Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004897

Physical Location & Seq

Genomic Coordinates Forward (+)

50038863 .. 50043284

Gene Structure 4422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG278500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2160 bp

ATGTTTGATGTTCTATCCAGGTTTGATGATTGGCATTCAGAGAGATCTTCAAGTTCTGAGAGGGAATTTTCGACTGATGATGGACGAAAACCAAGAAGAGCTGGGCCATCTGTGAATGCAGTATTGAGTAGTATCAGGAGAGGATTCGATAGGGGTTCAGATAGGTTTAAAAGCTTCAAAAAACCATTAAGTCCCACTTCTGTAGGTAAGCAGCCAGCAACGGAGTCAGGCCCTCGGAAGAACATTCTCGACCCTCAGGAATCATTTCTTCAGAGTTGGAATAAGATATTTGTGATATCCTGTGTCATAGCTGTGTCATTGGACCCATTGTTTCTTTATACTTTAGTGGTTGATGGCAATAAGAAATGCCTTGATTTGGACAGAAGGCTGCAGATCATTGCTTGCGTTCTTCGTTCATTCACCGATGTTTTCCATATACTTCATATTATTTTTCAGTTCCGCACTGGGTTTATTGCCCCATCTTCTAGAGTATTCGGAAGGGGTGAGCTAAATGATGACCCTATGGCCATTGCAAAAAGATATTTGTTTTCATACTTCATTGTAGATGTTCTAGCTATTCTTCCTCTGCCACAGGCTGTAGTTTTTTTCGTAGTCCCTATGATAGAACGCCCAGTTCCAATGGCCGCAAAGAACTTATTGACGATTGTGATCATTTGCCAATATGTGCCAAGACTTATACGAATCTATCCACTATACAAAGAAGTAACAGCAACTTCTGGCTTCCTGACTAAAACAGCATGGGCGGCAGCTGCATTCAATCTTTTGCTCTACATGTTAGCCAGCCATTTAGTTGGAGCATTATGGTACTTGTTCTCCGTAGAACGAGAGTATTGGTGCTGGCGTGATCATTGCGGAAATGATGTACAATGTAAGCAGTCCCTGTACTGTGGCCATGGCGAGGAAAATAAGACGACAATTGTTAACATGTTAAAAGCTTCTTGCCCTTTTATCAACCCTGAGGGCATTACAAATTCATCTGTGTTCAACTTTGGAATATTTTTCGAGGCTCTGGAGTCTGGTGTGATGGAGAAGAAAGATTTTCCAACGAAATTTTTCTACTGCTTCTGGTGGGGTCTGCGCAGCCTTAGTTCTCTAGGTCAAAACCTCAAAACAAGCACTTTTGTTTGGGAGATACTCTTTGCAGTCTTCATTTCTATCTTCGGACTGGTGCTATTTTCATTGCTCATTGGAAATATGCAGAAATTTCTGCAGTCAACTACTCTGAGAGTTGAAGAAATGAGAGTGAAAAGGCGAGATGCAGAACAGTGGATGTCCCACCGAATGCTCCCGGAGAAACTGAGGGAAAGGATCAGACGCTATGATCAGTATAAATGGCAAGAAACAAGAGGTGTTGAGGAAGATACTCTAGTTCGTAACCTTCCGAAAGACTTGAGGAAGGACATAAAACGCCATCTTTGCTTGGCTCTTGTTAGGAGAGTGCCAATGTTCGAGAAAATGGATGACCGACTGATGGATGCCCTGTGTGATCATCTCAAGCCAGTTCTTTTCACAGACAACAGCTTCATCATCCGAGAGGGTGACCCAGTTGATGAGATGCTATTTGTTATGCGTGGAAACTTGGCAACTATGACTACTAATGGTGGAAGAACTGGCTTCTTTAACTGTGCTGATCTTAAGGCCGGTGACTTCTGTGGAGAAGAGCTTCTTACATGGGCATTGGATCCAAAATCCACTTCCAATCTTCCTAGCTCAACTAGAACAGTGGAAGCTAGAACTGAGGTTGAAGCATTTGCTCTCAGGGCTGATGATTTGAAGTTTGTCGCCTCCCAGTTTCGGCGCCTGCACAGCAGGCAGGTCCAACATGCTTTCAGGTTTTACTCCATGCAGTGGAGGACATGGGCAGCCTGTTTCATACAAGCAGCTTGGCGCCGGCACTGCAAGAGAAAGCTTGAGAAGTCATTACATGAAGCAGAAGACAAGCTGCATGATGCTTTTGCAAGAGATGCCGGAACCTCACCAGGCCTTGTTGCCACTGTATATGCATCAAGGTTTGCAGCCAATGCACTACGCGCCTTGCGACAGAAGGGTGTGCGTGACACTAGACCTTTACCAGCATTGATGCCACTGCTACCTCAGAAGCCCGCTGAGCCTGATTTTACTGCAGAACATCAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

