Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004897

Physical Location & Seq

Genomic Coordinates Forward (+)

51781167 .. 51785868

Gene Structure 4702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G025160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2178 bp

ATGAATCTAAAGGGGACTAAGTTTGTAAGGTTTGCGGATTGGCATTCAGAGGGATCTACAAGTTCTGAGAGGGAATTTTCAACTGATGATGGACGAAATCAAAGAAGCCCCAGGCCATCTGTGAATACAGTATTGAGTAGTATTCGGAGAGGTTTCGATAGGGGTTCAGATAGGTTTAAAAGCTTCAAAAAACCATTAAGTCCCACTAAGCAGCCAGCAAAGGAGTCAGGCCCTCGGAAGAACATTCTCGACCCTCAGGGACCATTTCTTCAGAGTTGGAATAAGATATTTGTGATATCTTGTGTCATAGCTGTGTCATTGGACCCATTGTTTCTTTATACTTCAGTGGTTGATGGCAATAATAAATGCCTTGGTTTGGACAGAAGGCTGCAGATCATTGCTTGCGTTCTTCGTTCATTCACCGATGTTTTCCATATACTTCATATTATTTTTCAGTTCCGCACTGGGTTTATTGCCCCATCTTCTAGAGTATTCGGAAGGGGTGAGCTAAATGATGACCCTGTGGCCATTGCAAAAAGATACTTGTATTCATACTTCATCATAGATGTTCTAGCTATTCTTCCTCTGCCACAGGCTGTAGTTTTTGTCGTAGTCCCTAAAATAGAACGTCCAGTTCCAATGGCCGCAAAGAACTTATTGACGATTGTGATTGTTTGCCAATATGTGCCAAGACTTATACGAATCTATCCGCTATACAAAGAAGTTGAAACAACTTCTGGCTTCCTGACTGAAACAGCGTGGGCTGCAGCTGCATTCAATCTTTTGCTCTACATGTTAGCCAGCCATTTAGTTGGAGCATTATGGTACTTGTTCTCCGTAGAACGAGAGTATAGGTGCTGGCGTGATCATTGTGGAATAGATGTAGAATGTAAGAAATACCTGTACTGTGGCTATGTCGAGGAAACTAACAATGGCGGGGAAATTAATTCGACAATTGTTAACGGGTTAAAAGCTTCTTGCCCTTTTATCAACCCTGAGGACATTAAAAATTCATCTGTGTTCAACTTTGGAATATTTTACGACGCTCTGGAGTCTGGTGTGATGGAGACGACAGATTTTCCAAAGAAATTTTTATACTGCTTCTGGTGGGGTCTGCGCAGCCTTAGTTCTCTAGGTCAAAACCTCAAAACAAGCACTTTTGTTTGGGAGATACTCTTTGCAGTCTTCATTTCTATCTTCGGACTGGTGCTATTTTCATTGCTCATTGGAAATATGCAGAAATTTCTGCAATCAACAACTGTGAGAGTTGAAGAAATGAGAGTGAAAAGGCGAGATGCAGAACAGTGGATGTCCCACCGAATGCTCCCGGAGAACCTGAAGGAAAGGATCAGACGCTATGATCAGTATAAATGGCAAGAAACAAGAGGTGTTGAGGAAGATACTCTAGTTCGTAACCTTCCTAAAGACTTGAGGAAGGACATAAAACGCCATCTTTGCTTGGCTCTTGTTAAGAGAGTGCCAATGTTCGAGAAAATGGATGACCGACTGATGGATGCCCTGTGTGATCATCTCAAGCCAGTTCTTTTCACAGACGACAGCTTCATCATCCGAGAGGGTGACCCAGTTGATGAGATGCTATTTGTTATGCGTGGAAACTTAGCAACTATGACTACTAATGGTGGAAGAACTGGCTTCTTTAACTGTGCTGATCTTAAGGCCGGTGACTTCTGTGGAGAAGAGCTTCTTACATGGGCATTGGATCCAAAATCCACTTCCAATCTTCCCATCTCAACTAGAACAGTGGAAACTAGAACTGAGGTTGAAGCATTTGCTCTCAGGGCTGATCATTTGAAGTTTGTCGCCTCCCAGTTTCGGCGCCTGCACAGCAGGCAGGTCCAACATACTTTCAGGTTTTACTCCATGCAGTGGAGGACATGGGCAGCCTGTTTCATACAAGCAGCTTGGCGCCGGCACTGCAAGAGAAAGCTTGAGAAGTCATTACATGAAGCAGAAGACAAGCTGCATGATGCTTTTGCAAGAGATGCCGGAACCTCACCAAGCCTTGTTGCCACTGTATATGCATCAAGGTTTGCAACCAATGCACTACGCGCCTTGCGACAAAAGGGTGTGCGTGACACTAGACCTTTACCAGCATTGATGCCACTGCTACCTCAGAAGCCCACTGACCCTGATTTTACTGCAGAACATCAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

