Rh6DG429100

tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
60919715 .. 60923396
3682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG429100.1

Sequence Viewer

Length: 1353 bp
ATGTCTGAAAATAAGCTCCACGGCGATGCTGTGGAAAACCCTAGACTCACCTGGGACGGTTGCAGCGTCTTGCTTGACATCAACGACGGCGACCGTTTGGTTTTCTCGCGCCTCTCCGCCGGAGCAAAATTGAAAATTGGGAATAAGAATTGCTCCCTGCAGCCCTTGATTGGCTGCCCCTTCGGTTCCTTTTTTCGAGTCGAAAACGGAGCAGAAGGGCCTTATTTGTCAAGATATACTCCCTCCAATGAAGGTAATAGTATTCAAGAACAAGGGGATTGCCAATCGAAAGACGAGTTAAGAGATAATCGAGCATTGGTTGATAACAATAAAGCGCAAAGCCTAACGGGTGATGCCATCAATGAGATGCGACGACAGGGCGCAAGTGGTGATGAAATAGTTGAAGCTCTCATTGCCAACAGTGCGACGTTTGAGAAAAAGACACTGTTCTCACAGGAGAAATATAGGCTTAAGAAGCAAAAAAAGTATGCTCCCATTGTACTTCTCAGGCGGCCTTTCACTAGAAGTATATGTGAGGCGTACTTGAAGAAATATCCGGTTAGAATTGGATTCTTGCGGATGGATACGTTATGTCTGCTGCTTTCCATGGCCAATGTTTCTGCTAATTCCGATGTCCTTGTAGTCGACATGGTTGGAGGGCTTCTTACTGGTGCTGTGGCAGAGCGTTTAGGAGGTACAGGTTATGTCTGCAATACATATCCTGGTGGCTCACCTTATCCTATGGATATAGCGAGGATATTCAACTTTGGGGAAGAAATTTGCAAGAGGATTGTGAGGTCTCCTCTGGCTGACCTTTTCTCCGTCCAGACTGAAAAGTCAAAAGTCTCGAGTCACAATGGGGACTCTTGTAGCATGGAAATTGAATCAAATAAACAAATATCTTCAACGGCTGGCACGGAAGAAGTTTCTCTTGCGTCTGAGAATATGATATCAGATCTTGTTCCTGAAACTACCTATTCTGTAGAAAGAAAACCGAGCAAATCTGCAAAACTAGGAGAAAAAGCACCACATGAAATCATCAGCTTGTGGAAAGAGAATGGCTTCACTAGTTTAATAATAGCAGCACCAGAGCTGGATACGTGGAGTCTGGTTAAAAAGATATTGCCACTTCTGTCAAATTCTGCTCCTTTTGCTATTTATCACCAGTATCTTCAGCCGCTCGCAACATGCATGCACAATCTACAAGTGGGGAAAATGGCAGTTGGCTTGCAAATTTCAGAACCTTGGTTACGTGAATATCAGGTACTTCCATCAAGAACCCATCCATGTATGCAGATGAATGGATTTGGTGGGTACATTCTCAGCGGGACCAAGATATGTACCAACAACTGA

Protein Analysis

450

Amino Acids

49.59

Weight (kDa)

