Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015480

Physical Location & Seq

Genomic Coordinates Forward (+)

46809866 .. 46812455

Gene Structure 2590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0316600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGCATTCGGCGTTTCCGGCCGACGAAATTCCCGACATCTCTGACACCTTCTGGGCCTCCTCGCCGTCTCTCCCGATGAATCGCAGCGCCTCCGAGTGGGCCTTCGAGCAGTTTCTAGAGGAAGTCGTCTCCGCCCCACCACCACCACCACCCCCCGCCGCCGATCAATTGACCGTCTCCTCCGCTCACTCCTCGACGTCGAAGCGCGAGGAGGCCGATGAGGAGGTCGTCGAGATCAAGAAGCCCGATCGTCATCTCAATTGTCCGCCGCCTCCTCCTCCGCCGTCCACGGCGCCGATTAATTCGGATCAGTACCACCGCGAGCTGCTCAAGAGCAAGCTCGATCTCGCGTGTGCTGCAGTCGCTCTCACTCGGGCTTCGTCGTTGAAGCCTGTGGGTTCTGGTAATGTAGCGCAGACTCAATCTATATTGCCACAGCCTTCGCAAGTGACCTCTGCACTTCATAATAAAGCTGCGGGTTATGGTTTGCCACATAGTGAGGCTGATACTAGCCCGCTTGGCATTCCGGCTTTACCTGCTATTCAGAAAAAAGCTCAGACAACCAGTGGATCGTCGAAAGATGACTCGGATGATGATGACCTGGAAGGCGACATTGAAATTACCGAGAATATGGATCCTGCTGATGTGAAGCGCGCTAGGAGGATGCTGTCAAATCGGGAGTCAGCTAGACGCTCTAGAAGAAGAAAACAAGCACAAATGACTGATCTTGAGACCCAGGCTGGCCAACTAAGAGTCGAAAACTCTGCACTGTTAAAACAACTCACTGACGTGAATCACAAATATGATAATTCAGTCGTTGATAGAAGAATATTAGAAGCCAATATTGAGACATTAAGAGCAAAGGTGAAAATGGCAGAAGAATCTGTCAAGAGGAAGACAGGGATCAACCCGCTACTTCTAGCCATGTCTAATGTACCAAATGTACCTAGAGCAAGCATGGCATCACTAGGCAATCCAATGGATACATCTGCCAATGCTTCTGTGCCAATGCAACCAACCTCCAATCATCTCTTTCATCCAGTGGCTCCTAGTATCAACACTCCACCACATCACCAGAGATTAGATACCAGCTTCCCTGGAAACCCCTCGATTCCTCTAGTTGGAAACCAACAGAGTACTGTTGGGCAACCAATTGTGAGGGGAAGCAACACGACTGAAGTACCTTCAGTTCAGCACACAGCTAGCATAGATCACATGCACCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCACCAGCAGCAACTTCGGCCAGGAGTGAATCCGTGTGAAGCATTGCCAGTTTGGAACCCTCAGATTCCCCATGCAGTCCCCAAGAATAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0030488 GO:0031515 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gcd10p

Protein Analysis

451

Amino Acids

49.19

Weight (kDa)

6.35

Isoelectric Point (pI)