725

Amino Acids

83.39

Weight (kDa)

9.12

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	97 - 421	6.2e-17	Ion transport protein
cNMP_binding	PF00027	516 - 606	7.5e-06	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01340 AT1G01340 AT2G46430 AT2G46430 AT4G01010 AT4G01010
fragaria_vesca	FvH4_7g16300 FvH4_7g16300
malus_domestica	MD01G1079600.v1.1 MD07G1148400.v1.1
prunus_persica	Prupe.2G186700_v2.0.a1 Prupe.2G186700_v2.0.a1 Prupe.2G186700_v2.0.a1 Prupe.2G186900_v2.0.a1 Prupe.2G186900_v2.0.a1 Prupe.2G186900_v2.0.a1
pyrus_communis	pycom01g10790 pycom07g14740
rosa_chinensis	RchiOBHm_Chr1g0359311
rosa_laevigata	RLG00000027881
rosa_multiflora	Rmu_sc0005090.1_g000001 Rmu_sc0017222.1_g000004
rosa_roxburghii	Rroxscaffold_4G00297110
rosa_rugosa	Rorug01G0269500 Rorug01G0269600
rosa_samantha	Rh1AG283400 Rh1BG249600 Rh1CG267500 Rh1DG278500
rosa_wichuraiana	Rw1G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1118
Acc36I	ACCTGC	1 cut(s)	1843
AccB1I	GGYRCC	2 cut(s)	1836, 1926
AccB7I	CCANNNNNTGG	1 cut(s)	1887
AccII	CGCG	1 cut(s)	2070
AciI	CCGC	5 cut(s)	35, 460, 645, 710, 936
AclWI	GGATC	4 cut(s)	61, 1355, 1715, 1728
AcoI	YGGCCR	2 cut(s)	525, 642
AcsI	RAATTY	4 cut(s)	74, 1009, 1088, 1241
AcuI	CTGAAG	3 cut(s)	254, 327, 1358
AcyI	GRCGYC	2 cut(s)	1837, 1927
AfaI	GTAC	2 cut(s)	827, 905
AfiI	CCNNNNNNNGG	4 cut(s)	376, 1510, 1833, 1887
AflII	CTTAAG	1 cut(s)	1673
AflIII	ACRYGT	1 cut(s)	792
AgsI	TTSAA	8 cut(s)	81, 187, 728, 778, 1024, 1271, 1784, 1813
AjnI	CCWGG	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	1717, 1749
Alw26I	GTCTC	1 cut(s)	1061
AlwI	GGATC	4 cut(s)	61, 1355, 1715, 1728
AoxI	GGCC	5 cut(s)	113, 229, 525, 642, 1677
ApeKI	GCWGC	9 cut(s)	211, 388, 764, 767, 770, 1119, 1901, 1919, 1981
ApoI	RAATTY	4 cut(s)	74, 1009, 1088, 1241
AseI	ATTAAT	1 cut(s)	945
Asp700I	GAANNNNTTC	1 cut(s)	1701
AspLEI	GCGC	4 cut(s)	1119, 1839, 1929, 2072
AspS9I	GGNCC	4 cut(s)	230, 260, 322, 1855
AsuC2I	CCSGG	1 cut(s)	1328
AsuHPI	GGTGA	5 cut(s)	412, 515, 1589, 1694, 2007
AvaII	GGWCC	3 cut(s)	260, 322, 1855
AxyI	CCTNAGG	2 cut(s)	255, 996
BaeI	ACNNNNGTAYC	2 cut(s)	1392, 1425
BalI	TGGCCA	1 cut(s)	527
BamHI	GGATCC	1 cut(s)	1720
