MD15G1013300.v1.1

tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
729840 .. 733527
3688 bp
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UTR
Exon/CDS
Intron
MD15G1013300.v1.1.491

Sequence Viewer

Length: 1356 bp
ATGGAGATTTCTGAAAGTGAGCCCCAAATCGAATTATCTGAAAACCCTAGAGCCACCTGGGATGGTTGCTCCGTCTTGCTCGACATCAACGACGGCGACCGTCTGGTTTTCGCCCGCCTCTCCGCCGGAGCGAAAGTGAAAATTGGGAATACAAATTGCTCTCTGCAGCCCTTGATTGGCTGTCCCTTTGGCTCTTTCTTTCGGGTCGAAAACGGAGCTGAAGGCCCGTATTTGGCCCGCTACACTCCGTCCACGGAAGGTAATAATGTTCTGGAAAAAGGTGAAATTCAATCAGTAGATGAGTTTAGAGATAATCGAGCATTAGTCGATAACAATAAAGCGCAGAGCCTAACCGGTGAAGAAATTAACGCAATGCGACAACAGGGTGCAACGGGCGATGAAATAGTTGAAGCTCTCATTGCAAACAGTGCGACGTTTGAGAAGAAAACTGTTTTCTCACAGGAGAAGTATAGGCTTAGGAAGCAAAAGAAGTATGCTCCCATTGTACTTATGAGGCGCCCATACACTAGAAGTATATGTGAGGCGTACTTGAAGAAATATCCGAATAAAATTGGATTCTTGCGGATGGATACATTGTCTCTTCTGCTTTCCATGGCTAATGTTTCTGCAAATTCTGATGTCCTCGTAGTGGATATGGTTGGAGGACTTCTAACAGGTGCTGTGGCGGAGCGTTTAGGAGGTATGGGCTATGTCTGCAATACATATCTTGGTGGCTCACCTTATTCTATGGATATAGCGAGGATATTCAACTTTGGAGATGAAATTTGCAAGAGGATTGTGAGGTCTTCTCTCACTGACCTCTTATCTTTCCAAAACGGACTGCCCAAACCAGTCAGTCAGGACACGGACTCTTGTAACATGGAATTTCAGCCAAATGGCCAAATTTCTTCAGCAGTCAGTACAGAAGAAGTATCTCTTACATCTGAAAATGTGAAATCAGAACCTGTTCCCGAGTCTACCAGTTCTCCAGTAGTCAAAATATCCAAACCCGCAAAATTGGGAGAAAAAGCACCACAGGAAATCATTAGCTCGTGGAAAGAGAATGGTTTCCCTAGTTTAATAATAGCAGCACCGGAGCTGGATGCATGGAGCTTAGTTAAAGAGATCTTGCCACTTATGTCAAATTCTGCTCCTTTTGCTATTTTTCATCAGTACCTTCAGCCTCTTGCAACATGCATGCACAATTTACAGCAGGGGAAAATAGCGATTGGCATGCAAATTTCAGAACCTTGGTTACGCGAATATCAGGTGCTTCCATCAAGAACTCATCCATGCATGCAGATGAATGGATTCGGTGGGTATATTCTCAGCGGGACCAAAATTTCACCGAACTGA

Protein Analysis

452

Amino Acids

49.56

Weight (kDa)

