Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004897

Physical Location & Seq

Genomic Coordinates Reverse (-)

38206531 .. 38210491

Gene Structure 3961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0269500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3876 bp

ATGAAAACTTTGCTACATTTCTTCCTTTCCTTGATCACACTCTGGGTCAGTATCATCATCCCAGCAGTTCACAGCCAGTGTATTAAAGACCAGCAACTATCATTGCTCCAATTCAAGAAAAGCCTCGTGTTCGCTGCTGATTTCGGTCCTTCCACCAAGATTGTTTCTTGGAATGCAAGTACTGATTGTTGTTCCTGGGTGGGCGTCACTTGCAGCCGTAATGGGCGTGTTCTGGGTCTTGACATAAGCAGCCAAGGTATCTCTGCTGGAATTGACAATTCCAGCAGTCTCTTCCATCTTCATTATCTTCAAAGCCTCAATCTGGCGGACAACCGACTTGGCAATTACTCTCAATCAATTCCATCCGCAATCGGAAATCTCCTCAACTTGAGGTATCTGAATTTATCTCTTAATGATTATTCAGGGCAAATTCCCATCCAGATTTCTCGCTTGAGGAGGTTAGTAGTTCTTGATTTTTCTAAAAATTTTGGTGAGTTAAACCTTGGAAGTCCAAATTTACCCATGTTGGTTCACAACTTCACAGAGCTTAGAGAGTTATATCTTGATGGTGTCCTAATATCAGAACAGGGGAGTGAGTGGGGCCGAGCCATATCATCTTCCATTCCCAACCTCAGGGTCCTGAGCATGTTCAATTGTCATCTCTCAGGCCCTTTTCTCGAGTCCCTTGCCAAGCTTCAGTATCTATCTGTAATTAGTTTGCCATTGAACAATATCTCTGCGCCAGTTCCAGGATTCTTTGCCAACTTTTCAAACTTGACTGTCCTGAGTCTCCAGAGATGCTCATTGCATGGAACATTTCCCAAAGAGATCTTTCAGTTACCTTCTCTACAAAGTATTGACCTTTCCTTGAATGACCAACTTGATGGTTCCTTGCCAGAATTCCCAAGGAATGCATCTCTTCAGTACCTGGATCTAATCGGGACAAATTTTTCAGGGTTATTACCAAATTCTATTGGCAACCTCAAAATGCTGTCCACCATAAATATTCAAGGCTGCAATTTCACCGGACCGATCCCCAAGTCAATGACAAACCTTACACAATTGATTTATTTGTTGATGTCTTATAACAATTTGGAAGGTTCAATTCCGTCATTCAGTTGGGCCAAGAATGTTGTCAGCATAGACCTTTCCCACAATGGTCTAACAGGTACTATTAGTTCCACCCACTGGAGAAACCTTACTAAGCTATCTTATCTCAGTTTGGGATCCAATAAGCTCAATGGGAATATCCAAGCATCTCTGTTTTCTCTTCCCCTTTTGGGTTACCTAGATCTTTCCAGCAATCAATTCTCTGGTCCATTCCCTGAAATTTCAAATGTGTCTTCCCACTTGCTGAATGGTCCTGATCTTGATCTTTATTTGAGTAGCAACAATCTCCAAGGGCCACTACCTATGTCTATCTTTAGCTTACGAGGTCTTACCACTCTAGATCTTTCTTCAAATAATTTAAGTGGCTCGTTTCCTCTTGATCGTCTACACCAACTAAGAAATCTTTCTGATCTTGATCTTTCACACAATAACTTGTTTCTTACCCATGATTATACCAATTTATCATATTCCTCATTTTCTCAACTATCTGGGCTGAGCTTGGTGTCATTGAAATTGAGAACATTTCCTAATTTCTTGAGAAATCAATCTAACTTGCTCCATTTGGACCTTTCAGATAACCAGATAAATGGCAAGATACCAAACTGGATTTGGTTTAGTGATCTTAGGTACCTAAATCTTTCTTGCAACTCCCTAGATTCTCTAGAAGTTCCTTCAAACAATCTCAGTAACTTAGAGTACCTTGACCTCCATTCCAACCAGTTTCATGGGCAAATCCCAATTTTTCCATCACCTTACAGTTTCTATTATCTAGATTTCTCGAGAAATTATTTCAGCTCTATCATACCGAGTACCACTGGAGATATGTTTCCTGCAGCTACATTCTTGTCGCTTTCGAGCAATAACCTCAGTGGAATCATTCCAGAATCATTATGCAATTCAGAATCTCTTGAGGTTCTTGATCTGTCCAATAATTCTCTGAGTGGCACGATTCCCCAGTGTTTAGCTACAATGAAGACGCTTGCAGTACTCAATGTAAGGAGAAACAATCTTACATATGTTAATGAATTCTCTCAGAATTGCAGTTTAAAAACTCTGGACATCAGTGGAAATCAGATTCAAGGCCAGTTTCTAAAATCTCTTGTCAACTGCACCCAGTTAGAGGTTTTAAATCTTGGACACAATCTTATAGCAGAACCATTTCCATGCTTTTTGAGGAACACATCCACCTTGCGTGTCCTTATCCTGCGATCCAATAAATTCTATGGGCGCATTGGATGTCGCAAGACTAATGGCACTTGGCCAGTACTTCAAATCATAGACTTAGCTCACAATAATTTGAGTGGTGAAGTACCTGGAACAGCTTTGACAACTTGGCAGGCGATGAGGACTAGCAAAGATAATGCCCCACGGAAGATCAATAACCTTGAAATTGGTTACAGAGGAGTTTATTATAAAGAAGATACAGTCATGGTTAGATACAGTCATGGTTTAGAGATGGAGCTGGTGAATATTTTAACAATCTTCACCTCTATTGACTTCTCATGCAACAAGTTCAACGGATCAATACCGGAGGAAATTGGAGAACTCAAATTATTAGATGCCCTCAACTTGTCCAACAATGCTTTCACAGGTGCAGTTCCATCATCATTATGCAATTCACAATTGCTTAATATTCTTGATCTATCCAATAATTCTTTGAGTGGTGCGGTTCCCGGGTGCTTGATGAATTCTCTAGTACTCAATTTGAGGAGAAACAATCTTACAAATGTTGATGAATTCTCTCATAATTGCAGTTTACAAATGCTAGACATCAGTGGAAATCAGATTCAAGGCCAGTTTTTAAAATCTCTTGTCAACTGCACCCAGTTAGAGGTTTTAAATCTTGGACACAATCTTATAGCAGAACCATTTCCATGCTTTTTGAGGAACACATCCACCTTGCGTGTCCTTATCCTGCGATCCAATAAATTCTATGGGCGCATTGGATGTCGCAAGACTAATGGCACTTGGCCAGTACTTCAAATCATAGACTTAGCTCACAACAATTTTAGTGGTGAAGTACCTGGAAGAGCTTTGACAACTTGGCAGGCCATGAGGACTAGCAAAGATGATGCCCCATCTAAGATCACGTTTGCAATCACGGTTACCAACAAAGGTTTAGAGATGGAGTTTGTGTATGTTTTAACTATCTTCACCTCTATTGACTTCTCGTGCAACAAGTTCAACGGTTCAATACCGGAGGAAATTGGAGAACTCAAATCATTATATGCCCTCAACTTGTCCAACAATGCTTTCATAGATGCAGTTCCATCATCACTAAGTGACTTGAGCCAACTAGAGTCTTTGGACCTCTCGAATAACAGACTGAGTGGTCAAATCCCACCGGAGCTTACAAAACTCACTTTCCTTGAATTCTTGAATCTCTCATATAATCAATTGGTTGGGAGGATACCAAGCGGTGCTCAATTTTCAACATTTGATGCAGCTTCCTTCCAAGGTAACAAAGGATTATGGGGGCCTCCTTTAATAACAGCAGATAATAACACAGGCTTCTCACCACCAAAGCTGGAAGGCAACCATTCAAATCCTGGACAGGAGATTGATTGGGATATTATCTGTCCTGAAATTGGATTTACATGTGGGTTTGGGATTGTCATCGGGTCACTTTTGTTTTGCAAGAGATGGAGGAAATGGTATTACAGAGCTATGTATAACATGCTTCTAAAGATATTCCCTCTGCTGGAACAGAGATTTGGTCATCACAGGAGACATGTTTATGTACATCAGAGATACTGGAGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

1291

Amino Acids

143.79

Weight (kDa)

6.96

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	30 - 72	8.8e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	72 - 291	7.2e-12	Leucine-rich repeat region
LRR_8	PF13855	235 - 291	7.9e-06	Leucine rich repeat
LRR_14	PF23598	305 - 362	1.3e-07	Leucine-rich repeat region
