Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0015480

Physical Location & Seq

Genomic Coordinates Reverse (-)

62111545 .. 62116589

Gene Structure 5045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG429900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTCTGAAAATAAGCTCCACGGCGATGCTGTGGAAAACCCTAGACTCACCTGGGACGGTTGCAGCGTCTTGCTTGACATCAACGACGGCGACCGTTTGGTTTTCTCGCGCCTCTCCGCCGGAGCAAAATTGAAAATTGGGAATAAGAATTGCTCCCTGCAGCCCTTGATTGGCTGCCCCTTCGGTTCCTTTTTTCGAGTCGAAAACGGAGCACAAGGGCCTTATTTGTCAAGATATACTCCCTCCAATGAAGGCAATAGTATTCAAGAACAAGGGGATTGCCAATCGAAAGACGAGTTAAGAGATAATCGAGCATTGGTTGATAATAATAAAGCGCAAAGCCTAACGGGGGATGCCATCAATGAGATGCGACGACAGGGCGCAAGTGGTGATGAAATAGTTGAAGCTCTCATTGCCAACAGTGCGACGTTTGAGAAAAAGACACTGTTCTCACAGGAGAAATATAGGCTTAAGAAGCAAAAAAAGTATGCTCCCATTGTACTTCTCAGGCGGCCTTTCACTAGAAGTATATGTGAGGCGTACTTGAAGAAATATCCGGTTAGAATTGGATTCTTGCGGATGGATACGTTATGTCTGCTGCTTTCCATGGCTAATGTTTCTGCTAATTCCGATGTCCTTGTAGTCGACATGGTTGGAGGGCTTCTTACTGGTGCTGTGGCAGAGCGTTTAGGAGGTACAGGTTATGTCTGCAATACATATCCTGGTGGCTCACCTTATCCTATGGATATAGCGAGGATATTCAACTTTGGAGAAGAAATTTGCAAGAGGATTGTGAGGTCTCCTCTGGCTGACCTTTTCTCCGTCCAGACTGAAAAGTCAAAAGTCTCGAGTCACAATGGGGACTCTTGTAGCATGGAAATTGAATCAAATGAACAAATATCTTCAACGGCTGGCACGGAAGAAGTTTCTCTTGCGTCTGAGAATATGATGTCAGATCTTATTCCTGAAACTACCTATTCTGTAGAAAGAAAATCGAGCAAATCTGCAAAACTAGGAGAAAAAGCACCACATGAAATCTTCAGCTTGTGGAAAGAGAATGGCTTCACTAGTTTAATAATAGCAGCACCAGAGCTGGATACGTGGAGTCTAGTTAAAAAGATATTGCCACTTCTGTCAAATTCTGCTCCTTTTGCTATTTATCACCAGTATCTTCAGGTAATCATGACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0030488 GO:0031515 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gcd10p

Protein Analysis

397

Amino Acids

43.8

Weight (kDa)

