RchiOBHm_Chr1g0359311

cyclic nucleotide-gated ion channel

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
51329872 .. 51333325
3454 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58437

Sequence Viewer

Length: 1695 bp
ATGAATCTAAAGGGGACTAAGTTTGTAAGGTTTGCGGATTGGCATTCAGAGGGATCTACAAGTTCTGAGAGGGAATTTTCAACTGATGATGGACGAAATCCAAGAAGCCCCAGGCCATCTGTGAATGCAGTATTGAGTAGTATTCGGAGAGGTTTCGATAGGGGTTCAGATAGGTTTAAAAGCTTCAAAAAACCATTAAGTCCCACTAAGCAGCCAGCAAAGGAGTCAGGCCCTGGGAAGAACATTCTCGACCCTCAGGGATCATTTCTTCAGAGTTGGAATAAGATATTTGTGATATCTTGTGTCATAGCTGTGTCATTGGACCCATTGTTTCTTTATACTTCAGTGGTTGATGGCAATAATAAATGCCTTGGTTTGGACAGAAGGCTGCAGATCATTGCTTGCGTTCTTCGTTCATTCACCGATGTTTTCCATATACTTCATATTATTTTTCAGTTCCGCACTGGGTTTATTGCCCCATCTTCTAGAGTATTCGGAAGGGGTGAGCTAAATGATGACCCTGTGGCCATTGCAAAAAGATACTTGTATTCATACTTCATCATAGATGTTCTAGCTATTCTTCCTCTGCCACAGGCTGTAGTTTTTGTCGTAGTCCCTAAAATAGAACGTCCAGTTCCAATGGCCGCAAAGAACTTATTGACGATTGTGATTGTTTGCCAATATGTGCCAAGACTTATACGAATCTATCCGCTATACAAAGAAGTTGAAACAACTTCTGGCTTCCTGACTGAAACAGCGTGGGCTGCAGCTGCATTCAATCTTTTGCTCTACATGTTAGCCAGCCATTTAGTTGGAGCATTATGGTACTTGTTCTCCGTAGAACGAGAGTATAGGTGCTGGCGTGATCATTGTGGAATAGATGTAAAATGTAAGAAATACCTATACTGTGGCTATGTCGAGGAAAATAACTATGGCGGGGAAAATAAGACGACAATTGTTAACGGGTTAAAAGCTTCTTGCCCTTTTATCAACCCTGAGGACATTAAAAATTCATCTGTGTTCAACTTTGGAATATTTTACGACGCTCTGGAGTCTGGTGTGATGGAGACGACAGATTTTCCAAAGAAATTTTTATACTGCTTCTGGTGGGGTCTGCGCAGCCTTAGTTCTCTAGGTCAAAACCTCAAAACAAGCACTTTTGTTTGGGAGATACTCTTTGCAGTCTTCATTTCTATCTTCGGACTGGTGCTATTTTCATTGCTCATTGGAAATATGCAGAAATTTCTGCAGTCAACAACTGTGAGAGTTGAAGAAATGAGAGTGAAAAGGCGAGATGCAGAACAGTGGATGTCCCACCGAATGCTCCCGGAGAACCTGAAGGAAAGGATCAGACGCTATGATCAGTATAAATGGCAAGAAACAAGAGGTGTTGAGGAAGATACTCTAGTTCGTAACCTTCCTAAAGACTTGAGGAAGGACATAAAACGCCATCTTTGCTTGGCTCTTGTTAGGAGAGTGCCAATGTTCGAGAATATGGATGAGCGACTGATGGATGCCCTGTGTGATCATCTCAAGCCAGTTCTTTTCACAGACAACAGCTTCATCATCCGAGAGGGTGACCCAGTTGATGAGATGCTATTTGTTATGCGTGGAAACTTAGCAACTATGACTACTAATGCTTCTTACATGGGCATTGGATCCAAAATCCACTTCCAATCTTCCCATCTCAACTAG

Protein Analysis

564

Amino Acids

64.87

Weight (kDa)