LRR_8	PF13855	377 - 437	3.8e-06	Leucine rich repeat
LRR_8	PF13855	459 - 515	5.6e-06	Leucine rich repeat
LRR_8	PF13855	652 - 707	2.2e-07	Leucine rich repeat
LRR_8	PF13855	672 - 729	5e-08	Leucine rich repeat
LRR_14	PF23598	1101 - 1165	2e-06	Leucine-rich repeat region
LRR_8	PF13855	1111 - 1170	3.7e-07	Leucine rich repeat
LRR_4	PF12799	1135 - 1171	2.6e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01340 AT1G01340 AT2G46430 AT2G46430 AT4G01010 AT4G01010
fragaria_vesca	FvH4_7g16300 FvH4_7g16300
malus_domestica	MD01G1079600.v1.1 MD07G1148400.v1.1
prunus_persica	Prupe.2G186700_v2.0.a1 Prupe.2G186700_v2.0.a1 Prupe.2G186700_v2.0.a1 Prupe.2G186900_v2.0.a1 Prupe.2G186900_v2.0.a1 Prupe.2G186900_v2.0.a1
pyrus_communis	pycom01g10790 pycom07g14740
rosa_chinensis	RchiOBHm_Chr1g0359311
rosa_laevigata	RLG00000027881
rosa_multiflora	Rmu_sc0005090.1_g000001 Rmu_sc0017222.1_g000004
rosa_roxburghii	Rroxscaffold_4G00297110
rosa_rugosa	Rorug01G0269500 Rorug01G0269600
rosa_samantha	Rh1AG283400 Rh1BG249600 Rh1CG267500 Rh1DG278500
rosa_wichuraiana	Rw1G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1086, 2523
AasI	GACNNNNNNGTC	1 cut(s)	3441
Acc65I	GGTACC	1 cut(s)	1737
AccB1I	GGYRCC	1 cut(s)	1737
AccB7I	CCANNNNNTGG	1 cut(s)	1188
AccI	GTMKAC	1 cut(s)	1495
AciI	CCGC	4 cut(s)	326, 366, 2777, 3528
AclWI	GGATC	7 cut(s)	939, 1027, 1221, 1234, 2313, 2638, 3024
AcoI	YGGCCR	2 cut(s)	2369, 3080
AcuI	CTGAAG	2 cut(s)	680, 905
AcyI	GRCGYC	1 cut(s)	204
AdeI	CACNNNGTG	1 cut(s)	3392
AfiI	CCNNNNNNNGG	9 cut(s)	322, 633, 749, 1188, 1280, 2230, 2941, 3698, 3811
AflIII	ACRYGT	2 cut(s)	3707, 3841
AjnI	CCWGG	6 cut(s)	194, 748, 927, 2422, 3133, 3658
AjuI	GAANNNNNNNTTGG	6 cut(s)	2678, 2710, 3347, 3379, 3807, 3839
Alw21I	GWGCWC	1 cut(s)	3535
Alw26I	GTCTC	4 cut(s)	293, 794, 3832, 3862
AlwI	GGATC	7 cut(s)	939, 1027, 1221, 1234, 2313, 2638, 3024
AlwNI	CAGNNNCTG	1 cut(s)	928
Ama87I	CYCGRG	3 cut(s)	677, 1888, 2783
ApeKI	GCWGC	6 cut(s)	134, 213, 249, 1014, 1943, 3554
Asp700I	GAANNNNTTC	3 cut(s)	1513, 2268, 2979
Asp718I	GGTACC	1 cut(s)	1737
AspLEI	GCGC	3 cut(s)	742, 2340, 3051
AsuC2I	CCSGG	2 cut(s)	2784, 2785
AsuHPI	GGTGA	9 cut(s)	503, 1015, 1851, 2426, 2587, 2587, 3137, 3256, 3618
AvaI	CYCGRG	3 cut(s)	677, 1888, 2783
AvaII	GGWCC	7 cut(s)	146, 637, 1028, 1316, 1361, 1675, 3418