719

Amino Acids

82.76

Weight (kDa)

9.19

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	116 - 414	3.5e-14	Ion transport protein
cNMP_binding	PF00027	510 - 601	5.1e-07	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01340 AT1G01340 AT2G46430 AT2G46430 AT4G01010 AT4G01010
fragaria_vesca	FvH4_7g16300 FvH4_7g16300
malus_domestica	MD01G1079600.v1.1 MD07G1148400.v1.1
prunus_persica	Prupe.2G186700_v2.0.a1 Prupe.2G186700_v2.0.a1 Prupe.2G186700_v2.0.a1 Prupe.2G186900_v2.0.a1 Prupe.2G186900_v2.0.a1 Prupe.2G186900_v2.0.a1
pyrus_communis	pycom01g10790 pycom07g14740
rosa_chinensis	RchiOBHm_Chr1g0359311
rosa_laevigata	RLG00000027881
rosa_multiflora	Rmu_sc0005090.1_g000001 Rmu_sc0017222.1_g000004
rosa_roxburghii	Rroxscaffold_4G00297110
rosa_rugosa	Rorug01G0269500 Rorug01G0269600
rosa_samantha	Rh1AG283400 Rh1BG249600 Rh1CG267500 Rh1DG278500
rosa_wichuraiana	Rw1G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1100
Acc36I	ACCTGC	1 cut(s)	1825
AccB1I	GGYRCC	2 cut(s)	1818, 1908
AccB7I	CCANNNNNTGG	1 cut(s)	1869
AccII	CGCG	1 cut(s)	2052
AciI	CCGC	5 cut(s)	460, 645, 764, 873, 2124
AclWI	GGATC	3 cut(s)	1337, 1697, 1710
AcoI	YGGCCR	3 cut(s)	525, 642, 910
AcsI	RAATTY	4 cut(s)	65, 991, 1070, 1223
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	2 cut(s)	1819, 1909
AfaI	GTAC	3 cut(s)	827, 885, 905
AfiI	CCNNNNNNNGG	5 cut(s)	376, 919, 1492, 1815, 1869
AflII	CTTAAG	1 cut(s)	1655
AflIII	ACRYGT	2 cut(s)	792, 945
AgsI	TTSAA	7 cut(s)	51, 178, 778, 1006, 1253, 1766, 1795
AjnI	CCWGG	2 cut(s)	17, 1999
AjuI	GAANNNNNNNTTGG	2 cut(s)	1699, 1731
AlwI	GGATC	3 cut(s)	1337, 1697, 1710
AlwNI	CAGNNNCTG	1 cut(s)	901
AoxI	GGCC	7 cut(s)	104, 229, 525, 642, 910, 1659, 2002
ApeKI	GCWGC	9 cut(s)	211, 388, 767, 770, 1101, 1883, 1901, 1963, 2036
ApoI	RAATTY	4 cut(s)	65, 991, 1070, 1223
Asp700I	GAANNNNTTC	3 cut(s)	264, 1073, 1683
AspLEI	GCGC	4 cut(s)	1101, 1821, 1911, 2054
AspS9I	GGNCC	4 cut(s)	104, 230, 322, 1837
AsuC2I	CCSGG	1 cut(s)	1310
AsuHPI	GGTGA	5 cut(s)	412, 515, 1571, 1676, 1989
AvaII	GGWCC	2 cut(s)	322, 1837
AxyI	CCTNAGG	2 cut(s)	255, 978
BaeI	ACNNNNGTAYC	2 cut(s)	1374, 1407
BalI	TGGCCA	2 cut(s)	527, 912
BamHI	GGATCC	1 cut(s)	1702
BanI	GGYRCC	2 cut(s)	1818, 1908