6.49

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gcd10p	PF04189	22 - 282	3.1e-58	Gcd10p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45730
fragaria_vesca	FvH4_2g38570
malus_domestica	MD08G1013700.v1.1 MD15G1013300.v1.1
prunus_persica	Prupe.1G366700_v2.0.a1
pyrus_communis	pycom08g01240
rosa_chinensis	RchiOBHm_Chr6g0302731
rosa_laevigata	RLG00000011143
rosa_multiflora	Rmu_sc0009897.1_g000006
rosa_roxburghii	Rroxscaffold_7G00165370
rosa_rugosa	Rorug06G0316600
rosa_samantha	Rh6AG429900 Rh6BG472600 Rh6CG442400 Rh6DG429100
rosa_wichuraiana	Rw6G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	835
AccI	GTMKAC	1 cut(s)	645
AccII	CGCG	1 cut(s)	109
AciI	CCGC	3 cut(s)	117, 511, 577
AcsI	RAATTY	2 cut(s)	777, 1138
AcuI	CTGAAG	2 cut(s)	1024, 1157
AfaI	GTAC	3 cut(s)	501, 542, 697
AfiI	CCNNNNNNNGG	2 cut(s)	170, 349
AflII	CTTAAG	1 cut(s)	470
AgsI	TTSAA	7 cut(s)	133, 266, 404, 547, 763, 884, 906
AhlI	ACTAGT	1 cut(s)	1067
AjnI	CCWGG	2 cut(s)	50, 721
AluBI	AGCT	4 cut(s)	16, 407, 1044, 1093
AluI	AGCT	4 cut(s)	16, 407, 1044, 1093
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	804, 850
Ama87I	CYCGRG	1 cut(s)	847
AoxI	GGCC	2 cut(s)	218, 512
ApeKI	GCWGC	5 cut(s)	63, 160, 174, 598, 1082
ApoI	RAATTY	2 cut(s)	777, 1138
Asp700I	GAANNNNTTC	1 cut(s)	1061
AspLEI	GCGC	3 cut(s)	111, 337, 383
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	4 cut(s)	40, 401, 723, 1154
AvaI	CYCGRG	1 cut(s)	847
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	5 cut(s)	75, 161, 172, 585, 1094
BccI	CCATC	2 cut(s)	365, 574
BceAI	ACGGC	3 cut(s)	37, 103, 924
BciT130I	CCWGG	2 cut(s)	52, 723
BciVI	GTATCC	2 cut(s)	577, 1090
BcoDI	GTCTC	2 cut(s)	804, 850
BcuI	ACTAGT	1 cut(s)	1067
BfaI	CTAG	5 cut(s)	42, 522, 1013, 1068, 1109
BfmI	CTRYAG	2 cut(s)	158, 981
BfrI	CTTAAG	1 cut(s)	470
BfuI	GTATCC	2 cut(s)	577, 1090
BglII	AGATCT	1 cut(s)	955
BisI	GCNGC	6 cut(s)	64, 161, 175, 512, 599, 1083
BlsI	GCNGC	6 cut(s)	65, 162, 176, 513, 600, 1084
Bme1390I	CCNGG	2 cut(s)	52, 723
BmeT110I	CYCGRG	1 cut(s)	847
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	52, 723
BmsI	GCATC	3 cut(s)	16, 343, 357
BplI	GAGNNNNNCTC	2 cut(s)	787, 819
BsaAI	YACGTR	1 cut(s)	1101
BsaI	GGTCTC	1 cut(s)	804
BsaJI	CCNNGG	3 cut(s)	19, 51, 606
BsaWI	WCCGGW	1 cut(s)	556
BsaXI	ACNNNNNCTCC	2 cut(s)	803, 833
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 349
Bse1I	ACTGG	2 cut(s)	673, 1165
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	2 cut(s)	52, 723
BseDI	CCNNGG	3 cut(s)	19, 51, 606
BseGI	GGATG	2 cut(s)	358, 585
BseLI	CCNNNNNNNGG	2 cut(s)	170, 349
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	520, 930
BseNI	ACTGG	2 cut(s)	673, 1165
BseRI	GAGGAG	1 cut(s)	792
BseXI	GCAGC	5 cut(s)	75, 161, 172, 585, 1094
Bsh1236I	CGCG	1 cut(s)	109
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	220, 514
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	847
BsiSI	CCGG	2 cut(s)	120, 557
BslFI	GGGAC	2 cut(s)	68, 875
BslI	CCNNNNNNNGG	2 cut(s)	170, 349
BsmAI	GTCTC	2 cut(s)	804, 850
BsmFI	GGGAC	2 cut(s)	68, 875
BsnI	GGCC	2 cut(s)	220, 514
Bso31I	GGTCTC	1 cut(s)	804
BsoBI	CYCGRG	1 cut(s)	847
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	955
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	3 cut(s)	117, 511, 577
BspANI	GGCC	2 cut(s)	220, 514
BspCNI	CTCAG	2 cut(s)	519, 931