7.47

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gcd10p PF04189 22 - 282 3.8e-58 Gcd10p family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45730
fragaria_vesca FvH4_2g38570
malus_domestica MD08G1013700.v1.1 MD15G1013300.v1.1
prunus_persica Prupe.1G366700_v2.0.a1
pyrus_communis pycom08g01240
rosa_chinensis RchiOBHm_Chr6g0302731
rosa_laevigata RLG00000011143
rosa_multiflora Rmu_sc0009897.1_g000006
rosa_roxburghii Rroxscaffold_7G00165370
rosa_rugosa Rorug06G0316600
rosa_samantha Rh6AG429900 Rh6BG472600 Rh6CG442400 Rh6DG429100
rosa_wichuraiana Rw6G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 835
AccBSI CCGCTC 1 cut(s) 1180
AccI GTMKAC 1 cut(s) 645
AccII CGCG 1 cut(s) 109
AciI CCGC 5 cut(s) 117, 511, 577, 1178, 1326
AcoI YGGCCR 1 cut(s) 609
AcsI RAATTY 3 cut(s) 777, 1138, 1233
AcuI CTGAAG 1 cut(s) 1157
AfaI GTAC 6 cut(s) 501, 542, 697, 1266, 1316, 1342
AfiI CCNNNNNNNGG 1 cut(s) 170
AflII CTTAAG 1 cut(s) 470
AgsI TTSAA 7 cut(s) 133, 266, 404, 547, 763, 884, 906
AhlI ACTAGT 1 cut(s) 1067
AjnI CCWGG 2 cut(s) 50, 721
AluBI AGCT 4 cut(s) 16, 407, 1044, 1093
AluI AGCT 4 cut(s) 16, 407, 1044, 1093
Alw26I GTCTC 2 cut(s) 804, 850
Ama87I CYCGRG 1 cut(s) 847
AoxI GGCC 3 cut(s) 218, 512, 609
ApeKI GCWGC 5 cut(s) 63, 160, 174, 598, 1082
ApoI RAATTY 3 cut(s) 777, 1138, 1233
Asp700I GAANNNNTTC 1 cut(s) 1061
AspLEI GCGC 3 cut(s) 111, 337, 383
AspS9I GGNCC 2 cut(s) 218, 1329
AsuHPI GGTGA 5 cut(s) 40, 362, 401, 723, 1154
AvaI CYCGRG 1 cut(s) 847
AvaII GGWCC 1 cut(s) 1329
BalI TGGCCA 1 cut(s) 611
BbvI GCAGC 5 cut(s) 75, 161, 172, 585, 1094
BccI CCATC 4 cut(s) 365, 574, 1279, 1290
BceAI ACGGC 3 cut(s) 37, 103, 924
BciT130I CCWGG 2 cut(s) 52, 723
BciVI GTATCC 2 cut(s) 577, 1090
BcoDI GTCTC 2 cut(s) 804, 850
BcuI ACTAGT 1 cut(s) 1067
BfaI CTAG 4 cut(s) 42, 522, 1013, 1068
BfmI CTRYAG 2 cut(s) 158, 981
BfrI CTTAAG 1 cut(s) 470
BfuI GTATCC 2 cut(s) 577, 1090
BglII AGATCT 1 cut(s) 955
BisI GCNGC 7 cut(s) 64, 161, 175, 512, 599, 1083, 1178
BlsI GCNGC 7 cut(s) 65, 162, 176, 513, 600, 1084, 1179
Bme1390I CCNGG 2 cut(s) 52, 723
Bme18I GGWCC 1 cut(s) 1329
BmeT110I CYCGRG 1 cut(s) 847
BmgT120I GGNCC 2 cut(s) 218, 1329
BmiI GGNNCC 2 cut(s) 187, 1330
BmrFI CCNGG 2 cut(s) 52, 723
BmsI GCATC 3 cut(s) 16, 343, 357
BplI GAGNNNNNCTC 2 cut(s) 787, 819
BsaAI YACGTR 2 cut(s) 1101, 1253
BsaI GGTCTC 1 cut(s) 804
BsaJI CCNNGG 4 cut(s) 19, 51, 606, 1244
BsaWI WCCGGW 1 cut(s) 556
BsaXI ACNNNNNCTCC 2 cut(s) 803, 833
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 673, 1165
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 2 cut(s) 52, 723
BseDI CCNNGG 4 cut(s) 19, 51, 606, 1244
BseGI GGATG 2 cut(s) 585, 1282
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 3 cut(s) 520, 930, 1336