65.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	216 - 269	1e-13	bZIP transcription factor
bZIP_2	PF07716	217 - 262	2.1e-08	Basic region leucine zipper
bZIP_C	PF12498	284 - 409	1.6e-20	Basic leucine-zipper C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45730
fragaria_vesca	FvH4_2g38570
malus_domestica	MD08G1013700.v1.1 MD15G1013300.v1.1
prunus_persica	Prupe.1G366700_v2.0.a1
pyrus_communis	pycom08g01240
rosa_chinensis	RchiOBHm_Chr6g0302731
rosa_laevigata	RLG00000011143
rosa_multiflora	Rmu_sc0009897.1_g000006
rosa_roxburghii	Rroxscaffold_7G00165370
rosa_rugosa	Rorug06G0316600
rosa_samantha	Rh6AG429900 Rh6BG472600 Rh6CG442400 Rh6DG429100
rosa_wichuraiana	Rw6G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	544
AccB1I	GGYRCC	1 cut(s)	292
AccBSI	CCGCTC	1 cut(s)	185
AccII	CGCG	4 cut(s)	207, 321, 350, 654
AclWI	GGATC	5 cut(s)	315, 577, 629, 642, 911
AcoI	YGGCCR	3 cut(s)	18, 742, 1277
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	2 cut(s)	1170, 1197
AcyI	GRCGYC	2 cut(s)	197, 293
AdeI	CACNNNGTG	1 cut(s)	497
AfaI	GTAC	5 cut(s)	314, 936, 945, 1138, 1182
AfiI	CCNNNNNNNGG	2 cut(s)	96, 1121
AgsI	TTSAA	2 cut(s)	388, 617
AjiI	CACGTC	1 cut(s)	790
AjnI	CCWGG	4 cut(s)	600, 735, 1096, 1279
AleI	CACNNNNGTG	1 cut(s)	788
AluBI	AGCT	7 cut(s)	325, 340, 473, 554, 686, 1092, 1202
AluI	AGCT	7 cut(s)	325, 340, 473, 554, 686, 1092, 1202
Alw26I	GTCTC	5 cut(s)	72, 133, 181, 725, 842
AlwI	GGATC	5 cut(s)	315, 577, 629, 642, 911
Ama87I	CYCGRG	1 cut(s)	372
AoxI	GGCC	6 cut(s)	18, 54, 99, 213, 742, 1277
ApoI	RAATTY	1 cut(s)	27
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AseI	ATTAAT	1 cut(s)	300
AspLEI	GCGC	6 cut(s)	89, 207, 295, 415, 654, 656
AspS9I	GGNCC	2 cut(s)	54, 99
AsuHPI	GGTGA	2 cut(s)	877, 1064
AsuNHI	GCTAGC	1 cut(s)	1202
AvaI	CYCGRG	1 cut(s)	372
BaeI	ACNNNNGTAYC	2 cut(s)	1164, 1197
BalI	TGGCCA	1 cut(s)	744
BamHI	GGATCC	1 cut(s)	634
BanI	GGYRCC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	902
BceAI	ACGGC	3 cut(s)	49, 268, 306
BcgI	CGANNNNNNTGC	4 cut(s)	746, 780, 1256, 1290
BciT130I	CCWGG	4 cut(s)	602, 737, 1098, 1281
BciVI	GTATCC	1 cut(s)	976
BcoDI	GTCTC	5 cut(s)	72, 133, 181, 725, 842
BfmI	CTRYAG	1 cut(s)	357
BfoI	RGCGCY	2 cut(s)	90, 296
BfuAI	ACCTGC	1 cut(s)	544
BfuI	GTATCC	1 cut(s)	976
BglI	GCCNNNNNGGC	1 cut(s)	519
BmcAI	AGTACT	1 cut(s)	1138
Bme1390I	CCNGG	4 cut(s)	602, 737, 1098, 1281
BmeT110I	CYCGRG	1 cut(s)	372
BmgBI	CACGTC	1 cut(s)	790
BmgT120I	GGNCC	2 cut(s)	54, 99
BmiI	GGNNCC	4 cut(s)	294, 636, 1047, 1316
BmrFI	CCNGG	4 cut(s)	602, 737, 1098, 1281
BmsI	GCATC	2 cut(s)	654, 971
BmtI	GCTAGC	1 cut(s)	1206
BpiI	GAAGAC	1 cut(s)	902
BpuEI	CTTGAG	2 cut(s)	314, 749