BbsI	GAAGAC	2 cut(s)	1159, 1962
BbvI	GCAGC	9 cut(s)	223, 375, 757, 779, 1113, 1895, 1913, 1950, 2048
BccI	CCATC	7 cut(s)	74, 115, 347, 487, 1039, 1440, 1486
BciT130I	CCWGG	2 cut(s)	19, 2001
BclI	TGATCA	4 cut(s)	669, 865, 1342, 1507
BcnI	CCSGG	1 cut(s)	1310
BfaI	CTAG	8 cut(s)	486, 572, 1115, 1388, 1728, 1737, 1752, 2082
BfmI	CTRYAG	5 cut(s)	201, 389, 597, 1229, 2142
BfoI	RGCGCY	2 cut(s)	1822, 1912
BfrI	CTTAAG	1 cut(s)	1655
BfuAI	ACCTGC	1 cut(s)	1825
BglII	AGATCT	1 cut(s)	44
BlpI	GCTNAGC	1 cut(s)	2127
Bme1390I	CCNGG	3 cut(s)	19, 1310, 2001
Bme18I	GGWCC	2 cut(s)	322, 1837
BmgT120I	GGNCC	4 cut(s)	104, 230, 322, 1837
BmiI	GGNNCC	5 cut(s)	324, 1704, 1820, 1910, 1993
BmrFI	CCNGG	3 cut(s)	19, 1310, 2001
BmrI	ACTGGG	4 cut(s)	474, 626, 1559, 1804
BmsI	GCATC	7 cut(s)	1267, 1486, 1566, 1960, 1975, 2033, 2091
BmuI	ACTGGG	4 cut(s)	474, 626, 1559, 1804
BpiI	GAAGAC	2 cut(s)	1159, 1962
BpmI	CTGGAG	1 cut(s)	1052
Bpu1102I	GCTNAGC	1 cut(s)	2127
BpuEI	CTTGAG	3 cut(s)	1432, 1499, 1952
BpuMI	CCSGG	1 cut(s)	1310
BsaBI	GATNNNNATC	1 cut(s)	668
BsaHI	GRCGYC	2 cut(s)	1819, 1909
BsaJI	CCNNGG	2 cut(s)	233, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	818, 848
Bsc4I	CCNNNNNNNGG	5 cut(s)	376, 919, 1492, 1815, 1869
Bse118I	RCCGGY	2 cut(s)	1661, 1911
Bse1I	ACTGG	7 cut(s)	469, 632, 1191, 1520, 1565, 1636, 1810
Bse21I	CCTNAGG	2 cut(s)	255, 978
Bse3DI	GCAATG	4 cut(s)	396, 528, 868, 1199
Bse8I	GATNNNNATC	1 cut(s)	668
BseBI	CCWGG	2 cut(s)	19, 2001
BseDI	CCNNGG	2 cut(s)	233, 913
BseGI	GGATG	4 cut(s)	1296, 1486, 1501, 1548
BseJI	GATNNNNATC	1 cut(s)	668
BseLI	CCNNNNNNNGG	5 cut(s)	376, 919, 1492, 1815, 1869
BseMI	GCAATG	4 cut(s)	396, 528, 868, 1199
BseMII	CTCAG	9 cut(s)	48, 269, 969, 1235, 1310, 1749, 1792, 2118, 2129
BseNI	ACTGG	7 cut(s)	469, 632, 1191, 1520, 1565, 1636, 1810
BseXI	GCAGC	9 cut(s)	223, 375, 757, 779, 1113, 1895, 1913, 1950, 2048
BseYI	CCCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	1808
Bsh1236I	CGCG	1 cut(s)	2052
BshFI	GGCC	7 cut(s)	106, 231, 527, 644, 912, 1661, 2004
BshNI	GGYRCC	2 cut(s)	1818, 1908
BsiSI	CCGG	4 cut(s)	1310, 1662, 1912, 1989
BslFI	GGGAC	4 cut(s)	177, 599, 883, 1279
BslI	CCNNNNNNNGG	5 cut(s)	376, 919, 1492, 1815, 1869
BsmFI	GGGAC	4 cut(s)	177, 599, 883, 1279
BsmI	GAATGC	4 cut(s)	34, 121, 773, 1308
BsnI	GGCC	7 cut(s)	106, 231, 527, 644, 912, 1661, 2004
Bsp1407I	TGTACA	1 cut(s)	883