BseNI ACTGG 2 cut(s) 673, 1165
BseRI GAGGAG 1 cut(s) 792
BseXI GCAGC 5 cut(s) 75, 161, 172, 585, 1094
Bsh1236I CGCG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 3 cut(s) 220, 514, 611
BsiEI CGRYCG 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 847
BsiSI CCGG 2 cut(s) 120, 557
BslFI GGGAC 3 cut(s) 68, 875, 1342
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 804, 850
BsmFI GGGAC 3 cut(s) 68, 875, 1342
BsnI GGCC 3 cut(s) 220, 514, 611
Bso31I GGTCTC 1 cut(s) 804
BsoBI CYCGRG 1 cut(s) 847
Bsp143I GATC 1 cut(s) 955
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 5 cut(s) 117, 511, 577, 1178, 1326
BspANI GGCC 3 cut(s) 220, 514, 611
BspCNI CTCAG 3 cut(s) 519, 931, 1335
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 187, 1330
BspMAI CTGCAG 1 cut(s) 162
BspTI CTTAAG 1 cut(s) 470
BspTNI GGTCTC 1 cut(s) 804
BsrBI CCGCTC 1 cut(s) 1180
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 2 cut(s) 673, 1165
BssECI CCNNGG 4 cut(s) 19, 51, 606, 1244
BssMI GATC 1 cut(s) 955
BssT1I CCWWGG 2 cut(s) 606, 1244
Bst2UI CCWGG 2 cut(s) 52, 723
Bst4CI ACNGT 4 cut(s) 59, 95, 422, 447
BstAFI CTTAAG 1 cut(s) 470
BstBAI YACGTR 2 cut(s) 1101, 1253
BstC8I GCNNGC 4 cut(s) 913, 1182, 1193, 1229
BstDEI CTNAG 3 cut(s) 506, 939, 1322
BstDSI CCRYGG 2 cut(s) 19, 606
BstF5I GGATG 2 cut(s) 585, 1282
BstFNI CGCG 1 cut(s) 109
BstHHI GCGC 3 cut(s) 111, 337, 383
BstKTI GATC 1 cut(s) 958
BstMAI GTCTC 2 cut(s) 804, 850
BstMBI GATC 1 cut(s) 955
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 4 cut(s) 413, 422, 475, 1151
BstNI CCWGG 2 cut(s) 52, 723
BstNSI RCATGY 2 cut(s) 1191, 1195
BstSCI CCNGG 2 cut(s) 50, 721
BstSFI CTRYAG 2 cut(s) 158, 981
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 5 cut(s) 75, 161, 172, 585, 1094
BstX2I RGATCY 1 cut(s) 955
BstYI RGATCY 1 cut(s) 955
BsuI GTATCC 2 cut(s) 577, 1090
BsuRI GGCC 3 cut(s) 220, 514, 611
BtgI CCRYGG 2 cut(s) 19, 606
BtgZI GCGATG 1 cut(s) 39
BtsCI GGATG 2 cut(s) 585, 1282
BtsIMutI CAGTG 2 cut(s) 427, 443
Cac8I GCNNGC 4 cut(s) 913, 1182, 1193, 1229
CfoI GCGC 3 cut(s) 111, 337, 383
Cfr13I GGNCC 2 cut(s) 218, 1329
CseI GACGC 2 cut(s) 55, 924
Csp6I GTAC 6 cut(s) 500, 541, 696, 1265, 1315, 1341
CviAII CATG 7 cut(s) 607, 649, 874, 1031, 1188, 1192, 1287
CviQI GTAC 6 cut(s) 500, 541, 696, 1265, 1315, 1341
DdeI CTNAG 3 cut(s) 506, 939, 1322
DpnI GATC 1 cut(s) 957
DpnII GATC 1 cut(s) 955
DrdI GACNNNNNNGTC 1 cut(s) 835
DseDI GACNNNNNNGTC 1 cut(s) 835
EaeI YGGCCR 1 cut(s) 609
EciI GGCGGA 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 606, 1244
Eco31I GGTCTC 1 cut(s) 804
Eco32I GATATC 1 cut(s) 951
Eco47I GGWCC 1 cut(s) 1329
Eco57I CTGAAG 1 cut(s) 1157
Eco88I CYCGRG 1 cut(s) 847
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 50, 721
