Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015480

Physical Location & Seq

Genomic Coordinates Forward (+)

33593065 .. 33597342

Gene Structure 4278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G366700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGTCGGAAAATAAGGCCCAAAGCGATTTATTTGAAAGCCCTAGATCGACCTGGGAAGGTTGCAGTGTCTTGCTTGACATCAACGACGGCGACCGTTTGGTTTTCGCTCGTCTCTCCTCAGGAGCGACATTGAAGATTGGGAATAAGAATTGTTCTCTGCAACCCTTGCTTGGCTGCCCCTTTGGTTCTTTCTTTCGCGTTGAAAACGGAACGCAAGGGCCGTATTTGTCTCGCTATACTCCGTCCACAGAAGGTAACAATGTTCTAGAAAAAGGTGATGGCCAGTCAATAGATGAGTTGAGAGATAATCGAGCATTAGTTGATAACAATAAAGCGCAAAGCCTAACTGGTGAAGACATAAACGAGATGCGACGACTGGGTGCAACTGGTGATGAAATTGTTGAAGCTCTTATTGCAAACAGTGCGACATTTGAGAAAAAGACTGTGTTCTCACAGGAGAAATATAGGCTTAAGAAGCAAAAGAAATATGCTCCCATTGTACTTCTGAGGCGCCCTTTCACTAGAAGTATATGTGAGGCGTACTTAAAGAAGTATCCGACTAGAATTGGATTCTTGCGAATGGATACATTATCTCTTCTGCTTTCCATGGCTAATGTCTCTGCAAATTCTGATGTCCTCGTAGTCGATATGGTTGGAGGACTTCTTACTGGTTCTGTGGCAGAGCGTTTAGGAGGGACGGGCTATGTCTGCAACACATACATTGGTGGCTCGCCTTATCCTATGGATATAGCAAGGATATTCAACTTCGGAGATGAAATTTGCAAGAGGATTGTGAGGTCTCCTCTGACTGATCTCTTCTCTGTGCAAAATGGTCTGCAAAAACCAGTAAGTCAAGATTCGGACTCTTGTAACATGGAAAGTCAGTCAAATGACCGAATTTCTTCACCAGTCAGCATGGAAGAAGTCTCTCTTGCATCTGAAAATGTGATATCGGATCTTATTCCTGAGTCTACCAGTTCTCCAGTAATCAAAATGTCCAAACCTGCAAAACTGGGAGAAAAAGCACCACAGGAAATCATCAGCTCGTGGAAAGAGCATGGTTTCTCTTGTTTAATAATAGCAGCACCAGAGCTGGATACTTGGAGCTTAGTTAAGGAGATCTTTCCACTTATGTCAAGTTCAGCTCCTTTTGCTATTTATCATCAGTATCTTCAGCCTCTTGCAACATGCATGCACAATTTACAACTGGGAAAAATGGCAATTGGCATGCAAATTTCAGAACCTTGGCTACGCGAATATCAGGTACTTCCCTCAAGAACCCATCCATGCATGCAGATGAATGCATTCGGTGGTTACATTCTCAGCGGGACCAAGATAAGTCCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0030488 GO:0031515 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gcd10p

Protein Analysis

450

Amino Acids

49.52

Weight (kDa)