BspFNI	CGCG	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	1182
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	162
BspTI	CTTAAG	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	804
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	673, 1165
BssECI	CCNNGG	3 cut(s)	19, 51, 606
BssMI	GATC	1 cut(s)	955
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	52, 723
Bst4CI	ACNGT	4 cut(s)	59, 95, 422, 447
BstAFI	CTTAAG	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	1101
BstC8I	GCNNGC	1 cut(s)	913
BstDEI	CTNAG	2 cut(s)	506, 939
BstDSI	CCRYGG	2 cut(s)	19, 606
BstF5I	GGATG	2 cut(s)	358, 585
BstFNI	CGCG	1 cut(s)	109
BstHHI	GCGC	3 cut(s)	111, 337, 383
BstKTI	GATC	1 cut(s)	958
BstMAI	GTCTC	2 cut(s)	804, 850
BstMBI	GATC	1 cut(s)	955
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 422, 475, 1151
BstNI	CCWGG	2 cut(s)	52, 723
BstSCI	CCNGG	2 cut(s)	50, 721
BstSFI	CTRYAG	2 cut(s)	158, 981
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	5 cut(s)	75, 161, 172, 585, 1094
BstX2I	RGATCY	1 cut(s)	955
BstYI	RGATCY	1 cut(s)	955
BsuI	GTATCC	2 cut(s)	577, 1090
BsuRI	GGCC	2 cut(s)	220, 514
BtgI	CCRYGG	2 cut(s)	19, 606
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	358, 585
BtsIMutI	CAGTG	2 cut(s)	427, 443
Cac8I	GCNNGC	1 cut(s)	913
CciI	TCATGA	1 cut(s)	1182
CfoI	GCGC	3 cut(s)	111, 337, 383
Cfr13I	GGNCC	1 cut(s)	218
CseI	GACGC	2 cut(s)	55, 924
Csp6I	GTAC	3 cut(s)	500, 541, 696
CviAII	CATG	5 cut(s)	607, 649, 874, 1031, 1183
CviQI	GTAC	3 cut(s)	500, 541, 696
DdeI	CTNAG	2 cut(s)	506, 939
DpnI	GATC	1 cut(s)	957
DpnII	GATC	1 cut(s)	955
DrdI	GACNNNNNNGTC	1 cut(s)	835
DseDI	GACNNNNNNGTC	1 cut(s)	835
EciI	GGCGGA	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	606
Eco31I	GGTCTC	1 cut(s)	804
Eco57I	CTGAAG	2 cut(s)	1024, 1157
Eco88I	CYCGRG	1 cut(s)	847
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	50, 721
EcoT14I	CCWWGG	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	5 cut(s)	610, 652, 877, 1034, 1186
FalI	AAGNNNNNCTT	2 cut(s)	915, 947
FaqI	GGGAC	2 cut(s)	68, 875
FatI	CATG	5 cut(s)	606, 648, 873, 1030, 1182
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	6 cut(s)	64, 161, 175, 512, 599, 1083
FokI	GGATG	2 cut(s)	365, 592
Fsp4HI	GCNGC	6 cut(s)	64, 161, 175, 512, 599, 1083
FspBI	CTAG	5 cut(s)	42, 522, 1013, 1068, 1109
GlaI	GCGC	3 cut(s)	110, 336, 382
GluI	GCNGC	6 cut(s)	64, 161, 175, 512, 599, 1083
HaeIII	GGCC	2 cut(s)	220, 514
HapII	CCGG	2 cut(s)	120, 557
HgaI	GACGC	2 cut(s)	55, 924
HhaI	GCGC	3 cut(s)	111, 337, 383
Hin1II	CATG	5 cut(s)	610, 652, 877, 1034, 1186
Hin6I	GCGC	3 cut(s)	109, 335, 381
HinP1I	GCGC	3 cut(s)	109, 335, 381
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HinfI	GANTC	7 cut(s)	45, 198, 570, 850, 863, 884, 1105
HpaII	CCGG	2 cut(s)	120, 557
HphI	GGTGA	4 cut(s)	40, 401, 723, 1154
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	4 cut(s)	7, 631, 940, 955
Hpy188III	TCNNGA	6 cut(s)	231, 266, 826, 847, 965, 1183
Hpy8I	GTNNAC	1 cut(s)	646
Hpy99I	CGWCG	3 cut(s)	89, 375, 430
HpyAV	CCTTC	2 cut(s)	190, 245
HpyCH4III	ACNGT	4 cut(s)	59, 95, 422, 447
HpyCH4IV	ACGT	3 cut(s)	428, 587, 1100
HpyCH4V	TGCA	5 cut(s)	63, 160, 711, 783, 1007
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 422, 475, 1151
HpyF3I	CTNAG	2 cut(s)	506, 939
HpySE526I	ACGT	3 cut(s)	428, 587, 1100