9.08

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 97 - 421 4.4e-17 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1118
AciI CCGC 5 cut(s) 35, 460, 645, 710, 936
AclWI GGATC 5 cut(s) 61, 268, 1355, 1653, 1666
AcoI YGGCCR 2 cut(s) 525, 642
AcsI RAATTY 4 cut(s) 74, 1009, 1088, 1241
AcuI CTGAAG 3 cut(s) 254, 327, 1358
AfaI GTAC 1 cut(s) 827
AfiI CCNNNNNNNGG 1 cut(s) 376
AflIII ACRYGT 1 cut(s) 792
AgsI TTSAA 6 cut(s) 81, 187, 728, 778, 1024, 1271
AjnI CCWGG 2 cut(s) 110, 232
AjuI GAANNNNNNNTTGG 2 cut(s) 1655, 1687
AluBI AGCT 7 cut(s) 183, 311, 508, 575, 770, 974, 1560
AluI AGCT 7 cut(s) 183, 311, 508, 575, 770, 974, 1560
Alw26I GTCTC 1 cut(s) 1061
AlwI GGATC 5 cut(s) 61, 268, 1355, 1653, 1666
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 4 cut(s) 113, 229, 525, 642
ApeKI GCWGC 6 cut(s) 211, 388, 764, 767, 770, 1119
ApoI RAATTY 4 cut(s) 74, 1009, 1088, 1241
AspLEI GCGC 1 cut(s) 1119
AspS9I GGNCC 2 cut(s) 230, 322
AsuC2I CCSGG 1 cut(s) 1328
AsuHPI GGTGA 3 cut(s) 412, 515, 1589
AvaII GGWCC 1 cut(s) 322
AxyI CCTNAGG 2 cut(s) 255, 996
BaeI ACNNNNGTAYC 2 cut(s) 1392, 1425
BalI TGGCCA 1 cut(s) 527
BamHI GGATCC 1 cut(s) 1658
BarI GAAGNNNNNNTAC 2 cut(s) 539, 571
BbsI GAAGAC 1 cut(s) 1177
BbvI GCAGC 6 cut(s) 223, 375, 751, 757, 779, 1131
BccI CCATC 8 cut(s) 83, 124, 347, 487, 1057, 1458, 1504, 1692
BciT130I CCWGG 2 cut(s) 112, 234
BclI TGATCA 3 cut(s) 865, 1360, 1525
BcnI CCSGG 1 cut(s) 1328
BcoDI GTCTC 1 cut(s) 1061
BfaI CTAG 5 cut(s) 486, 572, 1133, 1406, 1693
BfmI CTRYAG 4 cut(s) 389, 597, 765, 1247
BisI GCNGC 7 cut(s) 212, 389, 645, 765, 768, 771, 1120
BlsI GCNGC 7 cut(s) 213, 390, 646, 766, 769, 772, 1121
Bme1390I CCNGG 3 cut(s) 112, 234, 1328
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 230, 322
BmiI GGNNCC 2 cut(s) 324, 1660
BmrFI CCNGG 3 cut(s) 112, 234, 1328
BmrI ACTGGG 2 cut(s) 474, 1577
BmsI GCATC 3 cut(s) 1285, 1504, 1584
BmuI ACTGGG 2 cut(s) 474, 1577
BpiI GAAGAC 1 cut(s) 1177
BpmI CTGGAG 1 cut(s) 1070
BpuEI CTTGAG 2 cut(s) 1450, 1517
BpuMI CCSGG 1 cut(s) 1328
BsaJI CCNNGG 4 cut(s) 110, 232, 233, 370
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 5 cut(s) 469, 632, 1209, 1538, 1583
Bse21I CCTNAGG 2 cut(s) 255, 996
Bse3DI GCAATG 3 cut(s) 396, 528, 1217
BseBI CCWGG 2 cut(s) 112, 234
BseDI CCNNGG 4 cut(s) 110, 232, 233, 370
BseGI GGATG 4 cut(s) 1314, 1504, 1519, 1566
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMI GCAATG 3 cut(s) 396, 528, 1217
BseMII CTCAG 3 cut(s) 57, 269, 987
BseNI ACTGG 5 cut(s) 469, 632, 1209, 1538, 1583
BseXI GCAGC 6 cut(s) 223, 375, 751, 757, 779, 1131