BanI	GGYRCC	2 cut(s)	1836, 1926
BarI	GAAGNNNNNNTAC	2 cut(s)	539, 571
BbsI	GAAGAC	2 cut(s)	1177, 1980
BbvI	GCAGC	9 cut(s)	223, 375, 751, 757, 779, 1131, 1913, 1931, 1968
BccI	CCATC	8 cut(s)	83, 124, 347, 487, 1057, 1458, 1504, 1754
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	4 cut(s)	865, 1360, 1525, 1804
BcnI	CCSGG	1 cut(s)	1328
BcoDI	GTCTC	1 cut(s)	1061
BfaI	CTAG	7 cut(s)	486, 572, 1133, 1406, 1755, 1770, 2100
BfmI	CTRYAG	4 cut(s)	389, 597, 765, 2160
BfoI	RGCGCY	2 cut(s)	1840, 1930
BfrI	CTTAAG	1 cut(s)	1673
BfuAI	ACCTGC	1 cut(s)	1843
Bme1390I	CCNGG	2 cut(s)	112, 1328
Bme18I	GGWCC	3 cut(s)	260, 322, 1855
BmgT120I	GGNCC	4 cut(s)	230, 260, 322, 1855
BmiI	GGNNCC	6 cut(s)	261, 324, 1722, 1838, 1928, 2011
BmrFI	CCNGG	2 cut(s)	112, 1328
BmrI	ACTGGG	3 cut(s)	474, 1577, 1822
BmsI	GCATC	7 cut(s)	1285, 1504, 1584, 1978, 1993, 2051, 2109
BmuI	ACTGGG	3 cut(s)	474, 1577, 1822
BpiI	GAAGAC	2 cut(s)	1177, 1980
BpmI	CTGGAG	1 cut(s)	1070
BpuEI	CTTGAG	3 cut(s)	1450, 1517, 1970
BpuMI	CCSGG	1 cut(s)	1328
BsaHI	GRCGYC	2 cut(s)	1837, 1927
BsaJI	CCNNGG	3 cut(s)	110, 233, 370
BsaXI	ACNNNNNCTCC	2 cut(s)	818, 848
Bsc4I	CCNNNNNNNGG	4 cut(s)	376, 1510, 1833, 1887
Bse118I	RCCGGY	2 cut(s)	1679, 1929
Bse1I	ACTGG	7 cut(s)	469, 632, 1209, 1538, 1583, 1654, 1828
Bse21I	CCTNAGG	2 cut(s)	255, 996
Bse3DI	GCAATG	3 cut(s)	396, 528, 1217
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	3 cut(s)	110, 233, 370
BseGI	GGATG	4 cut(s)	1314, 1504, 1519, 1566
BseLI	CCNNNNNNNGG	4 cut(s)	376, 1510, 1833, 1887
BseMI	GCAATG	3 cut(s)	396, 528, 1217
BseMII	CTCAG	6 cut(s)	57, 269, 987, 1767, 1810, 2147
BseNI	ACTGG	7 cut(s)	469, 632, 1209, 1538, 1583, 1654, 1828
BseXI	GCAGC	9 cut(s)	223, 375, 751, 757, 779, 1131, 1913, 1931, 1968
BsgI	GTGCAG	1 cut(s)	1826
Bsh1236I	CGCG	1 cut(s)	2070
BshFI	GGCC	5 cut(s)	115, 231, 527, 644, 1679
BshNI	GGYRCC	2 cut(s)	1836, 1926
BsiSI	CCGG	4 cut(s)	1328, 1680, 1930, 2007
BslFI	GGGAC	5 cut(s)	28, 186, 273, 599, 1297
BslI	CCNNNNNNNGG	4 cut(s)	376, 1510, 1833, 1887
BsmAI	GTCTC	1 cut(s)	1061
BsmBI	CGTCTC	1 cut(s)	1061
BsmFI	GGGAC	5 cut(s)	28, 186, 273, 599, 1297
BsmI	GAATGC	3 cut(s)	43, 773, 1326
BsnI	GGCC	5 cut(s)	115, 231, 527, 644, 1679
Bsp143I	GATC	9 cut(s)	53, 393, 865, 1347, 1360, 1525, 1669, 1720, 1804
BspACI	CCGC	5 cut(s)	35, 460, 645, 710, 936
BspANI	GGCC	5 cut(s)	115, 231, 527, 644, 1679