5.97

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45730
fragaria_vesca	FvH4_2g38570
malus_domestica	MD08G1013700.v1.1 MD15G1013300.v1.1
prunus_persica	Prupe.1G366700_v2.0.a1
pyrus_communis	pycom08g01240
rosa_chinensis	RchiOBHm_Chr6g0302731
rosa_laevigata	RLG00000011143
rosa_multiflora	Rmu_sc0009897.1_g000006
rosa_roxburghii	Rroxscaffold_7G00165370
rosa_rugosa	Rorug06G0316600
rosa_samantha	Rh6AG429900 Rh6BG472600 Rh6CG442400 Rh6DG429100
rosa_wichuraiana	Rw6G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1012
AccB1I	GGYRCC	1 cut(s)	510
AccI	GTMKAC	1 cut(s)	971
AccII	CGCG	2 cut(s)	198, 1254
AciI	CCGC	1 cut(s)	1326
AclWI	GGATC	1 cut(s)	963
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	4 cut(s)	625, 777, 897, 1233
AcuI	CTGAAG	1 cut(s)	1157
AcyI	GRCGYC	1 cut(s)	511
AfaI	GTAC	3 cut(s)	501, 542, 1266
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflII	CTTAAG	1 cut(s)	470
AgsI	TTSAA	5 cut(s)	35, 133, 203, 404, 763
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	5 cut(s)	407, 1044, 1093, 1107, 1145
AluI	AGCT	5 cut(s)	407, 1044, 1093, 1107, 1145
Alw26I	GTCTC	5 cut(s)	116, 234, 622, 804, 931
AlwI	GGATC	1 cut(s)	963
AoxI	GGCC	3 cut(s)	15, 218, 280
ApeKI	GCWGC	2 cut(s)	174, 1082
ApoI	RAATTY	4 cut(s)	625, 777, 897, 1233
Asp700I	GAANNNNTTC	2 cut(s)	901, 1304
AspLEI	GCGC	2 cut(s)	337, 513
AspS9I	GGNCC	3 cut(s)	16, 218, 1329
AsuHPI	GGTGA	4 cut(s)	287, 362, 401, 897
AvaII	GGWCC	1 cut(s)	1329
AxyI	CCTNAGG	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	510
BauI	CACGAG	1 cut(s)	1045
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	161, 1094
BccI	CCATC	2 cut(s)	272, 1290
BceAI	ACGGC	2 cut(s)	103, 205
BciT130I	CCWGG	1 cut(s)	52
BciVI	GTATCC	3 cut(s)	564, 577, 1090
BcoDI	GTCTC	5 cut(s)	116, 234, 622, 804, 931
BfaI	CTAG	4 cut(s)	42, 266, 522, 561
BfoI	RGCGCY	1 cut(s)	514
BfrI	CTTAAG	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	1012
BfuI	GTATCC	3 cut(s)	564, 577, 1090
BglII	AGATCT	1 cut(s)	1119
BisI	GCNGC	2 cut(s)	175, 1083
BlsI	GCNGC	2 cut(s)	176, 1084
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	1329
BmgT120I	GGNCC	3 cut(s)	16, 218, 1329
BmiI	GGNNCC	2 cut(s)	512, 1330
BmrFI	CCNGG	1 cut(s)	52
BmrI	ACTGGG	3 cut(s)	386, 1022, 1217
BmsI	GCATC	2 cut(s)	357, 944
BmuI	ACTGGG	3 cut(s)	386, 1022, 1217
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	787, 819
BpmI	CTGGAG	1 cut(s)	966
BpuEI	CTTGAG	1 cut(s)	1258
BsaHI	GRCGYC	1 cut(s)	511
BsaI	GGTCTC	1 cut(s)	804
BsaJI	CCNNGG	3 cut(s)	51, 606, 1244
BsaXI	ACNNNNNCTCC	2 cut(s)	964, 994
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse21I	CCTNAGG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	3 cut(s)	51, 606, 1244
BseGI	GGATG	1 cut(s)	1282