AxyI	CCTNAGG	1 cut(s)	632
BalI	TGGCCA	2 cut(s)	2371, 3082
BamHI	GGATCC	1 cut(s)	1226
BanI	GGYRCC	1 cut(s)	1737
BauI	CACGAG	2 cut(s)	125, 3280
BbsI	GAAGAC	2 cut(s)	1335, 2090
Bbv12I	GWGCWC	1 cut(s)	3535
BbvI	GCAGC	6 cut(s)	121, 225, 261, 1001, 1955, 3566
BceAI	ACGGC	1 cut(s)	201
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BciT130I	CCWGG	6 cut(s)	196, 750, 929, 2424, 3135, 3660
BciVI	GTATCC	1 cut(s)	3513
BclI	TGATCA	1 cut(s)	33
BcnI	CCSGG	2 cut(s)	2784, 2785
BcoDI	GTCTC	4 cut(s)	293, 794, 3832, 3862
BfmI	CTRYAG	1 cut(s)	1941
BfuI	GTATCC	1 cut(s)	3513
BglII	AGATCT	3 cut(s)	828, 1291, 1450
BisI	GCNGC	6 cut(s)	135, 214, 250, 1015, 1944, 3555
BlpI	GCTNAGC	1 cut(s)	1604
BlsI	GCNGC	6 cut(s)	136, 215, 251, 1016, 1945, 3556
BmcAI	AGTACT	5 cut(s)	181, 2097, 2376, 2808, 3087
Bme1390I	CCNGG	8 cut(s)	196, 750, 929, 2424, 2784, 2785, 3135, 3660
Bme18I	GGWCC	7 cut(s)	146, 637, 1028, 1316, 1361, 1675, 3418
BmeT110I	CYCGRG	3 cut(s)	677, 1888, 2783
BmiI	GGNNCC	7 cut(s)	602, 638, 889, 1228, 1739, 2781, 3588
BmrFI	CCNGG	8 cut(s)	196, 750, 929, 2424, 2784, 2785, 3135, 3660
BmrI	ACTGGG	3 cut(s)	2059, 2218, 2929
BmsI	GCATC	7 cut(s)	788, 923, 1265, 2659, 3172, 3361, 3541
BmuI	ACTGGG	3 cut(s)	2059, 2218, 2929
BpiI	GAAGAC	2 cut(s)	1335, 2090
BpmI	CTGGAG	3 cut(s)	776, 1210, 1947
Bpu10I	CCTNAGC	1 cut(s)	641
Bpu1102I	GCTNAGC	1 cut(s)	1604
BpuEI	CTTGAG	5 cut(s)	409, 472, 1666, 2039, 3418
BpuMI	CCSGG	2 cut(s)	2784, 2785
BsaBI	GATNNNNATC	3 cut(s)	1371, 1524, 3725
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	8 cut(s)	195, 253, 502, 905, 1399, 2477, 2783, 3565
BsaWI	WCCGGW	4 cut(s)	1025, 2638, 3307, 3454
BsaXI	ACNNNNNCTCC	2 cut(s)	3230, 3260
Bsc4I	CCNNNNNNNGG	9 cut(s)	322, 633, 749, 1188, 1280, 2230, 2941, 3698, 3811
Bse21I	CCTNAGG	1 cut(s)	632
Bse3DI	GCAATG	2 cut(s)	101, 803
Bse8I	GATNNNNATC	3 cut(s)	1371, 1524, 3725
BseBI	CCWGG	6 cut(s)	196, 750, 929, 2424, 3135, 3660
BseDI	CCNNGG	8 cut(s)	195, 253, 502, 905, 1399, 2477, 2783, 3565
BseGI	GGATG	7 cut(s)	57, 362, 435, 2291, 2351, 3002, 3062
BseJI	GATNNNNATC	3 cut(s)	1371, 1524, 3725
BseLI	CCNNNNNNNGG	9 cut(s)	322, 633, 749, 1188, 1280, 2230, 2941, 3698, 3811
BseMI	GCAATG	2 cut(s)	101, 803
BseRI	GAGGAG	4 cut(s)	371, 469, 2526, 2833
BseXI	GCAGC	6 cut(s)	121, 225, 261, 1001, 1955, 3566
BseYI	CCCAGC	1 cut(s)	61