EcoRV GATATC 1 cut(s) 951
EcoT14I CCWWGG 2 cut(s) 606, 1244
EcoT22I ATGCAT 1 cut(s) 1193
ErhI CCWWGG 2 cut(s) 606, 1244
FaeI CATG 7 cut(s) 610, 652, 877, 1034, 1191, 1195, 1290
FalI AAGNNNNNCTT 2 cut(s) 915, 947
FaqI GGGAC 3 cut(s) 68, 875, 1342
FatI CATG 7 cut(s) 606, 648, 873, 1030, 1187, 1191, 1286
FauI CCCGC 1 cut(s) 1319
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 7 cut(s) 64, 161, 175, 512, 599, 1083, 1178
FokI GGATG 2 cut(s) 592, 1269
Fsp4HI GCNGC 7 cut(s) 64, 161, 175, 512, 599, 1083, 1178
FspBI CTAG 4 cut(s) 42, 522, 1013, 1068
GlaI GCGC 3 cut(s) 110, 336, 382
GluI GCNGC 7 cut(s) 64, 161, 175, 512, 599, 1083, 1178
HaeIII GGCC 3 cut(s) 220, 514, 611
HapII CCGG 2 cut(s) 120, 557
HgaI GACGC 2 cut(s) 55, 924
HhaI GCGC 3 cut(s) 111, 337, 383
Hin1II CATG 7 cut(s) 610, 652, 877, 1034, 1191, 1195, 1290
Hin6I GCGC 3 cut(s) 109, 335, 381
HinP1I GCGC 3 cut(s) 109, 335, 381
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HinfI GANTC 7 cut(s) 45, 198, 570, 850, 863, 884, 1105
HpaII CCGG 2 cut(s) 120, 557
HphI GGTGA 5 cut(s) 40, 362, 401, 723, 1154
Hpy166II GTNNAC 1 cut(s) 646
Hpy188I TCNGA 5 cut(s) 7, 631, 940, 955, 1240
Hpy188III TCNNGA 6 cut(s) 231, 266, 826, 847, 965, 1275
Hpy8I GTNNAC 1 cut(s) 646
Hpy99I CGWCG 3 cut(s) 89, 375, 430
HpyAV CCTTC 3 cut(s) 190, 209, 245
HpyCH4III ACNGT 4 cut(s) 59, 95, 422, 447
HpyCH4IV ACGT 4 cut(s) 428, 587, 1100, 1252
HpyCH4V TGCA 9 cut(s) 63, 160, 711, 783, 1007, 1191, 1195, 1231, 1294
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 422, 475, 1151
HpyF3I CTNAG 3 cut(s) 506, 939, 1322
HpySE526I ACGT 4 cut(s) 428, 587, 1100, 1252
Hsp92II CATG 7 cut(s) 610, 652, 877, 1034, 1191, 1195, 1290
HspAI GCGC 3 cut(s) 109, 335, 381
Kzo9I GATC 1 cut(s) 955
LmnI GCTCC 6 cut(s) 21, 122, 158, 209, 496, 1150
Lsp1109I GCAGC 5 cut(s) 75, 161, 172, 585, 1094
LweI GCATC 3 cut(s) 16, 343, 357
MaeI CTAG 4 cut(s) 42, 522, 1013, 1068
MaeII ACGT 4 cut(s) 428, 587, 1100, 1252
MaeIII GTNAC 2 cut(s) 851, 1248
MalI GATC 1 cut(s) 957
MbiI CCGCTC 1 cut(s) 1180
MboI GATC 1 cut(s) 955
MboII GAAGA 5 cut(s) 559, 785, 894, 932, 1163
MflI RGATCY 1 cut(s) 955
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 9 cut(s) 128, 135, 148, 564, 625, 777, 879, 1138, 1233
MluNI TGGCCA 1 cut(s) 611
MlyI GAGTC 5 cut(s) 39, 207, 857, 859, 1114
MmeI TCCRAC 1 cut(s) 634
MnlI CCTC 9 cut(s) 122, 253, 529, 650, 686, 747, 780, 789, 813
Mox20I TGGCCA 1 cut(s) 611
Mph1103I ATGCAT 1 cut(s) 1193
MroXI GAANNNNTTC 1 cut(s) 1061
MscI TGGCCA 1 cut(s) 611
MseI TTAA 4 cut(s) 299, 471, 1073, 1113
MslI CAYNNNNRTG 1 cut(s) 24
Msp20I TGGCCA 1 cut(s) 611
MspA1I CMGCKG 1 cut(s) 1326
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 2 cut(s) 120, 557