5.44

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gcd10p PF04189 24 - 276 4.4e-60 Gcd10p family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45730
fragaria_vesca FvH4_2g38570
malus_domestica MD08G1013700.v1.1 MD15G1013300.v1.1
prunus_persica Prupe.1G366700_v2.0.a1
pyrus_communis pycom08g01240
rosa_chinensis RchiOBHm_Chr6g0302731
rosa_laevigata RLG00000011143
rosa_multiflora Rmu_sc0009897.1_g000006
rosa_roxburghii Rroxscaffold_7G00165370
rosa_rugosa Rorug06G0316600
rosa_samantha Rh6AG429900 Rh6BG472600 Rh6CG442400 Rh6DG429100
rosa_wichuraiana Rw6G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 516
AccI GTMKAC 1 cut(s) 977
AccII CGCG 1 cut(s) 1260
AciI CCGC 7 cut(s) 115, 123, 238, 583, 686, 1011, 1332
AcoI YGGCCR 1 cut(s) 898
AcsI RAATTY 8 cut(s) 285, 631, 783, 884, 903, 1144, 1239, 1341
AcuI CTGAAG 3 cut(s) 240, 894, 1163
AcyI GRCGYC 1 cut(s) 517
AfaI GTAC 4 cut(s) 507, 548, 922, 1175
AfiI CCNNNNNNNGG 3 cut(s) 176, 232, 649
AgeI ACCGGT 1 cut(s) 353
AgsI TTSAA 4 cut(s) 290, 410, 553, 769
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 5 cut(s) 218, 413, 1050, 1099, 1113
AluI AGCT 5 cut(s) 218, 413, 1050, 1099, 1113
Alw26I GTCTC 1 cut(s) 603
AlwNI CAGNNNCTG 2 cut(s) 680, 965
Ama87I CYCGRG 1 cut(s) 971
AoxI GGCC 3 cut(s) 223, 234, 898
ApeKI GCWGC 2 cut(s) 166, 1088
ApoI RAATTY 8 cut(s) 285, 631, 783, 884, 903, 1144, 1239, 1341
AsiGI ACCGGT 1 cut(s) 353
Asp700I GAANNNNTTC 3 cut(s) 966, 1067, 1310
AspLEI GCGC 2 cut(s) 343, 519
AspS9I GGNCC 3 cut(s) 224, 235, 1335
AsuHPI GGTGA 4 cut(s) 293, 368, 729, 1338
AvaI CYCGRG 1 cut(s) 971
AvaII GGWCC 1 cut(s) 1335
BalI TGGCCA 1 cut(s) 900
BanI GGYRCC 1 cut(s) 516
BanII GRGCYC 1 cut(s) 24
BauI CACGAG 1 cut(s) 1051
BbsI GAAGAC 1 cut(s) 798
BbvI GCAGC 2 cut(s) 178, 1100
BccI CCATC 3 cut(s) 56, 580, 1285
BceAI ACGGC 1 cut(s) 109
BcgI CGANNNNNNTGC 2 cut(s) 1216, 1250
BciT130I CCWGG 1 cut(s) 58
BciVI GTATCC 1 cut(s) 583
BcoDI GTCTC 1 cut(s) 603
BfaI CTAG 3 cut(s) 48, 528, 1074
BfmI CTRYAG 1 cut(s) 164
BfoI RGCGCY 1 cut(s) 520
BfuI GTATCC 1 cut(s) 583
BglII AGATCT 1 cut(s) 1125
BisI GCNGC 2 cut(s) 167, 1089
BlsI GCNGC 2 cut(s) 168, 1090
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 1335
BmeT110I CYCGRG 1 cut(s) 971
BmgT120I GGNCC 3 cut(s) 224, 235, 1335
BmiI GGNNCC 2 cut(s) 518, 1336
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 1093
BpiI GAAGAC 1 cut(s) 798
BplI GAGNNNNNCTC 2 cut(s) 793, 825
BpmI CTGGAG 1 cut(s) 972
Bpu10I CCTNAGC 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 517
BsaJI CCNNGG 4 cut(s) 57, 252, 612, 1250
BsaWI WCCGGW 2 cut(s) 353, 1093
BsaXI ACNNNNNCTCC 4 cut(s) 120, 150, 970, 1000
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 232, 649