BshFI GGCC 4 cut(s) 115, 231, 527, 644
BsiSI CCGG 1 cut(s) 1328
BslFI GGGAC 4 cut(s) 28, 186, 599, 1297
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 1061
BsmBI CGTCTC 1 cut(s) 1061
BsmFI GGGAC 4 cut(s) 28, 186, 599, 1297
BsmI GAATGC 4 cut(s) 43, 130, 773, 1326
BsnI GGCC 4 cut(s) 115, 231, 527, 644
Bsp143I GATC 8 cut(s) 53, 260, 393, 865, 1347, 1360, 1525, 1658
BspACI CCGC 5 cut(s) 35, 460, 645, 710, 936
BspANI GGCC 4 cut(s) 115, 231, 527, 644
BspCNI CTCAG 3 cut(s) 58, 268, 988
BspLI GGNNCC 2 cut(s) 324, 1660
BspMAI CTGCAG 3 cut(s) 393, 769, 1251
BspPI GGATC 5 cut(s) 61, 268, 1355, 1653, 1666
BsrDI GCAATG 3 cut(s) 396, 528, 1217
BsrI ACTGG 5 cut(s) 469, 632, 1209, 1538, 1583
BssECI CCNNGG 4 cut(s) 110, 232, 233, 370
BssMI GATC 8 cut(s) 53, 260, 393, 865, 1347, 1360, 1525, 1658
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 2 cut(s) 112, 234
Bst4CI ACNGT 3 cut(s) 908, 1261, 1305
BstC8I GCNNGC 4 cut(s) 216, 403, 802, 860
BstDEI CTNAG 7 cut(s) 18, 66, 207, 255, 996, 1124, 1618
BstEII GGTNACC 1 cut(s) 1577
BstF5I GGATG 4 cut(s) 1314, 1504, 1519, 1566
BstHHI GCGC 1 cut(s) 1119
BstKTI GATC 8 cut(s) 56, 263, 396, 868, 1350, 1363, 1528, 1661
BstMAI GTCTC 1 cut(s) 1061
BstMBI GATC 8 cut(s) 53, 260, 393, 865, 1347, 1360, 1525, 1658
BstMWI GCNNNNNNNGC 3 cut(s) 764, 770, 1455
BstNI CCWGG 2 cut(s) 112, 234
BstNSI RCATGY 1 cut(s) 796
BstPI GGTNACC 1 cut(s) 1577
BstSCI CCNGG 3 cut(s) 110, 232, 1326
BstSFI CTRYAG 4 cut(s) 389, 597, 765, 1247
BstV1I GCAGC 6 cut(s) 223, 375, 751, 757, 779, 1131
BstV2I GAAGAC 1 cut(s) 1177
BstX2I RGATCY 2 cut(s) 53, 1658
BstXI CCANNNNNNTGG 1 cut(s) 812
BstYI RGATCY 2 cut(s) 53, 1658
Bsu36I CCTNAGG 2 cut(s) 255, 996
BsuRI GGCC 4 cut(s) 115, 231, 527, 644
BtsCI GGATG 4 cut(s) 1314, 1504, 1519, 1566
BtsIMutI CAGTG 3 cut(s) 351, 462, 1310
Cac8I GCNNGC 4 cut(s) 216, 403, 802, 860
CaiI CAGNNNCTG 1 cut(s) 233
CfoI GCGC 1 cut(s) 1119
Cfr13I GGNCC 2 cut(s) 230, 322
CseI GACGC 2 cut(s) 1052, 1362
Csp6I GTAC 1 cut(s) 826
CviAII CATG 2 cut(s) 793, 1648
CviQI GTAC 1 cut(s) 826
DdeI CTNAG 7 cut(s) 18, 66, 207, 255, 996, 1124, 1618
DpnI GATC 8 cut(s) 55, 262, 395, 867, 1349, 1362, 1527, 1660
DpnII GATC 8 cut(s) 53, 260, 393, 865, 1347, 1360, 1525, 1658
DraI TTTAAA 1 cut(s) 178
EaeI YGGCCR 2 cut(s) 525, 642
Eco130I CCWWGG 1 cut(s) 370
Eco32I GATATC 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 322
Eco57I CTGAAG 3 cut(s) 254, 327, 1358
Eco81I CCTNAGG 2 cut(s) 255, 996
Eco91I GGTNACC 1 cut(s) 1577
EcoO109I RGGNCCY 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 1577