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	2 cut(s)	197, 293
BsaI	GGTCTC	1 cut(s)	725
BsaJI	CCNNGG	3 cut(s)	288, 735, 1096
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 1121
Bse1I	ACTGG	3 cut(s)	564, 1040, 1307
Bse3DI	GCAATG	1 cut(s)	1301
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	4 cut(s)	602, 737, 1098, 1281
BseDI	CCNNGG	3 cut(s)	288, 735, 1096
BseGI	GGATG	3 cut(s)	595, 669, 1036
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	96, 1121
BseMI	GCAATG	1 cut(s)	1301
BseMII	CTCAG	2 cut(s)	569, 1334
BseNI	ACTGG	3 cut(s)	564, 1040, 1307
BsePI	GCGCGC	1 cut(s)	652
BseRI	GAGGAG	7 cut(s)	49, 169, 181, 224, 236, 264, 267
BseX3I	CGGCCG	1 cut(s)	18
BsgI	GTGCAG	2 cut(s)	441, 750
Bsh1236I	CGCG	4 cut(s)	207, 321, 350, 654
Bsh1285I	CGRYCG	2 cut(s)	21, 250
BshFI	GGCC	6 cut(s)	20, 56, 101, 215, 744, 1279
BshNI	GGYRCC	1 cut(s)	292
BsiEI	CGRYCG	2 cut(s)	21, 250
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	2 cut(s)	17, 527
BslFI	GGGAC	1 cut(s)	1322
BslI	CCNNNNNNNGG	2 cut(s)	96, 1121
BsmAI	GTCTC	5 cut(s)	72, 133, 181, 725, 842
BsmBI	CGTCTC	3 cut(s)	72, 133, 181
BsmFI	GGGAC	1 cut(s)	1322
BsmI	GAATGC	2 cut(s)	4, 522
BsnI	GGCC	6 cut(s)	20, 56, 101, 215, 744, 1279
Bso31I	GGTCTC	1 cut(s)	725
BsoBI	CYCGRG	1 cut(s)	372
BspANI	GGCC	6 cut(s)	20, 56, 101, 215, 744, 1279
BspCNI	CTCAG	2 cut(s)	568, 1333
BspFNI	CGCG	4 cut(s)	207, 321, 350, 654
BspLI	GGNNCC	4 cut(s)	294, 636, 1047, 1316
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	544
BspOI	GCTAGC	1 cut(s)	1206
BspPI	GGATC	5 cut(s)	315, 577, 629, 642, 911
BspT107I	GGYRCC	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	725
BsrBI	CCGCTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	1301
BsrI	ACTGG	3 cut(s)	564, 1040, 1307
BssECI	CCNNGG	3 cut(s)	288, 735, 1096
BssHII	GCGCGC	1 cut(s)	652
BssNI	GRCGYC	2 cut(s)	197, 293
Bst2UI	CCWGG	4 cut(s)	602, 737, 1098, 1281
Bst4CI	ACNGT	3 cut(s)	175, 771, 1141
BstACI	GRCGYC	2 cut(s)	197, 293
BstC8I	GCNNGC	7 cut(s)	323, 338, 515, 654, 742, 955, 1204
BstDEI	CTNAG	3 cut(s)	555, 749, 1320
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	595, 669, 1036
BstFNI	CGCG	4 cut(s)	207, 321, 350, 654
BstH2I	RGCGCY	2 cut(s)	90, 296
BstHHI	GCGC	6 cut(s)	89, 207, 295, 415, 654, 656
BstMAI	GTCTC	5 cut(s)	72, 133, 181, 725, 842
BstMCI	CGRYCG	2 cut(s)	21, 250
BstNI	CCWGG	4 cut(s)	602, 737, 1098, 1281
BstNSI	RCATGY	1 cut(s)	1219
BstSCI	CCNGG	4 cut(s)	600, 735, 1096, 1279
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	4 cut(s)	207, 321, 350, 654
BstV2I	GAAGAC	1 cut(s)	902
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
BstZI	CGGCCG	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	976
BsuRI	GGCC	6 cut(s)	20, 56, 101, 215, 744, 1279