BsgI	GTGCAG	3 cut(s)	2203, 2724, 2914
BshNI	GGYRCC	1 cut(s)	1737
BsiHKAI	GWGCWC	1 cut(s)	3535
BsiHKCI	CYCGRG	3 cut(s)	677, 1888, 2783
BsiSI	CCGG	5 cut(s)	1026, 2639, 2784, 3308, 3455
BslFI	GGGAC	2 cut(s)	667, 955
BslI	CCNNNNNNNGG	9 cut(s)	322, 633, 749, 1188, 1280, 2230, 2941, 3698, 3811
BsmAI	GTCTC	4 cut(s)	293, 794, 3832, 3862
BsmBI	CGTCTC	1 cut(s)	3862
BsmFI	GGGAC	2 cut(s)	667, 955
BsmI	GAATGC	2 cut(s)	178, 916
BsoBI	CYCGRG	3 cut(s)	677, 1888, 2783
Bsp1286I	GDGCHC	1 cut(s)	3535
Bsp1407I	TGTACA	1 cut(s)	3850
Bsp1720I	GCTNAGC	1 cut(s)	1604
BspACI	CCGC	4 cut(s)	326, 366, 2777, 3528
BspLI	GGNNCC	7 cut(s)	602, 638, 889, 1228, 1739, 2781, 3588
BspMAI	CTGCAG	1 cut(s)	1945
BspPI	GGATC	7 cut(s)	939, 1027, 1221, 1234, 2313, 2638, 3024
BspQI	GCTCTTC	1 cut(s)	3133
BspT107I	GGYRCC	1 cut(s)	1737
BsrDI	GCAATG	2 cut(s)	101, 803
BsrGI	TGTACA	1 cut(s)	3850
BssECI	CCNNGG	8 cut(s)	195, 253, 502, 905, 1399, 2477, 2783, 3565
BssNI	GRCGYC	1 cut(s)	204
BssSI	CACGAG	2 cut(s)	125, 3280
BssT1I	CCWWGG	5 cut(s)	253, 502, 905, 1399, 3565
Bst2BI	CACGAG	2 cut(s)	125, 3280
Bst2UI	CCWGG	6 cut(s)	196, 750, 929, 2424, 3135, 3660
Bst4CI	ACNGT	6 cut(s)	781, 1868, 2536, 2552, 3214, 3299
Bst6I	CTCTTC	4 cut(s)	296, 924, 1275, 3133
BstACI	GRCGYC	1 cut(s)	204
BstAUI	TGTACA	1 cut(s)	3850
BstC8I	GCNNGC	3 cut(s)	2091, 2448, 3159
BstDSI	CCRYGG	1 cut(s)	2477
BstEII	GGTNACC	2 cut(s)	1283, 3214
BstF5I	GGATG	7 cut(s)	57, 362, 435, 2291, 2351, 3002, 3062
BstHHI	GCGC	3 cut(s)	742, 2340, 3051
BstMAI	GTCTC	4 cut(s)	293, 794, 3832, 3862
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstNI	CCWGG	6 cut(s)	196, 750, 929, 2424, 3135, 3660
BstNSI	RCATGY	4 cut(s)	649, 3711, 3790, 3845
BstPI	GGTNACC	2 cut(s)	1283, 3214
BstSCI	CCNGG	8 cut(s)	194, 748, 927, 2422, 2782, 2783, 3133, 3658
BstSFI	CTRYAG	1 cut(s)	1941
BstV1I	GCAGC	6 cut(s)	121, 225, 261, 1001, 1955, 3566
BstV2I	GAAGAC	2 cut(s)	1335, 2090
BstX2I	RGATCY	5 cut(s)	828, 931, 1226, 1291, 1450
BstXI	CCANNNNNNTGG	3 cut(s)	884, 1697, 1835
BstYI	RGATCY	5 cut(s)	828, 931, 1226, 1291, 1450
Bsu36I	CCTNAGG	1 cut(s)	632
BsuI	GTATCC	1 cut(s)	3513
BtgI	CCRYGG	1 cut(s)	2477
BtgZI	GCGATG	1 cut(s)	2465
BtsCI	GGATG	7 cut(s)	57, 362, 435, 2291, 2351, 3002, 3062
BtsIMutI	CAGTG	7 cut(s)	83, 1186, 1923, 1984, 2072, 2179, 2890