Hsp92II	CATG	5 cut(s)	610, 652, 877, 1034, 1186
HspAI	GCGC	3 cut(s)	109, 335, 381
Kzo9I	GATC	1 cut(s)	955
LmnI	GCTCC	6 cut(s)	21, 122, 158, 209, 496, 1150
Lsp1109I	GCAGC	5 cut(s)	75, 161, 172, 585, 1094
LweI	GCATC	3 cut(s)	16, 343, 357
MaeI	CTAG	5 cut(s)	42, 522, 1013, 1068, 1109
MaeII	ACGT	3 cut(s)	428, 587, 1100
MaeIII	GTNAC	1 cut(s)	851
MalI	GATC	1 cut(s)	957
MboI	GATC	1 cut(s)	955
MboII	GAAGA	6 cut(s)	559, 785, 894, 932, 1030, 1163
MflI	RGATCY	1 cut(s)	955
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	8 cut(s)	128, 135, 148, 564, 625, 777, 879, 1138
MlyI	GAGTC	5 cut(s)	39, 207, 857, 859, 1114
MmeI	TCCRAC	1 cut(s)	634
MnlI	CCTC	9 cut(s)	122, 253, 529, 650, 686, 747, 780, 789, 813
MroXI	GAANNNNTTC	1 cut(s)	1061
MseI	TTAA	4 cut(s)	299, 471, 1073, 1113
MslI	CAYNNNNRTG	1 cut(s)	24
MspCI	CTTAAG	1 cut(s)	470
MspI	CCGG	2 cut(s)	120, 557
MspR9I	CCNGG	2 cut(s)	52, 723
MvaI	CCWGG	2 cut(s)	52, 723
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	4 cut(s)	413, 422, 475, 1151
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	1 cut(s)	955
NlaIII	CATG	5 cut(s)	610, 652, 877, 1034, 1186
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	851
PaeR7I	CTCGAG	1 cut(s)	847
PagI	TCATGA	1 cut(s)	1182
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	1061
PfeI	GAWTC	2 cut(s)	570, 884
PkrI	GCNGC	6 cut(s)	65, 162, 176, 513, 600, 1084
PleI	GAGTC	5 cut(s)	39, 206, 857, 858, 1113
PpsI	GAGTC	5 cut(s)	39, 206, 857, 858, 1113
Ppu21I	YACGTR	1 cut(s)	1101
Psp6I	CCWGG	2 cut(s)	50, 721
PspGI	CCWGG	2 cut(s)	50, 721
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	955
RsaI	GTAC	3 cut(s)	501, 542, 697
RsaNI	GTAC	3 cut(s)	500, 541, 696
RseI	CAYNNNNRTG	1 cut(s)	24
SalI	GTCGAC	1 cut(s)	644
SaqAI	TTAA	4 cut(s)	299, 471, 1073, 1113
SatI	GCNGC	6 cut(s)	64, 161, 175, 512, 599, 1083
Sau3AI	GATC	1 cut(s)	955
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	5 cut(s)	39, 207, 857, 859, 1114
ScrFI	CCNGG	2 cut(s)	52, 723
SduI	GDGCHC	1 cut(s)	214
SfaNI	GCATC	3 cut(s)	16, 343, 357
SfcI	CTRYAG	2 cut(s)	158, 981
Sfr274I	CTCGAG	1 cut(s)	847
SlaI	CTCGAG	1 cut(s)	847
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	2 cut(s)	470, 847
SmoI	CTYRAG	2 cut(s)	470, 847
SpeI	ACTAGT	1 cut(s)	1067
Sse9I	AATT	8 cut(s)	128, 135, 148, 564, 625, 777, 879, 1138
SsiI	CCGC	3 cut(s)	117, 511, 577
SspMI	CTAG	5 cut(s)	42, 522, 1013, 1068, 1109
StyD4I	CCNGG	2 cut(s)	50, 721
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	4 cut(s)	59, 95, 422, 447
TaiI	ACGT	3 cut(s)	431, 590, 1103
TaqI	TCGA	7 cut(s)	196, 201, 287, 310, 645, 848, 995
TasI	AATT	8 cut(s)	128, 135, 148, 564, 625, 777, 879, 1138
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	1 cut(s)	514
TfiI	GAWTC	2 cut(s)	570, 884
Tru1I	TTAA	4 cut(s)	299, 471, 1073, 1113
Tru9I	TTAA	4 cut(s)	299, 471, 1073, 1113
TscAI	CASTG	2 cut(s)	427, 450
TseFI	GTSAC	1 cut(s)	851
TseI	GCWGC	5 cut(s)	63, 160, 174, 598, 1082
Tsp45I	GTSAC	1 cut(s)	851
TspDTI	ATGAA	4 cut(s)	264, 408, 906, 1047
TspGWI	ACGGA	3 cut(s)	222, 811, 932
TspRI	CASTG	2 cut(s)	427, 450
Vha464I	CTTAAG	1 cut(s)	470
XapI	RAATTY	2 cut(s)	777, 1138
XhoI	CTCGAG	1 cut(s)	847
XmiI	GTMKAC	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	1061
XspI	CTAG	5 cut(s)	42, 522, 1013, 1068, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.