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	4 cut(s)	132, 497, 957, 1336
BseRI	GAGGAG	2 cut(s)	106, 792
BseXI	GCAGC	2 cut(s)	161, 1094
Bsh1236I	CGCG	2 cut(s)	198, 1254
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	17, 220, 282
BshNI	GGYRCC	1 cut(s)	510
BsiEI	CGRYCG	1 cut(s)	94
BslFI	GGGAC	3 cut(s)	709, 1326, 1342
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	5 cut(s)	116, 234, 622, 804, 931
BsmBI	CGTCTC	1 cut(s)	116
BsmFI	GGGAC	3 cut(s)	709, 1326, 1342
BsmI	GAATGC	2 cut(s)	1304, 1306
BsnI	GGCC	3 cut(s)	17, 220, 282
Bso31I	GGTCTC	1 cut(s)	804
Bsp143I	GATC	4 cut(s)	44, 811, 955, 1119
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	1 cut(s)	1326
BspANI	GGCC	3 cut(s)	17, 220, 282
BspCNI	CTCAG	4 cut(s)	131, 498, 958, 1335
BspFNI	CGCG	2 cut(s)	198, 1254
BspLI	GGNNCC	2 cut(s)	512, 1330
BspMI	ACCTGC	1 cut(s)	1012
BspPI	GGATC	1 cut(s)	963
BspT107I	GGYRCC	1 cut(s)	510
BspTI	CTTAAG	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	804
BssECI	CCNNGG	3 cut(s)	51, 606, 1244
BssMI	GATC	4 cut(s)	44, 811, 955, 1119
BssNI	GRCGYC	1 cut(s)	511
BssSI	CACGAG	1 cut(s)	1045
BssT1I	CCWWGG	2 cut(s)	606, 1244
Bst2BI	CACGAG	1 cut(s)	1045
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	3 cut(s)	95, 422, 445
Bst6I	CTCTTC	2 cut(s)	600, 821
BstACI	GRCGYC	1 cut(s)	511
BstAFI	CTTAAG	1 cut(s)	470
BstAPI	GCANNNNNTGC	2 cut(s)	166, 422
BstC8I	GCNNGC	4 cut(s)	731, 1193, 1229, 1292
BstDEI	CTNAG	5 cut(s)	118, 506, 966, 1108, 1322
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	1 cut(s)	1282
BstFNI	CGCG	2 cut(s)	198, 1254
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	2 cut(s)	337, 513
BstKTI	GATC	4 cut(s)	47, 814, 958, 1122
BstMAI	GTCTC	5 cut(s)	116, 234, 622, 804, 931
BstMBI	GATC	4 cut(s)	44, 811, 955, 1119
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	6 cut(s)	166, 413, 422, 475, 708, 1151
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	4 cut(s)	1191, 1195, 1231, 1294
BstSCI	CCNGG	1 cut(s)	50
BstUI	CGCG	2 cut(s)	198, 1254
BstV1I	GCAGC	2 cut(s)	161, 1094
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	2 cut(s)	955, 1119
BstYI	RGATCY	2 cut(s)	955, 1119
Bsu36I	CCTNAGG	1 cut(s)	118
BsuI	GTATCC	3 cut(s)	564, 577, 1090
BsuRI	GGCC	3 cut(s)	17, 220, 282
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	1 cut(s)	1282
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	70, 427
BveI	ACCTGC	1 cut(s)	1012
Cac8I	GCNNGC	4 cut(s)	731, 1193, 1229, 1292
CfoI	GCGC	2 cut(s)	337, 513
Cfr13I	GGNCC	3 cut(s)	16, 218, 1329
Csp6I	GTAC	3 cut(s)	500, 541, 1265
CviAII	CATG	9 cut(s)	607, 874, 916, 1058, 1188, 1192, 1228, 1287, 1291
CviQI	GTAC	3 cut(s)	500, 541, 1265
DdeI	CTNAG	5 cut(s)	118, 506, 966, 1108, 1322
DinI	GGCGCC	1 cut(s)	512