BspCNI	CTCAG	6 cut(s)	58, 268, 988, 1768, 1809, 2146
BspFNI	CGCG	1 cut(s)	2070
BspLI	GGNNCC	6 cut(s)	261, 324, 1722, 1838, 1928, 2011
BspMAI	CTGCAG	3 cut(s)	393, 769, 2164
BspMI	ACCTGC	1 cut(s)	1843
BspPI	GGATC	4 cut(s)	61, 1355, 1715, 1728
BspQI	GCTCTTC	1 cut(s)	1692
BspT107I	GGYRCC	2 cut(s)	1836, 1926
BspTI	CTTAAG	1 cut(s)	1673
BsrDI	GCAATG	3 cut(s)	396, 528, 1217
BsrFI	RCCGGY	2 cut(s)	1679, 1929
BsrI	ACTGG	7 cut(s)	469, 632, 1209, 1538, 1583, 1654, 1828
BssAI	RCCGGY	2 cut(s)	1679, 1929
BssECI	CCNNGG	3 cut(s)	110, 233, 370
BssMI	GATC	9 cut(s)	53, 393, 865, 1347, 1360, 1525, 1669, 1720, 1804
BssNI	GRCGYC	2 cut(s)	1837, 1927
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	7 cut(s)	130, 908, 1261, 1305, 1664, 1762, 2035
Bst6I	CTCTTC	1 cut(s)	1692
BstACI	GRCGYC	2 cut(s)	1837, 1927
BstAFI	CTTAAG	1 cut(s)	1673
BstAPI	GCANNNNNTGC	2 cut(s)	2003, 2060
BstC8I	GCNNGC	7 cut(s)	216, 403, 802, 860, 1841, 1850, 1931
BstEII	GGTNACC	1 cut(s)	1577
BstF5I	GGATG	4 cut(s)	1314, 1504, 1519, 1566
BstFNI	CGCG	1 cut(s)	2070
BstH2I	RGCGCY	2 cut(s)	1840, 1930
BstHHI	GCGC	4 cut(s)	1119, 1839, 1929, 2072
BstKTI	GATC	9 cut(s)	56, 396, 868, 1350, 1363, 1528, 1672, 1723, 1807
BstMAI	GTCTC	1 cut(s)	1061
BstMBI	GATC	9 cut(s)	53, 393, 865, 1347, 1360, 1525, 1669, 1720, 1804
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	796
BstPI	GGTNACC	1 cut(s)	1577
BstSCI	CCNGG	2 cut(s)	110, 1326
BstSFI	CTRYAG	4 cut(s)	389, 597, 765, 2160
BstUI	CGCG	1 cut(s)	2070
BstV1I	GCAGC	9 cut(s)	223, 375, 751, 757, 779, 1131, 1913, 1931, 1968
BstV2I	GAAGAC	2 cut(s)	1177, 1980
BstX2I	RGATCY	2 cut(s)	53, 1720
BstXI	CCANNNNNNTGG	1 cut(s)	812
BstYI	RGATCY	2 cut(s)	53, 1720
Bsu36I	CCTNAGG	2 cut(s)	255, 996
BsuRI	GGCC	5 cut(s)	115, 231, 527, 644, 1679
BtsCI	GGATG	4 cut(s)	1314, 1504, 1519, 1566
BtsI	GCAGTG	3 cut(s)	1892, 1933, 2123
BtsIMutI	CAGTG	9 cut(s)	351, 462, 1310, 1767, 1892, 1933, 2031, 2123, 2142
BveI	ACCTGC	1 cut(s)	1843
Cac8I	GCNNGC	7 cut(s)	216, 403, 802, 860, 1841, 1850, 1931
CfoI	GCGC	4 cut(s)	1119, 1839, 1929, 2072
Cfr10I	RCCGGY	2 cut(s)	1679, 1929
Cfr13I	GGNCC	4 cut(s)	230, 260, 322, 1855
CseI	GACGC	2 cut(s)	1052, 1362
Csp6I	GTAC	2 cut(s)	826, 904
CviAII	CATG	6 cut(s)	793, 1710, 1882, 1896, 1964, 1985
CviQI	GTAC	2 cut(s)	826, 904
DinI	GGCGCC	2 cut(s)	1838, 1928
DpnI	GATC	9 cut(s)	55, 395, 867, 1349, 1362, 1527, 1671, 1722, 1806