Bsp143I	GATC	9 cut(s)	44, 393, 669, 865, 1329, 1342, 1507, 1651, 1702
Bsp1720I	GCTNAGC	1 cut(s)	2127
Bsp19I	CCATGG	1 cut(s)	913
BspACI	CCGC	5 cut(s)	460, 645, 764, 873, 2124
BspANI	GGCC	7 cut(s)	106, 231, 527, 644, 912, 1661, 2004
BspCNI	CTCAG	9 cut(s)	49, 268, 970, 1236, 1311, 1750, 1791, 2119, 2128
BspFNI	CGCG	1 cut(s)	2052
BspLI	GGNNCC	5 cut(s)	324, 1704, 1820, 1910, 1993
BspMAI	CTGCAG	3 cut(s)	393, 1233, 2146
BspMI	ACCTGC	1 cut(s)	1825
BspPI	GGATC	3 cut(s)	1337, 1697, 1710
BspQI	GCTCTTC	2 cut(s)	91, 1674
BspT107I	GGYRCC	2 cut(s)	1818, 1908
BspTI	CTTAAG	1 cut(s)	1655
BsrDI	GCAATG	4 cut(s)	396, 528, 868, 1199
BsrFI	RCCGGY	2 cut(s)	1661, 1911
BsrGI	TGTACA	1 cut(s)	883
BsrI	ACTGG	7 cut(s)	469, 632, 1191, 1520, 1565, 1636, 1810
BssAI	RCCGGY	2 cut(s)	1661, 1911
BssECI	CCNNGG	2 cut(s)	233, 913
BssMI	GATC	9 cut(s)	44, 393, 669, 865, 1329, 1342, 1507, 1651, 1702
BssNI	GRCGYC	2 cut(s)	1819, 1909
BssT1I	CCWWGG	1 cut(s)	913
Bst2UI	CCWGG	2 cut(s)	19, 2001
Bst4CI	ACNGT	5 cut(s)	908, 1287, 1646, 1744, 2017
Bst6I	CTCTTC	2 cut(s)	91, 1674
BstACI	GRCGYC	2 cut(s)	1819, 1909
BstAFI	CTTAAG	1 cut(s)	1655
BstAPI	GCANNNNNTGC	2 cut(s)	1985, 2042
BstAUI	TGTACA	1 cut(s)	883
BstC8I	GCNNGC	8 cut(s)	216, 403, 802, 860, 1823, 1832, 1913, 2124
BstDSI	CCRYGG	1 cut(s)	913
BstEII	GGTNACC	1 cut(s)	1559
BstF5I	GGATG	4 cut(s)	1296, 1486, 1501, 1548
BstFNI	CGCG	1 cut(s)	2052
BstH2I	RGCGCY	2 cut(s)	1822, 1912
BstHHI	GCGC	4 cut(s)	1101, 1821, 1911, 2054
BstKTI	GATC	9 cut(s)	47, 396, 672, 868, 1332, 1345, 1510, 1654, 1705
BstMBI	GATC	9 cut(s)	44, 393, 669, 865, 1329, 1342, 1507, 1651, 1702
BstNI	CCWGG	2 cut(s)	19, 2001
BstNSI	RCATGY	3 cut(s)	796, 949, 1847
BstPI	GGTNACC	1 cut(s)	1559
BstSCI	CCNGG	3 cut(s)	17, 1308, 1999
BstSFI	CTRYAG	5 cut(s)	201, 389, 597, 1229, 2142
BstUI	CGCG	1 cut(s)	2052
BstV1I	GCAGC	9 cut(s)	223, 375, 757, 779, 1113, 1895, 1913, 1950, 2048
BstV2I	GAAGAC	2 cut(s)	1159, 1962
BstX2I	RGATCY	2 cut(s)	44, 1702
BstXI	CCANNNNNNTGG	1 cut(s)	812
BstYI	RGATCY	2 cut(s)	44, 1702
Bsu36I	CCTNAGG	2 cut(s)	255, 978
BsuRI	GGCC	7 cut(s)	106, 231, 527, 644, 912, 1661, 2004
BtgI	CCRYGG	1 cut(s)	913
BtsCI	GGATG	4 cut(s)	1296, 1486, 1501, 1548
BtsI	GCAGTG	3 cut(s)	1874, 1915, 2105
BtsIMutI	CAGTG	7 cut(s)	462, 1292, 1749, 1874, 1915, 2013, 2105
BveI	ACCTGC	1 cut(s)	1825
Cac8I	GCNNGC	8 cut(s)	216, 403, 802, 860, 1823, 1832, 1913, 2124
