AT2G46430

cyclic nucleotide-gated ion channel 3

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
19057999 .. 19061492
3494 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46430.1

Sequence Viewer

Length: 2121 bp
ATGATGAATCCCCAAAGAAACAAATTCGTAAGGTTTAATGGAAATGATGATGAGTTTTCGACCAAAACTACTAGACCATCAGTATCTTCAGTTATGAAAACCGTTAGACGAAGCTTCGAAAAGGGGTCAGAGAAAATCAGAACCTTTAAGCGGCCCTTAAGCGTTCATTCAAATAAGAATAAAGAAAATAATAAGAAGAAGAAGATACTAAGAGTGATGAATCCGAACGATTCATATCTTCAAAGCTGGAACAAGATTTTCTTGCTTCTCTCTGTTGTGGCTTTAGCCTTTGATCCTCTGTTTTTCTATATCCCCTATGTGAAGCCCGAGCGATTTTGTCTTAATCTAGACAAGAAACTCCAGACAATCGCTTGCGTTTTCCGCACTTTCATCGACGCTTTCTATGTGGTTCACATGCTGTTTCAGTTTCATACCGGTTTCATCACTCCTTCTTCTAGTGGTTTCGGCAGAGGAGAGCTTAATGAGAAACATAAAGATATCGCTTTAAGATACCTCGGCTCATACTTTCTAATCGATCTTCTTTCGATTCTCCCTATTCCTCAGGTAGTTGTTCTAGCTATTGTTCCAAGGATGAGACGACCCGCGTCGCTAGTAGCAAAAGAGCTACTGAAATGGGTAATCTTTTGCCAATATGTTCCGAGGATAGCGAGAATCTATCCGCTTTTCAAGGAAGTAACAAGAACTTCTGGTTTGGTAACTGAAACTGCTTGGGCTGGTGCTGCTTTAAACCTATTCCTCTACATGTTAGCTAGCCATGTTTTTGGGTCTTTTTGGTACTTGATTTCGATAGAAAGGAAAGATAGATGTTGGCGTGAGGCGTGTGCTAAGATACAGAATTGCACTCATGCATACTTATACTGTTCACCAACAGGGGAAGACAATAGGTTATTTTTAAACGGTTCTTGTCCGTTGATCGATCCCGAAGAAATCACAAACTCGACGGTTTTCAACTTTGGTATATTCGCTGATGCATTGCAGTCTGGAGTTGTGGAGTCTAGAGATTTCCCTAAGAAGTTTTTCTACTGTTTCTGGTGGGGTCTCCGCAATCTTAGTGCTTTGGGCCAAAACTTGAAGACGAGTGCCTTTGAAGGAGAGATCATTTTTGCAATAGTCATTTGTATTTCTGGACTAGTCTTGTTTGCTCTCCTCATTGGAAATATGCAGAAATATTTGCAATCAACTACTGTAAGAGTTGAGGAAATGAGAGTGAAAAGGAGAGATGCAGAGCAATGGATGTCTCATCGGATGTTGCCAGACGATCTGAGAAAACGTATCCGTAAATACGAACAGTATAAATGGCAAGAAACCAAAGGAGTTGAGGAAGAAGCTCTTCTCTCTAGTCTTCCAAAAGATCTCAGAAAGGACATTAAACGCCATCTTTGTCTCAAGTTGCTCAAAAAGGTGCCTTGGTTCCAAGCTATGGATGATCGGTTACTAGATGCTCTATGTGCTCGTCTCAAAACGGTTCTTTATACAGAGAAGAGTTACATTGTGCGTGAAGGTGAACCAGTGGAGGATATGTTGTTTATAATGAGAGGAAATTTAATCAGCACCACTACTTATGGTGGCAGAACTGGTTTCTTCAATTCTGTTGACTTAGTTGCTGGTGATTTCTGTGGAGATCTTCTCACTTGGGCATTAGATCCTCTCAGTTCCCAATTCCCTATCTCTAGTAGAACCGTTCAAGCTTTGACAGAAGTCGAAGGCTTTCTTCTCTCAGCTGATGATCTCAAGTTTGTCGCTACTCAGTATCGTCGCCTCCATAGCAAGCAACTCCGACACATGTTCAGGTTTTATTCAGTGCAATGGCAGACATGGGCAGCATGTTTTATACAAGCAGCATGGAAGAGACATTGTAGAAGGAAGCTCTCAAAGGCTTTACGTGAAGAAGAAGGCAAACTACATAACACTCTTCAGAACGATGATTCAGGAGGCAATAAACTTAACTTAGGTGCTGCGATTTATGCGTCGAGGTTTGCTTCTCATGCTCTGAGGAATCTAAGAGCAAATGCAGCAGCCCGAAATTCTAGATTCCCGCACATGTTAACTTTGTTGCCTCAGAAACCAGCCGATCCTGAGTTTCCTATGGATGAAACCTAG

