) 74, 1348
BsnI GGCC 2 cut(s) 225, 236
Bso31I GGTCTC 1 cut(s) 810
Bsp143I GATC 2 cut(s) 961, 1125
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 5 cut(s) 115, 123, 866, 1317, 1332
BspANI GGCC 2 cut(s) 225, 236
BspCNI CTCAG 1 cut(s) 1341
BspDI ATCGAT 1 cut(s) 30
BspFNI CGCG 3 cut(s) 371, 431, 1260
BspLI GGNNCC 4 cut(s) 217, 518, 963, 1336
BspMAI CTGCAG 1 cut(s) 168
BspPI GGATC 2 cut(s) 956, 969
BspT107I GGYRCC 1 cut(s) 516
BspTI CTTAAG 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 810
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 3 cut(s) 679, 989, 1023
BssECI CCNNGG 5 cut(s) 47, 57, 252, 612, 1250
BssMI GATC 2 cut(s) 961, 1125
BssNI GRCGYC 1 cut(s) 517
BssSI CACGAG 1 cut(s) 1051
BssT1I CCWWGG 3 cut(s) 47, 612, 1250
Bst2BI CACGAG 1 cut(s) 1051
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 3 cut(s) 65, 101, 451
Bst6I CTCTTC 1 cut(s) 606
BstACI GRCGYC 1 cut(s) 517
BstAFI CTTAAG 1 cut(s) 476
BstC8I GCNNGC 3 cut(s) 1199, 1235, 1298
BstDEI CTNAG 2 cut(s) 728, 1328
BstDSI CCRYGG 2 cut(s) 252, 612
BstF5I GGATG 3 cut(s) 403, 1108, 1288
BstFNI CGCG 3 cut(s) 371, 431, 1260
BstH2I RGCGCY 1 cut(s) 520
BstHHI GCGC 4 cut(s) 343, 431, 519, 1260
BstKTI GATC 2 cut(s) 964, 1128
BstMAI GTCTC 2 cut(s) 603, 810
BstMBI GATC 2 cut(s) 961, 1125
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 6 cut(s) 189, 419, 428, 481, 714, 1157
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 3 cut(s) 1197, 1201, 1300
BstSCI CCNGG 2 cut(s) 56, 236
BstSFI CTRYAG 2 cut(s) 164, 681
BstUI CGCG 3 cut(s) 371, 431, 1260
BstV1I GCAGC 3 cut(s) 167, 178, 1100
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 2 cut(s) 961, 1125
BstYI RGATCY 2 cut(s) 961, 1125
Bsu15I ATCGAT 1 cut(s) 30
BsuI GTATCC 2 cut(s) 570, 583
BsuRI GGCC 2 cut(s) 225, 236
BsuTUI ATCGAT 1 cut(s) 30
BtgI CCRYGG 2 cut(s) 252, 612
BtgZI GCGATG 1 cut(s) 386
BtsCI GGATG 3 cut(s) 403, 1108, 1288
Cac8I GCNNGC 3 cut(s) 1199, 1235, 1298
CfoI GCGC 4 cut(s) 343, 431, 519, 1260
Cfr13I GGNCC 4 cut(s) 51, 224, 235, 1335
ClaI ATCGAT 1 cut(s) 30
Csp6I GTAC 6 cut(s) 241, 506, 547, 702, 1271, 1321
CviAII CATG 6 cut(s) 613, 922, 1194, 1198, 1293, 1297
CviQI GTAC 6 cut(s) 241, 506, 547, 702, 1271, 1321
DdeI CTNAG 2 cut(s) 728, 1328
DinI GGCGCC 1 cut(s) 518
DpnI GATC 2 cut(s) 963, 1127
DpnII GATC 2 cut(s) 961, 1125
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
EciI GGCGGA 1 cut(s) 112
Eco130I CCWWGG 3 cut(s) 47, 612, 1250
Eco31I GGTCTC 1 cut(s) 810
Eco32I GATATC 1 cut(s) 957