CaiI	CAGNNNCTG	1 cut(s)	901
CfoI	GCGC	4 cut(s)	1101, 1821, 1911, 2054
Cfr10I	RCCGGY	2 cut(s)	1661, 1911
Cfr13I	GGNCC	4 cut(s)	104, 230, 322, 1837
CseI	GACGC	1 cut(s)	1344
Csp6I	GTAC	3 cut(s)	826, 884, 904
CviQI	GTAC	3 cut(s)	826, 884, 904
DinI	GGCGCC	2 cut(s)	1820, 1910
DpnI	GATC	9 cut(s)	46, 395, 671, 867, 1331, 1344, 1509, 1653, 1704
DpnII	GATC	9 cut(s)	44, 393, 669, 865, 1329, 1342, 1507, 1651, 1702
DraI	TTTAAA	1 cut(s)	169
EaeI	YGGCCR	3 cut(s)	525, 642, 910
Eam1104I	CTCTTC	2 cut(s)	91, 1674
EarI	CTCTTC	2 cut(s)	91, 1674
Eco130I	CCWWGG	1 cut(s)	913
Eco147I	AGGCCT	1 cut(s)	2004
Eco32I	GATATC	1 cut(s)	297
Eco47I	GGWCC	2 cut(s)	322, 1837
Eco57I	CTGAAG	1 cut(s)	254
Eco81I	CCTNAGG	2 cut(s)	255, 978
Eco91I	GGTNACC	1 cut(s)	1559
EcoO109I	RGGNCCY	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	1559
EcoRII	CCWGG	2 cut(s)	17, 1999
EcoRV	GATATC	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	913
EcoT22I	ATGCAT	1 cut(s)	2026
EgeI	GGCGCC	2 cut(s)	1820, 1910
EheI	GGCGCC	2 cut(s)	1820, 1910
ErhI	CCWWGG	1 cut(s)	913
FalI	AAGNNNNNCTT	4 cut(s)	181, 213, 1671, 1703
FaqI	GGGAC	4 cut(s)	177, 599, 883, 1279
FauI	CCCGC	1 cut(s)	2131
FbaI	TGATCA	4 cut(s)	669, 865, 1342, 1507
FokI	GGATG	4 cut(s)	1303, 1493, 1508, 1535
FspBI	CTAG	8 cut(s)	486, 572, 1115, 1388, 1728, 1737, 1752, 2082
FspI	TGCGCA	1 cut(s)	1100
GlaI	GCGC	4 cut(s)	1100, 1820, 1910, 2053
GsaI	CCCAGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	1052
HaeII	RGCGCY	2 cut(s)	1822, 1912
HaeIII	GGCC	7 cut(s)	106, 231, 527, 644, 912, 1661, 2004
HapII	CCGG	4 cut(s)	1310, 1662, 1912, 1989
HgaI	GACGC	1 cut(s)	1344
HhaI	GCGC	4 cut(s)	1101, 1821, 1911, 2054
Hin1I	GRCGYC	2 cut(s)	1819, 1909
Hin6I	GCGC	4 cut(s)	1099, 1819, 1909, 2052
HinP1I	GCGC	4 cut(s)	1099, 1819, 1909, 2052
HincII	GTYRAC	2 cut(s)	943, 1236
HindII	GTYRAC	2 cut(s)	943, 1236
HindIII	AAGCTT	3 cut(s)	172, 954, 1928
HinfI	GANTC	5 cut(s)	144, 224, 260, 702, 1034
HpaI	GTTAAC	1 cut(s)	943
HpaII	CCGG	4 cut(s)	1310, 1662, 1912, 1989
HphI	GGTGA	5 cut(s)	412, 515, 1571, 1676, 1989
Hpy166II	GTNNAC	2 cut(s)	943, 1236
Hpy188III	TCNNGA	8 cut(s)	136, 248, 257, 486, 745, 1031, 1471, 2153
Hpy8I	GTNNAC	2 cut(s)	943, 1236
HpyAV	CCTTC	5 cut(s)	378, 492, 1409, 1411, 2059
HpyCH4III	ACNGT	5 cut(s)	908, 1287, 1646, 1744, 2017
Hsp92I	GRCGYC	2 cut(s)	1819, 1909
HspAI	GCGC	4 cut(s)	1099, 1819, 1909, 2052