EcoRII CCWGG 2 cut(s) 110, 232
EcoRV GATATC 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
Esp3I CGTCTC 1 cut(s) 1061
FaeI CATG 2 cut(s) 796, 1651
FaqI GGGAC 4 cut(s) 28, 186, 599, 1297
FatI CATG 2 cut(s) 792, 1647
FauI CCCGC 1 cut(s) 929
FbaI TGATCA 3 cut(s) 865, 1360, 1525
Fnu4HI GCNGC 7 cut(s) 212, 389, 645, 765, 768, 771, 1120
FokI GGATG 4 cut(s) 1321, 1511, 1526, 1553
Fsp4HI GCNGC 7 cut(s) 212, 389, 645, 765, 768, 771, 1120
FspBI CTAG 5 cut(s) 486, 572, 1133, 1406, 1693
FspI TGCGCA 1 cut(s) 1118
GlaI GCGC 1 cut(s) 1118
GluI GCNGC 7 cut(s) 212, 389, 645, 765, 768, 771, 1120
GsuI CTGGAG 1 cut(s) 1070
HaeIII GGCC 4 cut(s) 115, 231, 527, 644
HapII CCGG 1 cut(s) 1328
HgaI GACGC 2 cut(s) 1052, 1362
HhaI GCGC 1 cut(s) 1119
Hin1II CATG 2 cut(s) 796, 1651
Hin6I GCGC 1 cut(s) 1117
HinP1I GCGC 1 cut(s) 1117
HincII GTYRAC 2 cut(s) 961, 1254
HindII GTYRAC 2 cut(s) 961, 1254
HindIII AAGCTT 2 cut(s) 181, 972
HinfI GANTC 4 cut(s) 4, 224, 702, 1052
HpaI GTTAAC 1 cut(s) 961
HpaII CCGG 1 cut(s) 1328
HphI GGTGA 3 cut(s) 412, 515, 1589
Hpy166II GTNNAC 2 cut(s) 961, 1254
Hpy188I TCNGA 9 cut(s) 49, 67, 147, 169, 273, 497, 1202, 1352, 1571
Hpy188III TCNNGA 5 cut(s) 248, 486, 745, 1049, 1489
Hpy8I GTNNAC 2 cut(s) 961, 1254
Hpy99I CGWCG 1 cut(s) 1046
HpyAV CCTTC 5 cut(s) 378, 492, 1333, 1427, 1429
HpyCH4III ACNGT 3 cut(s) 908, 1261, 1305
HpyCH4IV ACGT 1 cut(s) 628
HpyCH4V TGCA 9 cut(s) 128, 391, 533, 767, 773, 1181, 1237, 1249, 1298
HpyF10VI GCNNNNNNNGC 3 cut(s) 764, 770, 1455
HpyF3I CTNAG 7 cut(s) 18, 66, 207, 255, 996, 1124, 1618
HpySE526I ACGT 1 cut(s) 628
Hsp92II CATG 2 cut(s) 796, 1651
HspAI GCGC 1 cut(s) 1117
Ksp22I TGATCA 3 cut(s) 865, 1360, 1525
KspAI GTTAAC 1 cut(s) 961
Kzo9I GATC 8 cut(s) 53, 260, 393, 865, 1347, 1360, 1525, 1658
LmnI GCTCC 2 cut(s) 815, 1329
Lsp1109I GCAGC 6 cut(s) 223, 375, 751, 757, 779, 1131
LweI GCATC 3 cut(s) 1285, 1504, 1584
MaeI CTAG 5 cut(s) 486, 572, 1133, 1406, 1693
MaeII ACGT 1 cut(s) 628
MaeIII GTNAC 2 cut(s) 1412, 1577
MalI GATC 8 cut(s) 55, 262, 395, 867, 1349, 1362, 1527, 1660
MboI GATC 8 cut(s) 53, 260, 393, 865, 1347, 1360, 1525, 1658
MfeI CAATTG 1 cut(s) 954
MflI RGATCY 2 cut(s) 53, 1658
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 5 cut(s) 74, 954, 1009, 1088, 1241
MluNI TGGCCA 1 cut(s) 527
MlyI GAGTC 2 cut(s) 233, 1061
MmeI TCCRAC 2 cut(s) 257, 793
Mox20I TGGCCA 1 cut(s) 527
MscI TGGCCA 1 cut(s) 527
MseI TTAA 5 cut(s) 177, 197, 960, 968, 1005
MslI CAYNNNNRTG 1 cut(s) 311
Msp20I TGGCCA 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 770