Cac8I	GCNNGC	3 cut(s)	2091, 2448, 3159
CaiI	CAGNNNCTG	1 cut(s)	928
CfoI	GCGC	3 cut(s)	742, 2340, 3051
Cfr9I	CCCGGG	1 cut(s)	2783
CpoI	CGGWCCG	1 cut(s)	1028
CseI	GACGC	2 cut(s)	193, 2095
CspCI	CAANNNNNGTGG	4 cut(s)	142, 177, 3103, 3138
CspI	CGGWCCG	1 cut(s)	1028
DraI	TTTAAA	4 cut(s)	2157, 2238, 2913, 2949
DraIII	CACNNNGTG	1 cut(s)	3392
DrdI	GACNNNNNNGTC	1 cut(s)	3441
DseDI	GACNNNNNNGTC	1 cut(s)	3441
EaeI	YGGCCR	2 cut(s)	2369, 3080
Eam1104I	CTCTTC	4 cut(s)	296, 924, 1275, 3133
EarI	CTCTTC	4 cut(s)	296, 924, 1275, 3133
EciI	GGCGGA	1 cut(s)	341
Eco130I	CCWWGG	5 cut(s)	253, 502, 905, 1399, 3565
Eco47I	GGWCC	7 cut(s)	146, 637, 1028, 1316, 1361, 1675, 3418
Eco57I	CTGAAG	2 cut(s)	680, 905
Eco81I	CCTNAGG	1 cut(s)	632
Eco88I	CYCGRG	3 cut(s)	677, 1888, 2783
Eco91I	GGTNACC	2 cut(s)	1283, 3214
EcoO109I	RGGNCCY	3 cut(s)	637, 668, 3587
EcoO65I	GGTNACC	2 cut(s)	1283, 3214
EcoRI	GAATTC	5 cut(s)	899, 2135, 2797, 2846, 3482
EcoRII	CCWGG	6 cut(s)	194, 748, 927, 2422, 3133, 3658
EcoT14I	CCWWGG	5 cut(s)	253, 502, 905, 1399, 3565
EcoT22I	ATGCAT	1 cut(s)	916
ErhI	CCWWGG	5 cut(s)	253, 502, 905, 1399, 3565
Esp3I	CGTCTC	1 cut(s)	3862
FaqI	GGGAC	2 cut(s)	667, 955
FauNDI	CATATG	1 cut(s)	2125
FbaI	TGATCA	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	1495
Fnu4HI	GCNGC	6 cut(s)	135, 214, 250, 1015, 1944, 3555
FokI	GGATG	7 cut(s)	44, 349, 422, 2278, 2358, 2989, 3069
Fsp4HI	GCNGC	6 cut(s)	135, 214, 250, 1015, 1944, 3555
GlaI	GCGC	3 cut(s)	741, 2339, 3050
GluI	GCNGC	6 cut(s)	135, 214, 250, 1015, 1944, 3555
GsaI	CCCAGC	1 cut(s)	65
GsuI	CTGGAG	3 cut(s)	776, 1210, 1947
HapII	CCGG	5 cut(s)	1026, 2639, 2784, 3308, 3455
HgaI	GACGC	2 cut(s)	193, 2095
HhaI	GCGC	3 cut(s)	742, 2340, 3051
Hin1I	GRCGYC	1 cut(s)	204
Hin6I	GCGC	3 cut(s)	740, 2338, 3049
HinP1I	GCGC	3 cut(s)	740, 2338, 3049
HincII	GTYRAC	2 cut(s)	2215, 2926
HindII	GTYRAC	2 cut(s)	2215, 2926
HindIII	AAGCTT	1 cut(s)	692
HpaII	CCGG	5 cut(s)	1026, 2639, 2784, 3308, 3455
HphI	GGTGA	9 cut(s)	503, 1015, 1851, 2426, 2587, 2587, 3137, 3256, 3618
Hpy166II	GTNNAC	7 cut(s)	70, 532, 996, 1496, 2215, 2867, 2926
Hpy8I	GTNNAC	7 cut(s)	70, 532, 996, 1496, 2215, 2867, 2926
HpyAV	CCTTC	6 cut(s)	159, 852, 1091, 1791, 3571, 3635
HpyCH4III	ACNGT	6 cut(s)	781, 1868, 2536, 2552, 3214, 3299
HpyCH4IV	ACGT	2 cut(s)	3200, 3871