KasI	GGCGCC	2 cut(s)	1818, 1908
KroI	GCCGGC	1 cut(s)	1911
KroNI	GCCGGC	1 cut(s)	1913
Ksp22I	TGATCA	4 cut(s)	669, 865, 1342, 1507
KspAI	GTTAAC	1 cut(s)	943
Kzo9I	GATC	9 cut(s)	44, 393, 669, 865, 1329, 1342, 1507, 1651, 1702
LguI	GCTCTTC	2 cut(s)	91, 1674
LmnI	GCTCC	2 cut(s)	815, 1311
Lsp1109I	GCAGC	9 cut(s)	223, 375, 757, 779, 1113, 1895, 1913, 1950, 2048
LweI	GCATC	7 cut(s)	1267, 1486, 1566, 1960, 1975, 2033, 2091
MaeI	CTAG	8 cut(s)	486, 572, 1115, 1388, 1728, 1737, 1752, 2082
MaeIII	GTNAC	5 cut(s)	724, 1394, 1559, 1664, 2075
MalI	GATC	9 cut(s)	46, 395, 671, 867, 1331, 1344, 1509, 1653, 1704
MboI	GATC	9 cut(s)	44, 393, 669, 865, 1329, 1342, 1507, 1651, 1702
MfeI	CAATTG	1 cut(s)	936
MflI	RGATCY	2 cut(s)	44, 1702
MlsI	TGGCCA	2 cut(s)	527, 912
MluCI	AATT	5 cut(s)	65, 936, 991, 1070, 1223
MluNI	TGGCCA	2 cut(s)	527, 912
Mly113I	GGCGCC	2 cut(s)	1819, 1909
MlyI	GAGTC	2 cut(s)	233, 1043
MmeI	TCCRAC	4 cut(s)	257, 793, 1088, 1864
Mox20I	TGGCCA	2 cut(s)	527, 912
Mph1103I	ATGCAT	1 cut(s)	2026
MroNI	GCCGGC	1 cut(s)	1911
MroXI	GAANNNNTTC	3 cut(s)	264, 1073, 1683
MscI	TGGCCA	2 cut(s)	527, 912
MseI	TTAA	6 cut(s)	168, 188, 942, 950, 1641, 1656
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	2 cut(s)	527, 912
MspA1I	CMGCKG	2 cut(s)	770, 2126
MspCI	CTTAAG	1 cut(s)	1655
MspI	CCGG	4 cut(s)	1310, 1662, 1912, 1989
MspR9I	CCNGG	3 cut(s)	19, 1310, 2001
MunI	CAATTG	1 cut(s)	936
Mva1269I	GAATGC	4 cut(s)	34, 121, 773, 1308
MvaI	CCWGG	2 cut(s)	19, 2001
MvnI	CGCG	1 cut(s)	2052
NaeI	GCCGGC	1 cut(s)	1913
NarI	GGCGCC	2 cut(s)	1819, 1909
NciI	CCSGG	1 cut(s)	1310
NcoI	CCATGG	1 cut(s)	913
NdeII	GATC	9 cut(s)	44, 393, 669, 865, 1329, 1342, 1507, 1651, 1702
NgoMIV	GCCGGC	1 cut(s)	1911
NlaIV	GGNNCC	5 cut(s)	324, 1704, 1820, 1910, 1993
NmuCI	GTSAC	3 cut(s)	1559, 1664, 2075
NsbI	TGCGCA	1 cut(s)	1100
NsiI	ATGCAT	1 cut(s)	2026
NspI	RCATGY	3 cut(s)	796, 949, 1847
PceI	AGGCCT	1 cut(s)	2004
PciI	ACATGT	2 cut(s)	792, 945
PciSI	GCTCTTC	2 cut(s)	91, 1674
PcsI	WCGNNNNNNNCGW	1 cut(s)	2056
PctI	GAATGC	4 cut(s)	34, 121, 773, 1308
PdiI	GCCGGC	1 cut(s)	1913
PdmI	GAANNNNTTC	3 cut(s)	264, 1073, 1683
PfeI	GAWTC	3 cut(s)	144, 260, 702
PflMI	CCANNNNNTGG	1 cut(s)	1869
PfoI	TCCNGGA	1 cut(s)	1308
PleI	GAGTC	2 cut(s)	232, 1042
PluTI	GGCGCC	2 cut(s)	1822, 1912
PpsI	GAGTC	2 cut(s)	232, 1042
PscI	ACATGT	2 cut(s)	792, 945
Psp6I	CCWGG	2 cut(s)	17, 1999