BtgI	CCRYGG	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	790
BtsCI	GGATG	3 cut(s)	595, 669, 1036
BtsIMutI	CAGTG	4 cut(s)	571, 767, 783, 1047
BveI	ACCTGC	1 cut(s)	544
Cac8I	GCNNGC	7 cut(s)	323, 338, 515, 654, 742, 955, 1204
CfoI	GCGC	6 cut(s)	89, 207, 295, 415, 654, 656
Cfr13I	GGNCC	2 cut(s)	54, 99
CseI	GACGC	1 cut(s)	699
Csp6I	GTAC	5 cut(s)	313, 935, 944, 1137, 1181
CviAII	CATG	4 cut(s)	925, 958, 1216, 1331
CviQI	GTAC	5 cut(s)	313, 935, 944, 1137, 1181
DdeI	CTNAG	3 cut(s)	555, 749, 1320
DinI	GGCGCC	1 cut(s)	294
DraIII	CACNNNGTG	1 cut(s)	497
EaeI	YGGCCR	3 cut(s)	18, 742, 1277
EagI	CGGCCG	1 cut(s)	18
EciI	GGCGGA	3 cut(s)	121, 255, 270
EclXI	CGGCCG	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	725
Eco52I	CGGCCG	1 cut(s)	18
Eco57I	CTGAAG	2 cut(s)	1170, 1197
Eco88I	CYCGRG	1 cut(s)	372
EcoRII	CCWGG	4 cut(s)	600, 735, 1096, 1279
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	294
EheI	GGCGCC	1 cut(s)	294
Esp3I	CGTCTC	3 cut(s)	72, 133, 181
FaeI	CATG	4 cut(s)	928, 961, 1219, 1334
FaqI	GGGAC	1 cut(s)	1322
FatI	CATG	4 cut(s)	924, 957, 1215, 1330
FauI	CCCGC	4 cut(s)	163, 469, 522, 918
FokI	GGATG	3 cut(s)	602, 676, 1023
GlaI	GCGC	6 cut(s)	88, 206, 294, 414, 653, 655
HaeII	RGCGCY	2 cut(s)	90, 296
HaeIII	GGCC	6 cut(s)	20, 56, 101, 215, 744, 1279
HapII	CCGG	2 cut(s)	17, 527
HgaI	GACGC	1 cut(s)	699
HhaI	GCGC	6 cut(s)	89, 207, 295, 415, 654, 656
Hin1I	GRCGYC	2 cut(s)	197, 293
Hin1II	CATG	4 cut(s)	928, 961, 1219, 1334
Hin6I	GCGC	6 cut(s)	87, 205, 293, 413, 652, 654
HinP1I	GCGC	6 cut(s)	87, 205, 293, 413, 652, 654
HpaII	CCGG	2 cut(s)	17, 527
HphI	GGTGA	2 cut(s)	877, 1064
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	7 cut(s)	43, 94, 307, 546, 558, 589, 1323
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	6 cut(s)	26, 199, 202, 233, 385, 577
HpyAV	CCTTC	5 cut(s)	58, 112, 450, 599, 1194
HpyCH4III	ACNGT	3 cut(s)	175, 771, 1141
HpyCH4IV	ACGT	2 cut(s)	197, 789
HpyCH4V	TGCA	7 cut(s)	4, 359, 458, 767, 1012, 1219, 1334
HpyF3I	CTNAG	3 cut(s)	555, 749, 1320
HpySE526I	ACGT	2 cut(s)	197, 789
Hsp92I	GRCGYC	2 cut(s)	197, 293
Hsp92II	CATG	4 cut(s)	928, 961, 1219, 1334
HspAI	GCGC	6 cut(s)	87, 205, 293, 413, 652, 654
KasI	GGCGCC	1 cut(s)	292
LmnI	GCTCC	1 cut(s)	1051
LweI	GCATC	2 cut(s)	654, 971
MaeII	ACGT	2 cut(s)	197, 789
MaeIII	GTNAC	1 cut(s)	448
MbiI	CCGCTC	1 cut(s)	185
MboII	GAAGA	5 cut(s)	711, 714, 837, 890, 907
MfeI	CAATTG	3 cut(s)	167, 259, 1152
MflI	RGATCY	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	744
MluCI	AATT	7 cut(s)	27, 167, 259, 301, 618, 808, 1152
MluNI	TGGCCA	1 cut(s)	744
Mly113I	GGCGCC	1 cut(s)	293
MlyI	GAGTC	4 cut(s)	412, 578, 689, 762
MmeI	TCCRAC	1 cut(s)	1102
Mox20I	TGGCCA	1 cut(s)	744