MspR9I CCNGG 2 cut(s) 52, 723
MvaI CCWGG 2 cut(s) 52, 723
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 4 cut(s) 413, 422, 475, 1151
NcoI CCATGG 1 cut(s) 606
NdeII GATC 1 cut(s) 955
NlaIII CATG 7 cut(s) 610, 652, 877, 1034, 1191, 1195, 1290
NlaIV GGNNCC 2 cut(s) 187, 1330
NmuCI GTSAC 1 cut(s) 851
NsiI ATGCAT 1 cut(s) 1193
NspI RCATGY 2 cut(s) 1191, 1195
PaeI GCATGC 1 cut(s) 1195
PaeR7I CTCGAG 1 cut(s) 847
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 1061
PfeI GAWTC 2 cut(s) 570, 884
PkrI GCNGC 7 cut(s) 65, 162, 176, 513, 600, 1084, 1179
PleI GAGTC 5 cut(s) 39, 206, 857, 858, 1113
PpsI GAGTC 5 cut(s) 39, 206, 857, 858, 1113
Ppu21I YACGTR 2 cut(s) 1101, 1253
Psp6I CCWGG 2 cut(s) 50, 721
PspGI CCWGG 2 cut(s) 50, 721
PspN4I GGNNCC 2 cut(s) 187, 1330
PspPI GGNCC 2 cut(s) 218, 1329
PsrI GAACNNNNNNTAC 2 cut(s) 1233, 1265
PstI CTGCAG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 955
RsaI GTAC 6 cut(s) 501, 542, 697, 1266, 1316, 1342
RsaNI GTAC 6 cut(s) 500, 541, 696, 1265, 1315, 1341
RseI CAYNNNNRTG 1 cut(s) 24
SalI GTCGAC 1 cut(s) 644
SaqAI TTAA 4 cut(s) 299, 471, 1073, 1113
SatI GCNGC 7 cut(s) 64, 161, 175, 512, 599, 1083, 1178
Sau3AI GATC 1 cut(s) 955
Sau96I GGNCC 2 cut(s) 218, 1329
SchI GAGTC 5 cut(s) 39, 207, 857, 859, 1114
ScrFI CCNGG 2 cut(s) 52, 723
SfaNI GCATC 3 cut(s) 16, 343, 357
SfcI CTRYAG 2 cut(s) 158, 981
Sfr274I CTCGAG 1 cut(s) 847
SinI GGWCC 1 cut(s) 1329
SlaI CTCGAG 1 cut(s) 847
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 2 cut(s) 470, 847
SmoI CTYRAG 2 cut(s) 470, 847
SpeI ACTAGT 1 cut(s) 1067
SphI GCATGC 1 cut(s) 1195
Sse9I AATT 9 cut(s) 128, 135, 148, 564, 625, 777, 879, 1138, 1233
SsiI CCGC 5 cut(s) 117, 511, 577, 1178, 1326
SspMI CTAG 4 cut(s) 42, 522, 1013, 1068
StyD4I CCNGG 2 cut(s) 50, 721
StyI CCWWGG 2 cut(s) 606, 1244
TaaI ACNGT 4 cut(s) 59, 95, 422, 447
TaiI ACGT 4 cut(s) 431, 590, 1103, 1255
TaqI TCGA 6 cut(s) 196, 201, 287, 310, 645, 848
TasI AATT 9 cut(s) 128, 135, 148, 564, 625, 777, 879, 1138, 1233
TatI WGTACW 1 cut(s) 499
TauI GCSGC 2 cut(s) 514, 1180
TfiI GAWTC 2 cut(s) 570, 884
Tru1I TTAA 4 cut(s) 299, 471, 1073, 1113
Tru9I TTAA 4 cut(s) 299, 471, 1073, 1113
TscAI CASTG 2 cut(s) 427, 450
TseFI GTSAC 1 cut(s) 851
TseI GCWGC 5 cut(s) 63, 160, 174, 598, 1082
Tsp45I GTSAC 1 cut(s) 851
TspDTI ATGAA 4 cut(s) 264, 408, 1047, 1313
TspGWI ACGGA 3 cut(s) 222, 811, 932
TspRI CASTG 2 cut(s) 427, 450
Vha464I CTTAAG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 1329
XapI RAATTY 3 cut(s) 777, 1138, 1233
XceI RCATGY 2 cut(s) 1191, 1195
XhoI CTCGAG 1 cut(s) 847
XmiI GTMKAC 1 cut(s) 645
XmnI GAANNNNTTC 1 cut(s) 1061
XspI CTAG 4 cut(s) 42, 522, 1013, 1068
Zsp2I ATGCAT 1 cut(s) 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.