DpnI	GATC	4 cut(s)	46, 813, 957, 1121
DpnII	GATC	4 cut(s)	44, 811, 955, 1119
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	2 cut(s)	600, 821
EarI	CTCTTC	2 cut(s)	600, 821
Eco130I	CCWWGG	2 cut(s)	606, 1244
Eco31I	GGTCTC	1 cut(s)	804
Eco32I	GATATC	1 cut(s)	951
Eco47I	GGWCC	1 cut(s)	1329
Eco57I	CTGAAG	1 cut(s)	1157
Eco81I	CCTNAGG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	50
EcoRV	GATATC	1 cut(s)	951
EcoT14I	CCWWGG	2 cut(s)	606, 1244
EcoT22I	ATGCAT	3 cut(s)	1193, 1292, 1306
EgeI	GGCGCC	1 cut(s)	512
EheI	GGCGCC	1 cut(s)	512
ErhI	CCWWGG	2 cut(s)	606, 1244
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	9 cut(s)	610, 877, 919, 1061, 1191, 1195, 1231, 1290, 1294
FalI	AAGNNNNNCTT	4 cut(s)	915, 947, 1106, 1138
FaqI	GGGAC	3 cut(s)	709, 1326, 1342
FatI	CATG	9 cut(s)	606, 873, 915, 1057, 1187, 1191, 1227, 1286, 1290
FauI	CCCGC	1 cut(s)	1319
FblI	GTMKAC	1 cut(s)	971
Fnu4HI	GCNGC	2 cut(s)	175, 1083
FokI	GGATG	1 cut(s)	1269
Fsp4HI	GCNGC	2 cut(s)	175, 1083
FspBI	CTAG	4 cut(s)	42, 266, 522, 561
GlaI	GCGC	2 cut(s)	336, 512
GluI	GCNGC	2 cut(s)	175, 1083
GsuI	CTGGAG	1 cut(s)	966
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	3 cut(s)	17, 220, 282
HhaI	GCGC	2 cut(s)	337, 513
Hin1I	GRCGYC	1 cut(s)	511
Hin1II	CATG	9 cut(s)	610, 877, 919, 1061, 1191, 1195, 1231, 1290, 1294
Hin6I	GCGC	2 cut(s)	335, 511
HinP1I	GCGC	2 cut(s)	335, 511
HinfI	GANTC	4 cut(s)	570, 857, 863, 968
HphI	GGTGA	4 cut(s)	287, 362, 401, 897
Hpy166II	GTNNAC	2 cut(s)	246, 972
Hpy188III	TCNNGA	5 cut(s)	120, 266, 854, 965, 1275
Hpy8I	GTNNAC	2 cut(s)	246, 972
Hpy99I	CGWCG	2 cut(s)	89, 375
HpyAV	CCTTC	2 cut(s)	50, 245
HpyCH4III	ACNGT	3 cut(s)	95, 422, 445
HpyF10VI	GCNNNNNNNGC	6 cut(s)	166, 413, 422, 475, 708, 1151
HpyF3I	CTNAG	5 cut(s)	118, 506, 966, 1108, 1322
Hsp92I	GRCGYC	1 cut(s)	511
Hsp92II	CATG	9 cut(s)	610, 877, 919, 1061, 1191, 1195, 1231, 1290, 1294
HspAI	GCGC	2 cut(s)	335, 511
KasI	GGCGCC	1 cut(s)	510
Kzo9I	GATC	4 cut(s)	44, 811, 955, 1119
LmnI	GCTCC	4 cut(s)	122, 496, 1104, 1150
Lsp1109I	GCAGC	2 cut(s)	161, 1094
LweI	GCATC	2 cut(s)	357, 944
MaeI	CTAG	4 cut(s)	42, 266, 522, 561
MaeIII	GTNAC	3 cut(s)	254, 869, 1313
MalI	GATC	4 cut(s)	46, 813, 957, 1121
MboI	GATC	4 cut(s)	44, 811, 955, 1119
MboII	GAAGA	7 cut(s)	145, 365, 587, 808, 894, 932, 1163
MfeI	CAATTG	1 cut(s)	1221
MflI	RGATCY	2 cut(s)	955, 1119
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	9 cut(s)	148, 396, 564, 625, 777, 897, 1198, 1221, 1233
MluNI	TGGCCA	1 cut(s)	282
Mly113I	GGCGCC	1 cut(s)	511
MlyI	GAGTC	2 cut(s)	857, 977
MmeI	TCCRAC	2 cut(s)	581, 634
Mox20I	TGGCCA	1 cut(s)	282
Mph1103I	ATGCAT	3 cut(s)	1193, 1292, 1306
MroXI	GAANNNNTTC	2 cut(s)	901, 1304