DpnII	GATC	9 cut(s)	53, 393, 865, 1347, 1360, 1525, 1669, 1720, 1804
DraI	TTTAAA	1 cut(s)	178
EaeI	YGGCCR	2 cut(s)	525, 642
Eam1104I	CTCTTC	1 cut(s)	1692
EarI	CTCTTC	1 cut(s)	1692
Eco130I	CCWWGG	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	297
Eco47I	GGWCC	3 cut(s)	260, 322, 1855
Eco57I	CTGAAG	3 cut(s)	254, 327, 1358
Eco81I	CCTNAGG	2 cut(s)	255, 996
Eco91I	GGTNACC	1 cut(s)	1577
EcoO109I	RGGNCCY	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	1577
EcoRII	CCWGG	1 cut(s)	110
EcoRV	GATATC	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	2044
EgeI	GGCGCC	2 cut(s)	1838, 1928
EheI	GGCGCC	2 cut(s)	1838, 1928
ErhI	CCWWGG	1 cut(s)	370
Esp3I	CGTCTC	1 cut(s)	1061
FaeI	CATG	6 cut(s)	796, 1713, 1885, 1899, 1967, 1988
FalI	AAGNNNNNCTT	2 cut(s)	1689, 1721
FaqI	GGGAC	5 cut(s)	28, 186, 273, 599, 1297
FatI	CATG	6 cut(s)	792, 1709, 1881, 1895, 1963, 1984
FauI	CCCGC	1 cut(s)	929
FbaI	TGATCA	4 cut(s)	865, 1360, 1525, 1804
FokI	GGATG	4 cut(s)	1321, 1511, 1526, 1553
FspBI	CTAG	7 cut(s)	486, 572, 1133, 1406, 1755, 1770, 2100
FspI	TGCGCA	1 cut(s)	1118
GlaI	GCGC	4 cut(s)	1118, 1838, 1928, 2071
GsuI	CTGGAG	1 cut(s)	1070
HaeII	RGCGCY	2 cut(s)	1840, 1930
HaeIII	GGCC	5 cut(s)	115, 231, 527, 644, 1679
HapII	CCGG	4 cut(s)	1328, 1680, 1930, 2007
HgaI	GACGC	2 cut(s)	1052, 1362
HhaI	GCGC	4 cut(s)	1119, 1839, 1929, 2072
Hin1I	GRCGYC	2 cut(s)	1837, 1927
Hin1II	CATG	6 cut(s)	796, 1713, 1885, 1899, 1967, 1988
Hin6I	GCGC	4 cut(s)	1117, 1837, 1927, 2070
HinP1I	GCGC	4 cut(s)	1117, 1837, 1927, 2070
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HindIII	AAGCTT	3 cut(s)	181, 972, 1946
HinfI	GANTC	4 cut(s)	4, 224, 702, 1052
HpaI	GTTAAC	1 cut(s)	961
HpaII	CCGG	4 cut(s)	1328, 1680, 1930, 2007
HphI	GGTGA	5 cut(s)	412, 515, 1589, 1694, 2007
Hpy166II	GTNNAC	1 cut(s)	961
Hpy188III	TCNNGA	6 cut(s)	248, 486, 745, 1049, 1489, 2171
Hpy8I	GTNNAC	1 cut(s)	961
Hpy99I	CGWCG	1 cut(s)	1046
HpyAV	CCTTC	5 cut(s)	378, 492, 1333, 1427, 1429
HpyCH4III	ACNGT	7 cut(s)	130, 908, 1261, 1305, 1664, 1762, 2035
HpyCH4IV	ACGT	1 cut(s)	628
HpySE526I	ACGT	1 cut(s)	628
Hsp92I	GRCGYC	2 cut(s)	1837, 1927
Hsp92II	CATG	6 cut(s)	796, 1713, 1885, 1899, 1967, 1988
HspAI	GCGC	4 cut(s)	1117, 1837, 1927, 2070
KasI	GGCGCC	2 cut(s)	1836, 1926
KroI	GCCGGC	1 cut(s)	1929
KroNI	GCCGGC	1 cut(s)	1931