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	744
MseI	TTAA	3 cut(s)	300, 773, 854
MslI	CAYNNNNRTG	2 cut(s)	788, 801
Msp20I	TGGCCA	1 cut(s)	744
MspI	CCGG	2 cut(s)	17, 527
MspR9I	CCNGG	4 cut(s)	602, 737, 1098, 1281
MunI	CAATTG	3 cut(s)	167, 259, 1152
Mva1269I	GAATGC	2 cut(s)	4, 522
MvaI	CCWGG	4 cut(s)	602, 737, 1098, 1281
MvnI	CGCG	4 cut(s)	207, 321, 350, 654
NarI	GGCGCC	1 cut(s)	293
NheI	GCTAGC	1 cut(s)	1202
NlaIII	CATG	4 cut(s)	928, 961, 1219, 1334
NlaIV	GGNNCC	4 cut(s)	294, 636, 1047, 1316
NmuCI	GTSAC	1 cut(s)	448
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	1219
OliI	CACNNNNGTG	1 cut(s)	788
PauI	GCGCGC	1 cut(s)	652
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	2 cut(s)	4, 522
PfeI	GAWTC	6 cut(s)	79, 793, 881, 1111, 1288, 1324
Ple19I	CGATCG	1 cut(s)	250
PleI	GAGTC	4 cut(s)	412, 578, 688, 761
PluTI	GGCGCC	1 cut(s)	296
PpsI	GAGTC	4 cut(s)	412, 578, 688, 761
PshBI	ATTAAT	1 cut(s)	300
Psp6I	CCWGG	4 cut(s)	600, 735, 1096, 1279
PspGI	CCWGG	4 cut(s)	600, 735, 1096, 1279
PspN4I	GGNNCC	4 cut(s)	294, 636, 1047, 1316
PspPI	GGNCC	2 cut(s)	54, 99
PsrI	GAACNNNNNNTAC	2 cut(s)	1173, 1205
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	634
PteI	GCGCGC	1 cut(s)	652
PvuI	CGATCG	1 cut(s)	250
RsaI	GTAC	5 cut(s)	314, 936, 945, 1138, 1182
RsaNI	GTAC	5 cut(s)	313, 935, 944, 1137, 1181
RseI	CAYNNNNRTG	2 cut(s)	788, 801
SaqAI	TTAA	3 cut(s)	300, 773, 854
Sau96I	GGNCC	2 cut(s)	54, 99
ScaI	AGTACT	1 cut(s)	1138
SchI	GAGTC	4 cut(s)	412, 578, 689, 762
ScrFI	CCNGG	4 cut(s)	602, 737, 1098, 1281
SfaNI	GCATC	2 cut(s)	654, 971
SfcI	CTRYAG	1 cut(s)	357
SfoI	GGCGCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	2 cut(s)	788, 801
SmlI	CTYRAG	2 cut(s)	329, 728
SmoI	CTYRAG	2 cut(s)	329, 728
Sse9I	AATT	7 cut(s)	27, 167, 259, 301, 618, 808, 1152
SspDI	GGCGCC	1 cut(s)	292
SspI	AATATT	2 cut(s)	831, 844
StyD4I	CCNGG	4 cut(s)	600, 735, 1096, 1279
TaaI	ACNGT	3 cut(s)	175, 771, 1141
TaiI	ACGT	2 cut(s)	200, 792
TaqI	TCGA	8 cut(s)	105, 194, 200, 231, 342, 575, 756, 1109
TasI	AATT	7 cut(s)	27, 167, 259, 301, 618, 808, 1152
TatI	WGTACW	1 cut(s)	1136
TauI	GCSGC	2 cut(s)	161, 271
TfiI	GAWTC	6 cut(s)	79, 793, 881, 1111, 1288, 1324
Tru1I	TTAA	3 cut(s)	300, 773, 854
Tru9I	TTAA	3 cut(s)	300, 773, 854
TscAI	CASTG	4 cut(s)	571, 774, 790, 1047
TseFI	GTSAC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	3 cut(s)	92, 452, 1025
TspGWI	ACGGA	1 cut(s)	1281
TspRI	CASTG	4 cut(s)	571, 774, 790, 1047
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	1 cut(s)	27
XbaI	TCTAGA	2 cut(s)	115, 695
XceI	RCATGY	1 cut(s)	1219
ZraI	GACGTC	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	1138
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.