Protein Analysis

706

Amino Acids

81.67

Weight (kDa)

9.57

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 82 - 404 6.5e-23 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1550
AccB1I GGYRCC 1 cut(s) 1423
AccB7I CCANNNNNTGG 1 cut(s) 1441
AccII CGCG 1 cut(s) 605
AciI CCGC 6 cut(s) 151, 382, 603, 680, 1063, 2057
AclWI GGATC 4 cut(s) 287, 932, 1658, 2087
AcsI RAATTY 3 cut(s) 23, 1561, 2044
AcuI CTGAAG 2 cut(s) 72, 1919
AfaI GTAC 1 cut(s) 797
AfiI CCNNNNNNNGG 2 cut(s) 150, 1441
AflII CTTAAG 1 cut(s) 157
AflIII ACRYGT 3 cut(s) 762, 1803, 2061
AgeI ACCGGT 1 cut(s) 434
AgsI TTSAA 8 cut(s) 171, 242, 688, 970, 1093, 1109, 1606, 1706
AhlI ACTAGT 1 cut(s) 1150
Alw21I GWGCWC 1 cut(s) 1474
Alw26I GTCTC 6 cut(s) 589, 1064, 1263, 1409, 1481, 1864
AlwI GGATC 4 cut(s) 287, 932, 1658, 2087
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 2 cut(s) 152, 1081
ApeKI GCWGC 6 cut(s) 740, 1841, 1859, 1976, 2033, 2036
ApoI RAATTY 3 cut(s) 23, 1561, 2044
AsiGI ACCGGT 1 cut(s) 434
Asp700I GAANNNNTTC 3 cut(s) 1037, 1350, 1728
AspS9I GGNCC 2 cut(s) 153, 1081
AsuHPI GGTGA 3 cut(s) 876, 1535, 1640
AsuII TTCGAA 1 cut(s) 117
AsuNHI GCTAGC 1 cut(s) 770
AvaI CYCGRG 1 cut(s) 326
AxyI CCTNAGG 1 cut(s) 561
BanI GGYRCC 1 cut(s) 1423
BarI GAAGNNNNNNTAC 4 cut(s) 1025, 1057, 1905, 1937
BbsI GAAGAC 3 cut(s) 903, 1100, 1355
Bbv12I GWGCWC 1 cut(s) 1474
BbvI GCAGC 6 cut(s) 727, 1853, 1871, 1963, 2045, 2048
BccI CCATC 2 cut(s) 85, 1404
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BciVI GTATCC 1 cut(s) 1304
BcoDI GTCTC 6 cut(s) 589, 1064, 1263, 1409, 1481, 1864
BcuI ACTAGT 1 cut(s) 1150
BfrI CTTAAG 1 cut(s) 157
BfuI GTATCC 1 cut(s) 1304
BglII AGATCT 2 cut(s) 1372, 1642
BisI GCNGC 7 cut(s) 152, 741, 1842, 1860, 1977, 2034, 2037
BlsI GCNGC 7 cut(s) 153, 742, 1843, 1861, 1978, 2035, 2038
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 153, 1081
BmiI GGNNCC 2 cut(s) 1425, 1433
BmsI GCATC 3 cut(s) 979, 1231, 1450
BmtI GCTAGC 1 cut(s) 774
BoxI GACNNNNGTC 2 cut(s) 604, 1718
BpiI GAAGAC 3 cut(s) 903, 1100, 1355
BplI GAGNNNNNCTC 2 cut(s) 1632, 1664
BpmI CTGGAG 2 cut(s) 344, 1023
Bpu14I TTCGAA 1 cut(s) 117
BpuEI CTTGAG 2 cut(s) 1391, 1736
Bsa29I ATCGAT 2 cut(s) 534, 936
BsaAI YACGTR 1 cut(s) 1904
BsaBI GATNNNNATC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 1064
BsaJI CCNNGG 4 cut(s) 514, 587, 659, 1427
BsaWI WCCGGW 1 cut(s) 434
BsaXI ACNNNNNCTCC 2 cut(s) 1526, 1556
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 1441