PspEI	GGTNACC	1 cut(s)	1559
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	17, 1999
PspN4I	GGNNCC	5 cut(s)	324, 1704, 1820, 1910, 1993
PspPI	GGNCC	4 cut(s)	104, 230, 322, 1837
PstI	CTGCAG	3 cut(s)	393, 1233, 2146
PstNI	CAGNNNCTG	1 cut(s)	901
PsuI	RGATCY	2 cut(s)	44, 1702
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	3 cut(s)	827, 885, 905
RsaNI	GTAC	3 cut(s)	826, 884, 904
RseI	CAYNNNNRTG	1 cut(s)	311
SapI	GCTCTTC	2 cut(s)	91, 1674
SaqAI	TTAA	6 cut(s)	168, 188, 942, 950, 1641, 1656
Sau3AI	GATC	9 cut(s)	44, 393, 669, 865, 1329, 1342, 1507, 1651, 1702
Sau96I	GGNCC	4 cut(s)	104, 230, 322, 1837
SchI	GAGTC	2 cut(s)	233, 1043
ScrFI	CCNGG	3 cut(s)	19, 1310, 2001
SfaNI	GCATC	7 cut(s)	1267, 1486, 1566, 1960, 1975, 2033, 2091
SfcI	CTRYAG	5 cut(s)	201, 389, 597, 1229, 2142
SfoI	GGCGCC	2 cut(s)	1820, 1910
SinI	GGWCC	2 cut(s)	322, 1837
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	4 cut(s)	1411, 1514, 1655, 1931
SmoI	CTYRAG	4 cut(s)	1411, 1514, 1655, 1931
Sse9I	AATT	5 cut(s)	65, 936, 991, 1070, 1223
SseBI	AGGCCT	1 cut(s)	2004
SsiI	CCGC	5 cut(s)	460, 645, 764, 873, 2124
SspDI	GGCGCC	2 cut(s)	1818, 1908
SspI	AATATT	1 cut(s)	1017
SspMI	CTAG	8 cut(s)	486, 572, 1115, 1388, 1728, 1737, 1752, 2082
StuI	AGGCCT	1 cut(s)	2004
StyD4I	CCNGG	3 cut(s)	17, 1308, 1999
StyI	CCWWGG	1 cut(s)	913
TaaI	ACNGT	5 cut(s)	908, 1287, 1646, 1744, 2017
TaqI	TCGA	5 cut(s)	71, 147, 249, 1023, 1470
TaqII	GACCGA	1 cut(s)	1500
TasI	AATT	5 cut(s)	65, 936, 991, 1070, 1223
TatI	WGTACW	2 cut(s)	883, 903
TauI	GCSGC	2 cut(s)	647, 767
TfiI	GAWTC	3 cut(s)	144, 260, 702
Tru1I	TTAA	6 cut(s)	168, 188, 942, 950, 1641, 1656
Tru9I	TTAA	6 cut(s)	168, 188, 942, 950, 1641, 1656
TscAI	CASTG	7 cut(s)	469, 1292, 1749, 1874, 1922, 2020, 2112
TseFI	GTSAC	3 cut(s)	1559, 1664, 2075
TseI	GCWGC	9 cut(s)	211, 388, 767, 770, 1101, 1883, 1901, 1963, 2036
Tsp45I	GTSAC	3 cut(s)	1559, 1664, 2075
TspGWI	ACGGA	2 cut(s)	236, 826
TspRI	CASTG	7 cut(s)	469, 1292, 1749, 1874, 1922, 2020, 2112
Van91I	CCANNNNNTGG	1 cut(s)	1869
Vha464I	CTTAAG	1 cut(s)	1655
VpaK11BI	GGWCC	2 cut(s)	322, 1837
XapI	RAATTY	4 cut(s)	65, 991, 1070, 1223
XbaI	TCTAGA	1 cut(s)	485
XceI	RCATGY	3 cut(s)	796, 949, 1847
XmnI	GAANNNNTTC	3 cut(s)	264, 1073, 1683
XspI	CTAG	8 cut(s)	486, 572, 1115, 1388, 1728, 1737, 1752, 2082
Zsp2I	ATGCAT	1 cut(s)	2026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.