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	4 cut(s)	471, 545, 1073, 1113
MslI	CAYNNNNRTG	1 cut(s)	1295
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	1326
MspCI	CTTAAG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	1221
Mva1269I	GAATGC	2 cut(s)	1304, 1306
MvaI	CCWGG	1 cut(s)	52
MvnI	CGCG	2 cut(s)	198, 1254
MwoI	GCNNNNNNNGC	6 cut(s)	166, 413, 422, 475, 708, 1151
NarI	GGCGCC	1 cut(s)	511
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	4 cut(s)	44, 811, 955, 1119
NlaIII	CATG	9 cut(s)	610, 877, 919, 1061, 1191, 1195, 1231, 1290, 1294
NlaIV	GGNNCC	2 cut(s)	512, 1330
NsiI	ATGCAT	3 cut(s)	1193, 1292, 1306
NspI	RCATGY	4 cut(s)	1191, 1195, 1231, 1294
PaeI	GCATGC	3 cut(s)	1195, 1231, 1294
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PctI	GAATGC	2 cut(s)	1304, 1306
PdmI	GAANNNNTTC	2 cut(s)	901, 1304
PfeI	GAWTC	2 cut(s)	570, 857
PkrI	GCNGC	2 cut(s)	176, 1084
PleI	GAGTC	2 cut(s)	857, 976
PluTI	GGCGCC	1 cut(s)	514
PpsI	GAGTC	2 cut(s)	857, 976
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	512, 1330
PspPI	GGNCC	3 cut(s)	16, 218, 1329
PsrI	GAACNNNNNNTAC	2 cut(s)	1233, 1265
PsuI	RGATCY	2 cut(s)	955, 1119
RsaI	GTAC	3 cut(s)	501, 542, 1266
RsaNI	GTAC	3 cut(s)	500, 541, 1265
RseI	CAYNNNNRTG	1 cut(s)	1295
SaqAI	TTAA	4 cut(s)	471, 545, 1073, 1113
SatI	GCNGC	2 cut(s)	175, 1083
Sau3AI	GATC	4 cut(s)	44, 811, 955, 1119
Sau96I	GGNCC	3 cut(s)	16, 218, 1329
SchI	GAGTC	2 cut(s)	857, 977
ScrFI	CCNGG	1 cut(s)	52
SfaNI	GCATC	2 cut(s)	357, 944
SfoI	GGCGCC	1 cut(s)	512
SinI	GGWCC	1 cut(s)	1329
SmiMI	CAYNNNNRTG	1 cut(s)	1295
SmlI	CTYRAG	2 cut(s)	470, 1273
SmoI	CTYRAG	2 cut(s)	470, 1273
SphI	GCATGC	3 cut(s)	1195, 1231, 1294
Sse9I	AATT	9 cut(s)	148, 396, 564, 625, 777, 897, 1198, 1221, 1233
SsiI	CCGC	1 cut(s)	1326
SspDI	GGCGCC	1 cut(s)	510
SspMI	CTAG	4 cut(s)	42, 266, 522, 561
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	2 cut(s)	606, 1244
TaaI	ACNGT	3 cut(s)	95, 422, 445
TaqI	TCGA	3 cut(s)	47, 310, 645
TaqII	GACCGA	1 cut(s)	909
TasI	AATT	9 cut(s)	148, 396, 564, 625, 777, 897, 1198, 1221, 1233
TatI	WGTACW	1 cut(s)	499
TfiI	GAWTC	2 cut(s)	570, 857
Tru1I	TTAA	4 cut(s)	471, 545, 1073, 1113
Tru9I	TTAA	4 cut(s)	471, 545, 1073, 1113
TscAI	CASTG	2 cut(s)	70, 427
TseI	GCWGC	2 cut(s)	174, 1082
TspDTI	ATGAA	3 cut(s)	408, 789, 1313
TspGWI	ACGGA	2 cut(s)	222, 231
TspRI	CASTG	2 cut(s)	70, 427
Vha464I	CTTAAG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	1329
XapI	RAATTY	4 cut(s)	625, 777, 897, 1233
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	4 cut(s)	1191, 1195, 1231, 1294
XmiI	GTMKAC	1 cut(s)	971
XmnI	GAANNNNTTC	2 cut(s)	901, 1304
XspI	CTAG	4 cut(s)	42, 266, 522, 561
Zsp2I	ATGCAT	3 cut(s)	1193, 1292, 1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.