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
HpySE526I	ACGT	2 cut(s)	3200, 3871
Hsp92I	GRCGYC	1 cut(s)	204
HspAI	GCGC	3 cut(s)	740, 2338, 3049
KpnI	GGTACC	1 cut(s)	1741
Ksp22I	TGATCA	1 cut(s)	33
LguI	GCTCTTC	1 cut(s)	3133
LmnI	GCTCC	4 cut(s)	111, 1671, 2569, 3457
Lsp1109I	GCAGC	6 cut(s)	121, 225, 261, 1001, 1955, 3566
LweI	GCATC	7 cut(s)	788, 923, 1265, 2659, 3172, 3361, 3541
MaeII	ACGT	2 cut(s)	3200, 3871
MaeIII	GTNAC	9 cut(s)	205, 837, 1283, 1796, 2504, 3214, 3392, 3569, 3732
MfeI	CAATTG	4 cut(s)	652, 1061, 2732, 3506
MflI	RGATCY	5 cut(s)	828, 931, 1226, 1291, 1450
MhlI	GDGCHC	1 cut(s)	3535
MlsI	TGGCCA	2 cut(s)	2371, 3082
MluNI	TGGCCA	2 cut(s)	2371, 3082
MlyI	GAGTC	3 cut(s)	689, 796, 3419
MmeI	TCCRAC	3 cut(s)	1848, 2709, 3378
Mox20I	TGGCCA	2 cut(s)	2371, 3082
Mph1103I	ATGCAT	1 cut(s)	916
MroXI	GAANNNNTTC	3 cut(s)	1513, 2268, 2979
MscI	TGGCCA	2 cut(s)	2371, 3082
MslI	CAYNNNNRTG	4 cut(s)	2272, 2719, 2983, 3846
Msp20I	TGGCCA	2 cut(s)	2371, 3082
MspI	CCGG	5 cut(s)	1026, 2639, 2784, 3308, 3455
MspR9I	CCNGG	8 cut(s)	196, 750, 929, 2424, 2784, 2785, 3135, 3660
MunI	CAATTG	4 cut(s)	652, 1061, 2732, 3506
Mva1269I	GAATGC	2 cut(s)	178, 916
MvaI	CCWGG	6 cut(s)	196, 750, 929, 2424, 3135, 3660
MwoI	GCNNNNNNNGC	1 cut(s)	210
NciI	CCSGG	2 cut(s)	2784, 2785
NdeI	CATATG	1 cut(s)	2125
NlaIV	GGNNCC	7 cut(s)	602, 638, 889, 1228, 1739, 2781, 3588
NmeAIII	GCCGAG	1 cut(s)	629
NmuCI	GTSAC	3 cut(s)	205, 3392, 3732
NsiI	ATGCAT	1 cut(s)	916
NspI	RCATGY	4 cut(s)	649, 3711, 3790, 3845
PaeR7I	CTCGAG	2 cut(s)	677, 1888
PciI	ACATGT	2 cut(s)	3707, 3841
PciSI	GCTCTTC	1 cut(s)	3133
PctI	GAATGC	2 cut(s)	178, 916
PdmI	GAANNNNTTC	3 cut(s)	1513, 2268, 2979
PfeI	GAWTC	9 cut(s)	753, 1766, 1983, 1994, 2012, 2059, 2185, 2896, 3490
PflMI	CCANNNNNTGG	1 cut(s)	1188
PfoI	TCCNGGA	2 cut(s)	748, 3658
PkrI	GCNGC	6 cut(s)	136, 215, 251, 1016, 1945, 3556
PleI	GAGTC	3 cut(s)	688, 795, 3418
PpsI	GAGTC	3 cut(s)	688, 795, 3418
PpuMI	RGGWCCY	1 cut(s)	637
PscI	ACATGT	2 cut(s)	3707, 3841
PsiI	TTATAA	2 cut(s)	1086, 2523
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	6 cut(s)	194, 748, 927, 2422, 3133, 3658
PspEI	GGTNACC	2 cut(s)	1283, 3214
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	6 cut(s)	194, 748, 927, 2422, 3133, 3658
PspN4I	GGNNCC	7 cut(s)	602, 638, 889, 1228, 1739, 2781, 3588