Eco47I GGWCC 2 cut(s) 51, 1335
Eco57I CTGAAG 2 cut(s) 894, 1163
EcoRII CCWGG 1 cut(s) 56
EcoRV GATATC 1 cut(s) 957
EcoT14I CCWWGG 3 cut(s) 47, 612, 1250
EcoT22I ATGCAT 3 cut(s) 1199, 1203, 1298
EgeI GGCGCC 1 cut(s) 518
EheI GGCGCC 1 cut(s) 518
ErhI CCWWGG 3 cut(s) 47, 612, 1250
FaeI CATG 6 cut(s) 616, 925, 1197, 1201, 1296, 1300
FalI AAGNNNNNCTT 2 cut(s) 921, 953
FaqI GGGAC 2 cut(s) 74, 1348
FatI CATG 6 cut(s) 612, 921, 1193, 1197, 1292, 1296
FauI CCCGC 3 cut(s) 122, 1310, 1325
FblI GTMKAC 1 cut(s) 977
Fnu4HI GCNGC 3 cut(s) 167, 181, 1089
FokI GGATG 3 cut(s) 410, 1115, 1275
Fsp4HI GCNGC 3 cut(s) 167, 181, 1089
FspBI CTAG 4 cut(s) 48, 528, 981, 1074
GlaI GCGC 4 cut(s) 342, 430, 518, 1259
GluI GCNGC 3 cut(s) 167, 181, 1089
GsuI CTGGAG 1 cut(s) 972
HaeII RGCGCY 1 cut(s) 520
HaeIII GGCC 2 cut(s) 225, 236
HapII CCGG 4 cut(s) 126, 238, 354, 1094
HhaI GCGC 4 cut(s) 343, 431, 519, 1260
Hin1I GRCGYC 1 cut(s) 517
Hin1II CATG 6 cut(s) 616, 925, 1197, 1201, 1296, 1300
Hin6I GCGC 4 cut(s) 341, 429, 517, 1258
HinP1I GCGC 4 cut(s) 341, 429, 517, 1258
HinfI GANTC 4 cut(s) 32, 576, 869, 1311
HpaII CCGG 4 cut(s) 126, 238, 354, 1094
HphI GGTGA 2 cut(s) 293, 1338
Hpy166II GTNNAC 4 cut(s) 54, 243, 252, 978
Hpy188I TCNGA 7 cut(s) 13, 40, 564, 637, 946, 961, 1246
Hpy188III TCNNGA 3 cut(s) 272, 860, 1281
Hpy8I GTNNAC 4 cut(s) 54, 243, 252, 978
Hpy99I CGWCG 2 cut(s) 95, 436
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 3 cut(s) 65, 101, 451
HpyCH4IV ACGT 2 cut(s) 434, 1323
HpyF10VI GCNNNNNNNGC 6 cut(s) 189, 419, 428, 481, 714, 1157
HpyF3I CTNAG 2 cut(s) 728, 1328
HpySE526I ACGT 2 cut(s) 434, 1323
Hsp92I GRCGYC 1 cut(s) 517
Hsp92II CATG 6 cut(s) 616, 925, 1197, 1201, 1296, 1300
HspAI GCGC 4 cut(s) 341, 429, 517, 1258
KasI GGCGCC 1 cut(s) 516
Kzo9I GATC 2 cut(s) 961, 1125
LmnI GCTCC 6 cut(s) 74, 128, 215, 502, 1110, 1156
Lsp1109I GCAGC 3 cut(s) 167, 178, 1100
LweI GCATC 4 cut(s) 363, 941, 1093, 1297
MaeI CTAG 4 cut(s) 48, 528, 981, 1074
MaeII ACGT 2 cut(s) 434, 1323
MalI GATC 2 cut(s) 963, 1127
MboI GATC 2 cut(s) 961, 1125
MboII GAAGA 7 cut(s) 371, 454, 593, 596, 900, 938, 1169
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 2 cut(s) 961, 1125
Mly113I GGCGCC 1 cut(s) 517
MlyI GAGTC 1 cut(s) 878
MmeI TCCRAC 1 cut(s) 640
Mph1103I ATGCAT 3 cut(s) 1199, 1203, 1298
MroXI GAANNNNTTC 2 cut(s) 1067, 1310
MseI TTAA 7 cut(s) 261, 366, 477, 551, 996, 1079, 1119
MslI CAYNNNNRTG 1 cut(s) 1301
MspA1I CMGCKG 1 cut(s) 1332
MspCI CTTAAG 1 cut(s) 476
MspI CCGG 4 cut(s) 126, 238, 354, 1094