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 3 cut(s) 851, 981, 989
Bse3DI GCAATG 2 cut(s) 378, 417
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 4 cut(s) 57, 252, 612, 1250
BseGI GGATG 4 cut(s) 67, 591, 1108, 1288
BseLI CCNNNNNNNGG 3 cut(s) 176, 232, 649
BseMI GCAATG 2 cut(s) 378, 417
BseMII CTCAG 1 cut(s) 1342
BseNI ACTGG 3 cut(s) 851, 981, 989
BseXI GCAGC 2 cut(s) 178, 1100
Bsh1236I CGCG 1 cut(s) 1260
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 3 cut(s) 225, 236, 900
BshNI GGYRCC 1 cut(s) 516
BshTI ACCGGT 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 971
BsiSI CCGG 3 cut(s) 126, 354, 1094
BslFI GGGAC 2 cut(s) 168, 1348
BslI CCNNNNNNNGG 3 cut(s) 176, 232, 649
BsmAI GTCTC 1 cut(s) 603
BsmFI GGGAC 2 cut(s) 168, 1348
BsnI GGCC 3 cut(s) 225, 236, 900
BsoBI CYCGRG 1 cut(s) 971
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 1125
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 7 cut(s) 115, 123, 238, 583, 686, 1011, 1332
BspANI GGCC 3 cut(s) 225, 236, 900
BspCNI CTCAG 1 cut(s) 1341
BspFNI CGCG 1 cut(s) 1260
BspLI GGNNCC 2 cut(s) 518, 1336
BspMAI CTGCAG 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 516
BsrDI GCAATG 2 cut(s) 378, 417
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 3 cut(s) 851, 981, 989
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 4 cut(s) 57, 252, 612, 1250
BssMI GATC 1 cut(s) 1125
BssNI GRCGYC 1 cut(s) 517
BssSI CACGAG 1 cut(s) 1051
BssT1I CCWWGG 2 cut(s) 612, 1250
Bst2BI CACGAG 1 cut(s) 1051
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 3 cut(s) 101, 428, 451
Bst6I CTCTTC 1 cut(s) 606
BstACI GRCGYC 1 cut(s) 517
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 5 cut(s) 115, 238, 1199, 1235, 1298
BstDEI CTNAG 3 cut(s) 476, 1114, 1328
BstDSI CCRYGG 2 cut(s) 252, 612
BstF5I GGATG 4 cut(s) 67, 591, 1108, 1288
BstFNI CGCG 1 cut(s) 1260
BstH2I RGCGCY 1 cut(s) 520
BstHHI GCGC 2 cut(s) 343, 519
BstKTI GATC 1 cut(s) 1128
BstMAI GTCTC 1 cut(s) 603
BstMBI GATC 1 cut(s) 1125
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 5 cut(s) 419, 428, 481, 714, 1157
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 4 cut(s) 1197, 1201, 1237, 1300
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 164
BstUI CGCG 1 cut(s) 1260
BstV1I GCAGC 2 cut(s) 178, 1100
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 1 cut(s) 1125
BstYI RGATCY 1 cut(s) 1125
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 3 cut(s) 225, 236, 900
BtgI CCRYGG 2 cut(s) 252, 612
BtgZI GCGATG 1 cut(s) 411
BtsCI GGATG 4 cut(s) 67, 591, 1108, 1288
BtsIMutI CAGTG 2 cut(s) 433, 813
Cac8I GCNNGC 5 cut(s) 115, 238, 1199, 1235, 1298
CaiI CAGNNNCTG 2 cut(s) 680, 965
CfoI GCGC 2 cut(s) 343, 519
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 3 cut(s) 224, 235, 1335