Bse118I RCCGGY 1 cut(s) 434
Bse1I ACTGG 2 cut(s) 1529, 1600
Bse21I CCTNAGG 1 cut(s) 561
Bse3DI GCAATG 3 cut(s) 992, 1256, 1832
Bse8I GATNNNNATC 1 cut(s) 234
BseCI ATCGAT 2 cut(s) 534, 936
BseDI CCNNGG 4 cut(s) 514, 587, 659, 1427
BseGI GGATG 5 cut(s) 597, 1260, 1272, 1450, 2116
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 150, 1441
BseMI GCAATG 3 cut(s) 992, 1256, 1832
BseMII CTCAG 9 cut(s) 575, 1274, 1390, 1684, 1752, 1781, 2003, 2088, 2093
BseNI ACTGG 2 cut(s) 1529, 1600
BseRI GAGGAG 2 cut(s) 486, 1157
BseXI GCAGC 6 cut(s) 727, 1853, 1871, 1963, 2045, 2048
Bsh1236I CGCG 1 cut(s) 605
BshFI GGCC 2 cut(s) 154, 1083
BshNI GGYRCC 1 cut(s) 1423
BshTI ACCGGT 1 cut(s) 434
BshVI ATCGAT 2 cut(s) 534, 936
BsiHKAI GWGCWC 1 cut(s) 1474
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 435
BslI CCNNNNNNNGG 2 cut(s) 150, 1441
BsmAI GTCTC 6 cut(s) 589, 1064, 1263, 1409, 1481, 1864
BsmBI CGTCTC 2 cut(s) 589, 1481
BsnI GGCC 2 cut(s) 154, 1083
Bso31I GGTCTC 1 cut(s) 1064
BsoBI CYCGRG 1 cut(s) 326
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 1474
BspACI CCGC 6 cut(s) 151, 382, 603, 680, 1063, 2057
BspANI GGCC 2 cut(s) 154, 1083
BspCNI CTCAG 9 cut(s) 574, 1275, 1389, 1683, 1751, 1780, 2004, 2089, 2092
BspDI ATCGAT 2 cut(s) 534, 936
BspFNI CGCG 1 cut(s) 605
BspLI GGNNCC 2 cut(s) 1425, 1433
BspOI GCTAGC 1 cut(s) 774
BspPI GGATC 4 cut(s) 287, 932, 1658, 2087
BspQI GCTCTTC 1 cut(s) 1356
BspT104I TTCGAA 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 1423
BspTI CTTAAG 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 1064
BsrDI GCAATG 3 cut(s) 992, 1256, 1832
BsrFI RCCGGY 1 cut(s) 434
BsrI ACTGG 2 cut(s) 1529, 1600
BssAI RCCGGY 1 cut(s) 434
BssECI CCNNGG 4 cut(s) 514, 587, 659, 1427
BssT1I CCWWGG 2 cut(s) 587, 1427
Bst4CI ACNGT 9 cut(s) 103, 881, 920, 964, 1046, 1207, 1311, 1486, 1702
Bst6I CTCTTC 4 cut(s) 1356, 1496, 1862, 1938
BstAFI CTTAAG 1 cut(s) 157
BstBAI YACGTR 1 cut(s) 1904
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 373, 772, 1790
BstF5I GGATG 5 cut(s) 597, 1260, 1272, 1450, 2116
BstFNI CGCG 1 cut(s) 605
BstMAI GTCTC 6 cut(s) 589, 1064, 1263, 1409, 1481, 1864
BstMWI GCNNNNNNNGC 7 cut(s) 381, 740, 1469, 1785, 1985, 2006, 2033
BstNSI RCATGY 5 cut(s) 418, 766, 1807, 1848, 2065
BstPAI GACNNNNGTC 2 cut(s) 604, 1718
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 6 cut(s) 727, 1853, 1871, 1963, 2045, 2048
BstV2I GAAGAC 3 cut(s) 903, 1100, 1355
BstX2I RGATCY 3 cut(s) 1372, 1642, 1663