MspR9I CCNGG 2 cut(s) 58, 238
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 58
MvnI CGCG 3 cut(s) 371, 431, 1260
MwoI GCNNNNNNNGC 6 cut(s) 189, 419, 428, 481, 714, 1157
NarI GGCGCC 1 cut(s) 517
NciI CCSGG 1 cut(s) 238
NcoI CCATGG 1 cut(s) 612
NdeII GATC 2 cut(s) 961, 1125
NlaIII CATG 6 cut(s) 616, 925, 1197, 1201, 1296, 1300
NlaIV GGNNCC 4 cut(s) 217, 518, 963, 1336
NsiI ATGCAT 3 cut(s) 1199, 1203, 1298
NspI RCATGY 3 cut(s) 1197, 1201, 1300
PaeI GCATGC 2 cut(s) 1201, 1300
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 87, 1320
PdmI GAANNNNTTC 2 cut(s) 1067, 1310
PfeI GAWTC 3 cut(s) 32, 576, 1311
PkrI GCNGC 3 cut(s) 168, 182, 1090
PleI GAGTC 1 cut(s) 877
PluTI GGCGCC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 877
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 4 cut(s) 217, 518, 963, 1336
PspPI GGNCC 4 cut(s) 51, 224, 235, 1335
PstI CTGCAG 1 cut(s) 168
PsuI RGATCY 2 cut(s) 961, 1125
RsaI GTAC 6 cut(s) 242, 507, 548, 703, 1272, 1322
RsaNI GTAC 6 cut(s) 241, 506, 547, 702, 1271, 1321
RseI CAYNNNNRTG 1 cut(s) 1301
SaqAI TTAA 7 cut(s) 261, 366, 477, 551, 996, 1079, 1119
SatI GCNGC 3 cut(s) 167, 181, 1089
Sau3AI GATC 2 cut(s) 961, 1125
Sau96I GGNCC 4 cut(s) 51, 224, 235, 1335
SchI GAGTC 1 cut(s) 878
ScrFI CCNGG 2 cut(s) 58, 238
SfaNI GCATC 4 cut(s) 363, 941, 1093, 1297
SfcI CTRYAG 2 cut(s) 164, 681
SfoI GGCGCC 1 cut(s) 518
SinI GGWCC 2 cut(s) 51, 1335
SmiMI CAYNNNNRTG 1 cut(s) 1301
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SphI GCATGC 2 cut(s) 1201, 1300
SsiI CCGC 5 cut(s) 115, 123, 866, 1317, 1332
SspDI GGCGCC 1 cut(s) 516
SspMI CTAG 4 cut(s) 48, 528, 981, 1074
StyD4I CCNGG 2 cut(s) 56, 236
StyI CCWWGG 3 cut(s) 47, 612, 1250
TaaI ACNGT 3 cut(s) 65, 101, 451
TaiI ACGT 2 cut(s) 437, 1326
TaqI TCGA 6 cut(s) 30, 81, 207, 316, 327, 758
TatI WGTACW 1 cut(s) 505
TfiI GAWTC 3 cut(s) 32, 576, 1311
Tru1I TTAA 7 cut(s) 261, 366, 477, 551, 996, 1079, 1119
Tru9I TTAA 7 cut(s) 261, 366, 477, 551, 996, 1079, 1119
TseI GCWGC 3 cut(s) 166, 180, 1088
TspDTI ATGAA 5 cut(s) 24, 414, 795, 1157, 1319
TspGWI ACGGA 4 cut(s) 61, 237, 269, 852
Vha464I CTTAAG 1 cut(s) 476
VpaK11BI GGWCC 2 cut(s) 51, 1335
XapI RAATTY 5 cut(s) 631, 783, 885, 903, 1239
XceI RCATGY 3 cut(s) 1197, 1201, 1300
XmaJI CCTAGG 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 977
XmnI GAANNNNTTC 2 cut(s) 1067, 1310
XspI CTAG 4 cut(s) 48, 528, 981, 1074
Zsp2I ATGCAT 3 cut(s) 1199, 1203, 1298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.