Csp6I GTAC 4 cut(s) 506, 547, 921, 1174
CspAI ACCGGT 1 cut(s) 353
CviAII CATG 8 cut(s) 613, 880, 1107, 1194, 1198, 1234, 1293, 1297
CviQI GTAC 4 cut(s) 506, 547, 921, 1174
DdeI CTNAG 3 cut(s) 476, 1114, 1328
DinI GGCGCC 1 cut(s) 518
DpnI GATC 1 cut(s) 1127
DpnII GATC 1 cut(s) 1125
EaeI YGGCCR 1 cut(s) 898
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
EciI GGCGGA 2 cut(s) 112, 701
Eco130I CCWWGG 2 cut(s) 612, 1250
Eco24I GRGCYC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 1335
Eco57I CTGAAG 3 cut(s) 240, 894, 1163
Eco88I CYCGRG 1 cut(s) 971
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 2 cut(s) 612, 1250
EcoT22I ATGCAT 3 cut(s) 1108, 1199, 1298
EcoT38I GRGCYC 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 518
EheI GGCGCC 1 cut(s) 518
ErhI CCWWGG 2 cut(s) 612, 1250
FaeI CATG 8 cut(s) 616, 883, 1110, 1197, 1201, 1237, 1296, 1300
FalI AAGNNNNNCTT 2 cut(s) 921, 953
FaqI GGGAC 2 cut(s) 168, 1348
FatI CATG 8 cut(s) 612, 879, 1106, 1193, 1197, 1233, 1292, 1296
FauI CCCGC 4 cut(s) 122, 245, 1018, 1325
FblI GTMKAC 1 cut(s) 977
Fnu4HI GCNGC 2 cut(s) 167, 1089
FokI GGATG 4 cut(s) 74, 598, 1115, 1275
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 167, 1089
FspBI CTAG 3 cut(s) 48, 528, 1074
GlaI GCGC 2 cut(s) 342, 518
GluI GCNGC 2 cut(s) 167, 1089
GsuI CTGGAG 1 cut(s) 972
HaeII RGCGCY 1 cut(s) 520
HaeIII GGCC 3 cut(s) 225, 236, 900
HapII CCGG 3 cut(s) 126, 354, 1094
HhaI GCGC 2 cut(s) 343, 519
Hin1I GRCGYC 1 cut(s) 517
Hin1II CATG 8 cut(s) 616, 883, 1110, 1197, 1201, 1237, 1296, 1300
Hin6I GCGC 2 cut(s) 341, 517
HinP1I GCGC 2 cut(s) 341, 517
HinfI GANTC 4 cut(s) 576, 869, 974, 1311
HpaII CCGG 3 cut(s) 126, 354, 1094
HphI GGTGA 4 cut(s) 293, 368, 729, 1338
Hpy166II GTNNAC 2 cut(s) 252, 978
Hpy188I TCNGA 7 cut(s) 13, 40, 564, 637, 946, 961, 1246
Hpy188III TCNNGA 4 cut(s) 272, 860, 971, 1281
Hpy8I GTNNAC 2 cut(s) 252, 978
Hpy99I CGWCG 2 cut(s) 95, 436
HpyAV CCTTC 3 cut(s) 215, 251, 1187
HpyCH4III ACNGT 3 cut(s) 101, 428, 451
HpyCH4IV ACGT 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 5 cut(s) 419, 428, 481, 714, 1157
HpyF3I CTNAG 3 cut(s) 476, 1114, 1328
HpySE526I ACGT 1 cut(s) 434
Hsp92I GRCGYC 1 cut(s) 517
Hsp92II CATG 8 cut(s) 616, 883, 1110, 1197, 1201, 1237, 1296, 1300
HspAI GCGC 2 cut(s) 341, 517
KasI GGCGCC 1 cut(s) 516
Kzo9I GATC 1 cut(s) 1125
LmnI GCTCC 8 cut(s) 74, 128, 215, 502, 688, 1096, 1110, 1156
Lsp1109I GCAGC 2 cut(s) 178, 1100
LweI GCATC 1 cut(s) 1093
MaeI CTAG 3 cut(s) 48, 528, 1074
MaeII ACGT 1 cut(s) 434
MaeIII GTNAC 2 cut(s) 875, 1254
MalI GATC 1 cut(s) 1127
MboI GATC 1 cut(s) 1125
MboII GAAGA 7 cut(s) 371, 454, 565, 593, 798, 900, 938
MflI RGATCY 1 cut(s) 1125
MhlI GDGCHC 1 cut(s) 24
MlsI TGGCCA 1 cut(s) 900