BstXI CCANNNNNNTGG 1 cut(s) 782
BstYI RGATCY 3 cut(s) 1372, 1642, 1663
Bsu15I ATCGAT 2 cut(s) 534, 936
Bsu36I CCTNAGG 1 cut(s) 561
BsuI GTATCC 1 cut(s) 1304
BsuRI GGCC 2 cut(s) 154, 1083
BsuTUI ATCGAT 2 cut(s) 534, 936
BtsCI GGATG 5 cut(s) 597, 1260, 1272, 1450, 2116
BtsIMutI CAGTG 2 cut(s) 1536, 1827
Cac8I GCNNGC 3 cut(s) 373, 772, 1790
Cfr10I RCCGGY 1 cut(s) 434
Cfr13I GGNCC 2 cut(s) 153, 1081
ClaI ATCGAT 2 cut(s) 534, 936
CseI GACGC 3 cut(s) 404, 594, 1977
Csp6I GTAC 1 cut(s) 796
CspAI ACCGGT 1 cut(s) 434
CviQI GTAC 1 cut(s) 796
DraI TTTAAA 2 cut(s) 747, 915
Eam1104I CTCTTC 4 cut(s) 1356, 1496, 1862, 1938
EarI CTCTTC 4 cut(s) 1356, 1496, 1862, 1938
Eco130I CCWWGG 2 cut(s) 587, 1427
Eco31I GGTCTC 1 cut(s) 1064
Eco32I GATATC 1 cut(s) 499
Eco57I CTGAAG 2 cut(s) 72, 1919
Eco81I CCTNAGG 1 cut(s) 561
Eco88I CYCGRG 1 cut(s) 326
EcoRV GATATC 1 cut(s) 499
EcoT14I CCWWGG 2 cut(s) 587, 1427
EcoT22I ATGCAT 2 cut(s) 871, 994
ErhI CCWWGG 2 cut(s) 587, 1427
Esp3I CGTCTC 2 cut(s) 589, 1481
FalI AAGNNNNNCTT 8 cut(s) 140, 172, 245, 277, 1335, 1367, 1716, 1748
FauI CCCGC 2 cut(s) 610, 2064
Fnu4HI GCNGC 7 cut(s) 152, 741, 1842, 1860, 1977, 2034, 2037
FokI GGATG 4 cut(s) 604, 1267, 1279, 1457
Fsp4HI GCNGC 7 cut(s) 152, 741, 1842, 1860, 1977, 2034, 2037
GluI GCNGC 7 cut(s) 152, 741, 1842, 1860, 1977, 2034, 2037
GsuI CTGGAG 2 cut(s) 344, 1023
HaeIII GGCC 2 cut(s) 154, 1083
HapII CCGG 1 cut(s) 435
HgaI GACGC 3 cut(s) 404, 594, 1977
HincII GTYRAC 2 cut(s) 1615, 2067
HindII GTYRAC 2 cut(s) 1615, 2067
HindIII AAGCTT 2 cut(s) 112, 1707
HinfI GANTC 9 cut(s) 7, 220, 230, 547, 672, 1013, 1946, 2017, 2052
HpaI GTTAAC 1 cut(s) 2067
HpaII CCGG 1 cut(s) 435
HphI GGTGA 3 cut(s) 876, 1535, 1640
Hpy166II GTNNAC 5 cut(s) 412, 884, 1526, 1615, 2067
Hpy188III TCNNGA 9 cut(s) 347, 361, 941, 1002, 1017, 1146, 1950, 2049, 2096
Hpy8I GTNNAC 5 cut(s) 412, 884, 1526, 1615, 2067
Hpy99I CGWCG 5 cut(s) 398, 610, 964, 1779, 1993
HpyAV CCTTC 6 cut(s) 459, 1103, 1514, 1718, 1875, 1907
HpyCH4III ACNGT 9 cut(s) 103, 881, 920, 964, 1046, 1207, 1311, 1486, 1702
HpyCH4IV ACGT 2 cut(s) 1291, 1903
HpyF10VI GCNNNNNNNGC 7 cut(s) 381, 740, 1469, 1785, 1985, 2006, 2033
HpySE526I ACGT 2 cut(s) 1291, 1903
KspAI GTTAAC 1 cut(s) 2067
LguI GCTCTTC 1 cut(s) 1356
Lsp1109I GCAGC 6 cut(s) 727, 1853, 1871, 1963, 2045, 2048
LweI GCATC 3 cut(s) 979, 1231, 1450
MaeII ACGT 2 cut(s) 1291, 1903
MaeIII GTNAC 4 cut(s) 694, 715, 1452, 1505
MflI RGATCY 3 cut(s) 1372, 1642, 1663