PspPPI	RGGWCCY	1 cut(s)	637
PsrI	GAACNNNNNNTAC	2 cut(s)	1162, 1194
PstI	CTGCAG	1 cut(s)	1945
PstNI	CAGNNNCTG	1 cut(s)	928
PsuI	RGATCY	5 cut(s)	828, 931, 1226, 1291, 1450
RseI	CAYNNNNRTG	4 cut(s)	2272, 2719, 2983, 3846
Rsr2I	CGGWCCG	1 cut(s)	1028
RsrII	CGGWCCG	1 cut(s)	1028
SapI	GCTCTTC	1 cut(s)	3133
SatI	GCNGC	6 cut(s)	135, 214, 250, 1015, 1944, 3555
ScaI	AGTACT	5 cut(s)	181, 2097, 2376, 2808, 3087
SchI	GAGTC	3 cut(s)	689, 796, 3419
ScrFI	CCNGG	8 cut(s)	196, 750, 929, 2424, 2784, 2785, 3135, 3660
SduI	GDGCHC	1 cut(s)	3535
SfaNI	GCATC	7 cut(s)	788, 923, 1265, 2659, 3172, 3361, 3541
SfcI	CTRYAG	1 cut(s)	1941
Sfr274I	CTCGAG	2 cut(s)	677, 1888
SinI	GGWCC	7 cut(s)	146, 637, 1028, 1316, 1361, 1675, 3418
SlaI	CTCGAG	2 cut(s)	677, 1888
SmaI	CCCGGG	1 cut(s)	2785
SmiMI	CAYNNNNRTG	4 cut(s)	2272, 2719, 2983, 3846
SmlI	CTYRAG	7 cut(s)	388, 451, 677, 1645, 1888, 2018, 3397
SmoI	CTYRAG	7 cut(s)	388, 451, 677, 1645, 1888, 2018, 3397
SsiI	CCGC	4 cut(s)	326, 366, 2777, 3528
SspI	AATATT	3 cut(s)	1006, 2581, 2743
StyD4I	CCNGG	8 cut(s)	194, 748, 927, 2422, 2782, 2783, 3133, 3658
StyI	CCWWGG	5 cut(s)	253, 502, 905, 1399, 3565
TaaI	ACNGT	6 cut(s)	781, 1868, 2536, 2552, 3214, 3299
TaiI	ACGT	2 cut(s)	3203, 3874
TaqI	TCGA	4 cut(s)	678, 1889, 1964, 3425
TaqII	GACCGA	2 cut(s)	134, 1045
TatI	WGTACW	6 cut(s)	179, 2095, 2374, 2806, 3085, 3850
TfiI	GAWTC	9 cut(s)	753, 1766, 1983, 1994, 2012, 2059, 2185, 2896, 3490
TscAI	CASTG	7 cut(s)	83, 1193, 1930, 1984, 2072, 2179, 2890
TseFI	GTSAC	3 cut(s)	205, 3392, 3732
TseI	GCWGC	6 cut(s)	134, 213, 249, 1014, 1943, 3554
Tsp45I	GTSAC	3 cut(s)	205, 3392, 3732
TspDTI	ATGAA	8 cut(s)	17, 290, 1823, 2096, 2148, 2810, 2859, 3355
TspGWI	ACGGA	3 cut(s)	1098, 2494, 2643
TspMI	CCCGGG	1 cut(s)	2783
TspRI	CASTG	7 cut(s)	83, 1193, 1930, 1984, 2072, 2179, 2890
Van91I	CCANNNNNTGG	1 cut(s)	1188
VpaK11BI	GGWCC	7 cut(s)	146, 637, 1028, 1316, 1361, 1675, 3418
XbaI	TCTAGA	3 cut(s)	1447, 1771, 1879
XceI	RCATGY	4 cut(s)	649, 3711, 3790, 3845
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1355, 1716, 3656
XhoI	CTCGAG	2 cut(s)	677, 1888
XmaI	CCCGGG	1 cut(s)	2783
XmiI	GTMKAC	1 cut(s)	1495
XmnI	GAANNNNTTC	3 cut(s)	1513, 2268, 2979
ZrmI	AGTACT	5 cut(s)	181, 2097, 2376, 2808, 3087
Zsp2I	ATGCAT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.