MluNI TGGCCA 1 cut(s) 900
Mly113I GGCGCC 1 cut(s) 517
MlyI GAGTC 2 cut(s) 863, 983
MmeI TCCRAC 1 cut(s) 640
Mox20I TGGCCA 1 cut(s) 900
Mph1103I ATGCAT 3 cut(s) 1108, 1199, 1298
MroXI GAANNNNTTC 3 cut(s) 966, 1067, 1310
MscI TGGCCA 1 cut(s) 900
MseI TTAA 3 cut(s) 366, 1079, 1119
MslI CAYNNNNRTG 1 cut(s) 1301
Msp20I TGGCCA 1 cut(s) 900
MspA1I CMGCKG 1 cut(s) 1332
MspI CCGG 3 cut(s) 126, 354, 1094
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MvnI CGCG 1 cut(s) 1260
MwoI GCNNNNNNNGC 5 cut(s) 419, 428, 481, 714, 1157
NarI GGCGCC 1 cut(s) 517
NcoI CCATGG 1 cut(s) 612
NdeII GATC 1 cut(s) 1125
NlaIII CATG 8 cut(s) 616, 883, 1110, 1197, 1201, 1237, 1296, 1300
NlaIV GGNNCC 2 cut(s) 518, 1336
NsiI ATGCAT 3 cut(s) 1108, 1199, 1298
NspI RCATGY 4 cut(s) 1197, 1201, 1237, 1300
PaeI GCATGC 3 cut(s) 1201, 1237, 1300
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 3 cut(s) 966, 1067, 1310
PfeI GAWTC 2 cut(s) 576, 1311
PinAI ACCGGT 1 cut(s) 353
PkrI GCNGC 2 cut(s) 168, 1090
PleI GAGTC 2 cut(s) 863, 982
PluTI GGCGCC 1 cut(s) 520
PpsI GAGTC 2 cut(s) 863, 982
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 518, 1336
PspPI GGNCC 3 cut(s) 224, 235, 1335
PsrI GAACNNNNNNTAC 2 cut(s) 1239, 1271
PstI CTGCAG 1 cut(s) 168
PstNI CAGNNNCTG 2 cut(s) 680, 965
PsuI RGATCY 1 cut(s) 1125
RsaI GTAC 4 cut(s) 507, 548, 922, 1175
RsaNI GTAC 4 cut(s) 506, 547, 921, 1174
RseI CAYNNNNRTG 1 cut(s) 1301
SaqAI TTAA 3 cut(s) 366, 1079, 1119
SatI GCNGC 2 cut(s) 167, 1089
Sau3AI GATC 1 cut(s) 1125
Sau96I GGNCC 3 cut(s) 224, 235, 1335
SchI GAGTC 2 cut(s) 863, 983
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 24
SfaNI GCATC 1 cut(s) 1093
SfcI CTRYAG 1 cut(s) 164
SfoI GGCGCC 1 cut(s) 518
SinI GGWCC 1 cut(s) 1335
SmiMI CAYNNNNRTG 1 cut(s) 1301
SphI GCATGC 3 cut(s) 1201, 1237, 1300
SsiI CCGC 7 cut(s) 115, 123, 238, 583, 686, 1011, 1332
SspDI GGCGCC 1 cut(s) 516
SspMI CTAG 3 cut(s) 48, 528, 1074
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 2 cut(s) 612, 1250
TaaI ACNGT 3 cut(s) 101, 428, 451
TaiI ACGT 1 cut(s) 437
TaqI TCGA 5 cut(s) 30, 81, 207, 316, 327
TatI WGTACW 2 cut(s) 505, 920
TfiI GAWTC 2 cut(s) 576, 1311
Tru1I TTAA 3 cut(s) 366, 1079, 1119
Tru9I TTAA 3 cut(s) 366, 1079, 1119
TscAI CASTG 2 cut(s) 433, 820
TseI GCWGC 2 cut(s) 166, 1088
TspDTI ATGAA 4 cut(s) 414, 795, 1157, 1319
TspGWI ACGGA 6 cut(s) 61, 228, 237, 269, 852, 881
TspRI CASTG 2 cut(s) 433, 820
VpaK11BI GGWCC 1 cut(s) 1335
XapI RAATTY 8 cut(s) 285, 631, 783, 884, 903, 1144, 1239, 1341
XceI RCATGY 4 cut(s) 1197, 1201, 1237, 1300
XmiI GTMKAC 1 cut(s) 977
XmnI GAANNNNTTC 3 cut(s) 966, 1067, 1310
XspI CTAG 3 cut(s) 48, 528, 1074
Zsp2I ATGCAT 3 cut(s) 1108, 1199, 1298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.