MspI CCGG 1 cut(s) 1328
MspR9I CCNGG 3 cut(s) 112, 234, 1328
MunI CAATTG 1 cut(s) 954
Mva1269I GAATGC 4 cut(s) 43, 130, 773, 1326
MvaI CCWGG 2 cut(s) 112, 234
MwoI GCNNNNNNNGC 3 cut(s) 764, 770, 1455
NciI CCSGG 1 cut(s) 1328
NdeII GATC 8 cut(s) 53, 260, 393, 865, 1347, 1360, 1525, 1658
NlaIII CATG 2 cut(s) 796, 1651
NlaIV GGNNCC 2 cut(s) 324, 1660
NmuCI GTSAC 1 cut(s) 1577
NsbI TGCGCA 1 cut(s) 1118
NspI RCATGY 1 cut(s) 796
PasI CCCWGGG 1 cut(s) 233
PciI ACATGT 1 cut(s) 792
PctI GAATGC 4 cut(s) 43, 130, 773, 1326
PfeI GAWTC 2 cut(s) 4, 702
PfoI TCCNGGA 1 cut(s) 1326
PkrI GCNGC 7 cut(s) 213, 390, 646, 766, 769, 772, 1121
PleI GAGTC 2 cut(s) 232, 1060
PpsI GAGTC 2 cut(s) 232, 1060
PscI ACATGT 1 cut(s) 792
Psp6I CCWGG 2 cut(s) 110, 232
PspEI GGTNACC 1 cut(s) 1577
PspGI CCWGG 2 cut(s) 110, 232
PspN4I GGNNCC 2 cut(s) 324, 1660
PspPI GGNCC 2 cut(s) 230, 322
PstI CTGCAG 3 cut(s) 393, 769, 1251
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 2 cut(s) 53, 1658
PvuII CAGCTG 1 cut(s) 770
RsaI GTAC 1 cut(s) 827
RsaNI GTAC 1 cut(s) 826
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 5 cut(s) 177, 197, 960, 968, 1005
SatI GCNGC 7 cut(s) 212, 389, 645, 765, 768, 771, 1120
Sau3AI GATC 8 cut(s) 53, 260, 393, 865, 1347, 1360, 1525, 1658
Sau96I GGNCC 2 cut(s) 230, 322
SchI GAGTC 2 cut(s) 233, 1061
ScrFI CCNGG 3 cut(s) 112, 234, 1328
SfaNI GCATC 3 cut(s) 1285, 1504, 1584
SfcI CTRYAG 4 cut(s) 389, 597, 765, 1247
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 1429, 1532
SmoI CTYRAG 2 cut(s) 1429, 1532
Sse9I AATT 5 cut(s) 74, 954, 1009, 1088, 1241
SsiI CCGC 5 cut(s) 35, 460, 645, 710, 936
SspI AATATT 1 cut(s) 1035
SspMI CTAG 5 cut(s) 486, 572, 1133, 1406, 1693
StyD4I CCNGG 3 cut(s) 110, 232, 1326
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 3 cut(s) 908, 1261, 1305
TaiI ACGT 1 cut(s) 631
TaqI TCGA 4 cut(s) 156, 249, 918, 1488
TasI AATT 5 cut(s) 74, 954, 1009, 1088, 1241
TauI GCSGC 1 cut(s) 647
TfiI GAWTC 2 cut(s) 4, 702
Tru1I TTAA 5 cut(s) 177, 197, 960, 968, 1005
Tru9I TTAA 5 cut(s) 177, 197, 960, 968, 1005
TscAI CASTG 3 cut(s) 351, 469, 1310
TseFI GTSAC 1 cut(s) 1577
TseI GCWGC 6 cut(s) 211, 388, 764, 767, 770, 1119
Tsp45I GTSAC 1 cut(s) 1577
TspDTI ATGAA 9 cut(s) 17, 405, 431, 540, 547, 1002, 1177, 1206, 1552
TspGWI ACGGA 1 cut(s) 826
TspRI CASTG 3 cut(s) 351, 469, 1310
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 4 cut(s) 74, 1009, 1088, 1241
XbaI TCTAGA 1 cut(s) 485
XceI RCATGY 1 cut(s) 796
XspI CTAG 5 cut(s) 486, 572, 1133, 1406, 1693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.