Ksp22I	TGATCA	4 cut(s)	865, 1360, 1525, 1804
KspAI	GTTAAC	1 cut(s)	961
Kzo9I	GATC	9 cut(s)	53, 393, 865, 1347, 1360, 1525, 1669, 1720, 1804
LguI	GCTCTTC	1 cut(s)	1692
LmnI	GCTCC	2 cut(s)	815, 1329
Lsp1109I	GCAGC	9 cut(s)	223, 375, 751, 757, 779, 1131, 1913, 1931, 1968
LweI	GCATC	7 cut(s)	1285, 1504, 1584, 1978, 1993, 2051, 2109
MaeI	CTAG	7 cut(s)	486, 572, 1133, 1406, 1755, 1770, 2100
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	4 cut(s)	1412, 1577, 1682, 2093
MalI	GATC	9 cut(s)	55, 395, 867, 1349, 1362, 1527, 1671, 1722, 1806
MboI	GATC	9 cut(s)	53, 393, 865, 1347, 1360, 1525, 1669, 1720, 1804
MfeI	CAATTG	1 cut(s)	954
MflI	RGATCY	2 cut(s)	53, 1720
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	7 cut(s)	74, 942, 946, 954, 1009, 1088, 1241
MluNI	TGGCCA	1 cut(s)	527
Mly113I	GGCGCC	2 cut(s)	1837, 1927
MlyI	GAGTC	2 cut(s)	233, 1061
MmeI	TCCRAC	3 cut(s)	257, 793, 1882
Mox20I	TGGCCA	1 cut(s)	527
Mph1103I	ATGCAT	1 cut(s)	2044
MroNI	GCCGGC	1 cut(s)	1929
MroXI	GAANNNNTTC	1 cut(s)	1701
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	9 cut(s)	177, 197, 945, 960, 968, 1005, 1470, 1659, 1674
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	770
MspCI	CTTAAG	1 cut(s)	1673
MspI	CCGG	4 cut(s)	1328, 1680, 1930, 2007
MspR9I	CCNGG	2 cut(s)	112, 1328
MunI	CAATTG	1 cut(s)	954
Mva1269I	GAATGC	3 cut(s)	43, 773, 1326
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	2070
NaeI	GCCGGC	1 cut(s)	1931
NarI	GGCGCC	2 cut(s)	1837, 1927
NciI	CCSGG	1 cut(s)	1328
NdeII	GATC	9 cut(s)	53, 393, 865, 1347, 1360, 1525, 1669, 1720, 1804
NgoMIV	GCCGGC	1 cut(s)	1929
NlaIII	CATG	6 cut(s)	796, 1713, 1885, 1899, 1967, 1988
NlaIV	GGNNCC	6 cut(s)	261, 324, 1722, 1838, 1928, 2011
NmuCI	GTSAC	3 cut(s)	1577, 1682, 2093
NsbI	TGCGCA	1 cut(s)	1118
NsiI	ATGCAT	1 cut(s)	2044
NspI	RCATGY	1 cut(s)	796
PciI	ACATGT	1 cut(s)	792
PciSI	GCTCTTC	1 cut(s)	1692
PcsI	WCGNNNNNNNCGW	1 cut(s)	2074
PctI	GAATGC	3 cut(s)	43, 773, 1326
PdiI	GCCGGC	1 cut(s)	1931
PdmI	GAANNNNTTC	1 cut(s)	1701
PfeI	GAWTC	2 cut(s)	4, 702
PflMI	CCANNNNNTGG	1 cut(s)	1887
PfoI	TCCNGGA	1 cut(s)	1326
PleI	GAGTC	2 cut(s)	232, 1060
PluTI	GGCGCC	2 cut(s)	1840, 1930
PpsI	GAGTC	2 cut(s)	232, 1060
PscI	ACATGT	1 cut(s)	792
PshBI	ATTAAT	1 cut(s)	945
Psp6I	CCWGG	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	1577
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	6 cut(s)	261, 324, 1722, 1838, 1928, 2011