MhlI GDGCHC 1 cut(s) 1474
MluCI AATT 6 cut(s) 23, 856, 1561, 1606, 1679, 2044
MlyI GAGTC 1 cut(s) 1022
MmeI TCCRAC 1 cut(s) 1822
Mph1103I ATGCAT 2 cut(s) 871, 994
MroXI GAANNNNTTC 3 cut(s) 1037, 1350, 1728
MspA1I CMGCKG 1 cut(s) 1742
MspCI CTTAAG 1 cut(s) 157
MspI CCGG 1 cut(s) 435
MvnI CGCG 1 cut(s) 605
MwoI GCNNNNNNNGC 7 cut(s) 381, 740, 1469, 1785, 1985, 2006, 2033
NheI GCTAGC 1 cut(s) 770
NlaIV GGNNCC 2 cut(s) 1425, 1433
NmeAIII GCCGAG 1 cut(s) 495
NsiI ATGCAT 2 cut(s) 871, 994
NspI RCATGY 5 cut(s) 418, 766, 1807, 1848, 2065
NspV TTCGAA 1 cut(s) 117
PciI ACATGT 3 cut(s) 762, 1803, 2061
PciSI GCTCTTC 1 cut(s) 1356
PdmI GAANNNNTTC 3 cut(s) 1037, 1350, 1728
PfeI GAWTC 8 cut(s) 7, 220, 230, 547, 672, 1946, 2017, 2052
PflMI CCANNNNNTGG 1 cut(s) 1441
PinAI ACCGGT 1 cut(s) 434
PkrI GCNGC 7 cut(s) 153, 742, 1843, 1861, 1978, 2035, 2038
PleI GAGTC 1 cut(s) 1021
PpsI GAGTC 1 cut(s) 1021
Ppu21I YACGTR 1 cut(s) 1904
PscI ACATGT 3 cut(s) 762, 1803, 2061
PshAI GACNNNNGTC 2 cut(s) 604, 1718
PsiI TTATAA 1 cut(s) 1550
PspN4I GGNNCC 2 cut(s) 1425, 1433
PspPI GGNCC 2 cut(s) 153, 1081
PsuI RGATCY 3 cut(s) 1372, 1642, 1663
PvuII CAGCTG 1 cut(s) 1742
RsaI GTAC 1 cut(s) 797
RsaNI GTAC 1 cut(s) 796
SapI GCTCTTC 1 cut(s) 1356
SatI GCNGC 7 cut(s) 152, 741, 1842, 1860, 1977, 2034, 2037
Sau96I GGNCC 2 cut(s) 153, 1081
SchI GAGTC 1 cut(s) 1022
SduI GDGCHC 1 cut(s) 1474
SfaNI GCATC 3 cut(s) 979, 1231, 1450
SfuI TTCGAA 1 cut(s) 117
SmlI CTYRAG 3 cut(s) 157, 1406, 1751
SmoI CTYRAG 3 cut(s) 157, 1406, 1751
SpeI ACTAGT 1 cut(s) 1150
Sse9I AATT 6 cut(s) 23, 856, 1561, 1606, 1679, 2044
SsiI CCGC 6 cut(s) 151, 382, 603, 680, 1063, 2057
SspI AATATT 1 cut(s) 1190
StyI CCWWGG 2 cut(s) 587, 1427
TaaI ACNGT 9 cut(s) 103, 881, 920, 964, 1046, 1207, 1311, 1486, 1702
TaiI ACGT 2 cut(s) 1294, 1906
TasI AATT 6 cut(s) 23, 856, 1561, 1606, 1679, 2044
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 8 cut(s) 7, 220, 230, 547, 672, 1946, 2017, 2052
TscAI CASTG 2 cut(s) 1536, 1827
TseI GCWGC 6 cut(s) 740, 1841, 1859, 1976, 2033, 2036
TspDTI ATGAA 8 cut(s) 20, 110, 155, 222, 233, 379, 419, 430
TspGWI ACGGA 2 cut(s) 918, 1286
TspRI CASTG 2 cut(s) 1536, 1827
Van91I CCANNNNNTGG 1 cut(s) 1441
Vha464I CTTAAG 1 cut(s) 157
XapI RAATTY 3 cut(s) 23, 1561, 2044
XbaI TCTAGA 3 cut(s) 346, 1016, 2048
XceI RCATGY 5 cut(s) 418, 766, 1807, 1848, 2065
XmnI GAANNNNTTC 3 cut(s) 1037, 1350, 1728
Zsp2I ATGCAT 2 cut(s) 871, 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.