PspPI	GGNCC	4 cut(s)	230, 260, 322, 1855
PstI	CTGCAG	3 cut(s)	393, 769, 2164
PsuI	RGATCY	2 cut(s)	53, 1720
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	2 cut(s)	827, 905
RsaNI	GTAC	2 cut(s)	826, 904
RseI	CAYNNNNRTG	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	1692
SaqAI	TTAA	9 cut(s)	177, 197, 945, 960, 968, 1005, 1470, 1659, 1674
Sau3AI	GATC	9 cut(s)	53, 393, 865, 1347, 1360, 1525, 1669, 1720, 1804
Sau96I	GGNCC	4 cut(s)	230, 260, 322, 1855
SchI	GAGTC	2 cut(s)	233, 1061
ScrFI	CCNGG	2 cut(s)	112, 1328
SfaNI	GCATC	7 cut(s)	1285, 1504, 1584, 1978, 1993, 2051, 2109
SfcI	CTRYAG	4 cut(s)	389, 597, 765, 2160
SfoI	GGCGCC	2 cut(s)	1838, 1928
SinI	GGWCC	3 cut(s)	260, 322, 1855
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	4 cut(s)	1429, 1532, 1673, 1949
SmoI	CTYRAG	4 cut(s)	1429, 1532, 1673, 1949
Sse9I	AATT	7 cut(s)	74, 942, 946, 954, 1009, 1088, 1241
SsiI	CCGC	5 cut(s)	35, 460, 645, 710, 936
SspDI	GGCGCC	2 cut(s)	1836, 1926
SspI	AATATT	1 cut(s)	1035
SspMI	CTAG	7 cut(s)	486, 572, 1133, 1406, 1755, 1770, 2100
StyD4I	CCNGG	2 cut(s)	110, 1326
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	7 cut(s)	130, 908, 1261, 1305, 1664, 1762, 2035
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	5 cut(s)	156, 249, 918, 950, 1488
TaqII	GACCGA	1 cut(s)	1518
TasI	AATT	7 cut(s)	74, 942, 946, 954, 1009, 1088, 1241
TatI	WGTACW	1 cut(s)	903
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	2 cut(s)	4, 702
Tru1I	TTAA	9 cut(s)	177, 197, 945, 960, 968, 1005, 1470, 1659, 1674
Tru9I	TTAA	9 cut(s)	177, 197, 945, 960, 968, 1005, 1470, 1659, 1674
TscAI	CASTG	9 cut(s)	351, 469, 1310, 1767, 1892, 1940, 2038, 2130, 2149
TseFI	GTSAC	3 cut(s)	1577, 1682, 2093
TseI	GCWGC	9 cut(s)	211, 388, 764, 767, 770, 1119, 1901, 1919, 1981
Tsp45I	GTSAC	3 cut(s)	1577, 1682, 2093
TspGWI	ACGGA	1 cut(s)	826
TspRI	CASTG	9 cut(s)	351, 469, 1310, 1767, 1892, 1940, 2038, 2130, 2149
Van91I	CCANNNNNTGG	1 cut(s)	1887
Vha464I	CTTAAG	1 cut(s)	1673
VpaK11BI	GGWCC	3 cut(s)	260, 322, 1855
VspI	ATTAAT	1 cut(s)	945
XapI	RAATTY	4 cut(s)	74, 1009, 1088, 1241
XbaI	TCTAGA	1 cut(s)	485
XceI	RCATGY	1 cut(s)	796
XmnI	GAANNNNTTC	1 cut(s)	1701
XspI	CTAG	7 cut(s)	486, 572, 1133, 1406, 1755, 1770, 2100
Zsp2I	ATGCAT	1 cut(s)	2044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.