Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004897

Physical Location & Seq

Genomic Coordinates Forward (+)

16807002 .. 16808165

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGATGGACGAAATCCAAGAAGACGGACTGGAGAGAGGTTCTGACAGGTTTAGAAGCTTGAAAAAACCATCAAGTTCCACTTCTGTAGGTAACGGGCTAACAAATGAGTCAGGCTCCAGGAGGAAAATTCTTCACCCTCAGGGGCCATTCCTTCAGAATTGGAATAGGATATTTGTGCTCTCTTGTGTCATAGCTGTGTCCTTGGACCCGCTGTTTTTTTATTCCGCGGTGGTTGATGGCAAAAAGAAATGCCTCAATTTACACAAGACATTGCAGATCACTGTTTGTGTTCTTCGATCATGTACCGACATGTTTCATGTATTTCACATCATCCTTCAGTTCCGCACGGGGTTTATTGCCCCGTCTTCTCGCGTATTTGGGAGGGGTGAGCTAATTGATGATCCCGTGGCCATTGCGAAAAGATACTTGTCCTCATACTTCATCGTTGACATTCTAGCCATTCTTCCCCTGCCACAGGTTGTAGTTTTTGTTATAATCCCTACAATCTCGGGTCCGGTTCCACTGGTTGCAAAGGATTTGTTGAAGTTTATAATCGTTGCGCAATATGTGCCAAGATTTTGGAGGATCTATCCACTCTGCCAAGAAGTAACAAGAACTTCTGGTTTCATGACCGAAACAGCATGGGCCGGGGCTGCTGTCAATCTTCTGCTCTTCATGCTAGCCGGTCACTTGGAGCCTTTTGGTACTTGCTCTCCGTGGAACGCGAGTACACGTGCTGGTGCGATCAGTGCAATGGGAACGTTGATTGTAAGAAATTCCTGTACTGTGTTCCTAAGGGTGGCACTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

271

Amino Acids

30.0

Weight (kDa)

9.39

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01340 AT1G01340 AT2G46430 AT2G46430 AT4G01010 AT4G01010
fragaria_vesca	FvH4_7g16300 FvH4_7g16300
malus_domestica	MD01G1079600.v1.1 MD07G1148400.v1.1
prunus_persica	Prupe.2G186700_v2.0.a1 Prupe.2G186700_v2.0.a1 Prupe.2G186700_v2.0.a1 Prupe.2G186900_v2.0.a1 Prupe.2G186900_v2.0.a1 Prupe.2G186900_v2.0.a1
pyrus_communis	pycom01g10790 pycom07g14740
rosa_chinensis	RchiOBHm_Chr1g0359311
rosa_laevigata	RLG00000027881
rosa_multiflora	Rmu_sc0005090.1_g000001 Rmu_sc0017222.1_g000004
rosa_roxburghii	Rroxscaffold_4G00297110
rosa_rugosa	Rorug01G0269500 Rorug01G0269600
rosa_samantha	Rh1AG283400 Rh1BG249600 Rh1CG267500 Rh1DG278500
rosa_wichuraiana	Rw1G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	494, 551
Acc16I	TGCGCA	1 cut(s)	561
AccII	CGCG	3 cut(s)	227, 372, 725
AciI	CCGC	4 cut(s)	209, 225, 227, 343
AclI	AACGTT	1 cut(s)	761
AclWI	GGATC	2 cut(s)	395, 593
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	2 cut(s)	126, 775
AcuI	CTGAAG	2 cut(s)	137, 320
AcvI	CACGTG	1 cut(s)	734
AfaI	GTAC	4 cut(s)	304, 706, 730, 784
AfiI	CCNNNNNNNGG	2 cut(s)	475, 799
AflIII	ACRYGT	2 cut(s)	309, 731
AgsI	TTSAA	2 cut(s)	61, 544
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	3 cut(s)	57, 194, 391
AluI	AGCT	3 cut(s)	57, 194, 391
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	395, 593
Ama87I	CYCGRG	1 cut(s)	508
AoxI	GGCC	3 cut(s)	143, 408, 645
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	2 cut(s)	126, 775
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	4 cut(s)	143, 205, 512, 645
AsuC2I	CCSGG	1 cut(s)	649
AsuHPI	GGTGA	2 cut(s)	125, 398
AsuNHI	GCTAGC	1 cut(s)	679
AvaI	CYCGRG	1 cut(s)	508
AvaII	GGWCC	2 cut(s)	205, 512
AxyI	CCTNAGG	2 cut(s)	138, 794
BalI	TGGCCA	1 cut(s)	410
BbrPI	CACGTG	1 cut(s)	734
BbsI	GAAGAC	2 cut(s)	27, 357
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	2 cut(s)	76, 230
BciT130I	CCWGG	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	649
BfaI	CTAG	2 cut(s)	455, 680
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	654
BlsI	GCNGC	1 cut(s)	655
Bme1390I	CCNGG	2 cut(s)	118, 649
Bme18I	GGWCC	2 cut(s)	205, 512
BmeT110I	CYCGRG	1 cut(s)	508
BmgT120I	GGNCC	4 cut(s)	143, 205, 512, 645
BmiI	GGNNCC	6 cut(s)	115, 144, 207, 513, 519, 696
BmrFI	CCNGG	2 cut(s)	118, 649
BmtI	GCTAGC	1 cut(s)	683
BpiI	GAAGAC	2 cut(s)	27, 357
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpmI	CTGGAG	2 cut(s)	50, 100
BpuMI	CCSGG	1 cut(s)	649
BsaAI	YACGTR	1 cut(s)	734
BsaJI	CCNNGG	5 cut(s)	201, 225, 405, 648, 716
BsaWI	WCCGGW	1 cut(s)	514
BsaXI	ACNNNNNCTCC	2 cut(s)	697, 727
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 799
Bse118I	RCCGGY	1 cut(s)	683
Bse1I	ACTGG	2 cut(s)	33, 528
Bse21I	CCTNAGG	2 cut(s)	138, 794
Bse3DI	GCAATG	3 cut(s)	269, 411, 759
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	5 cut(s)	201, 225, 405, 648, 716
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	475, 799
BseMI	GCAATG	3 cut(s)	269, 411, 759
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	2 cut(s)	33, 528
BseXI	GCAGC	1 cut(s)	640
Bsh1236I	CGCG	3 cut(s)	227, 372, 725
BshFI	GGCC	3 cut(s)	145, 410, 647
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	3 cut(s)	515, 648, 684
BslI	CCNNNNNNNGG	2 cut(s)	475, 799
BsnI	GGCC	3 cut(s)	145, 410, 647
BsoBI	CYCGRG	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	5 cut(s)	276, 296, 400, 585, 744
BspACI	CCGC	4 cut(s)	209, 225, 227, 343
BspANI	GGCC	3 cut(s)	145, 410, 647
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	3 cut(s)	227, 372, 725
BspHI	TCATGA	1 cut(s)	627
BspLI	GGNNCC	6 cut(s)	115, 144, 207, 513, 519, 696
BspOI	GCTAGC	1 cut(s)	683
BspPI	GGATC	2 cut(s)	395, 593
BspQI	GCTCTTC	1 cut(s)	677
BsrDI	GCAATG	3 cut(s)	269, 411, 759
BsrFI	RCCGGY	1 cut(s)	683
BsrI	ACTGG	2 cut(s)	33, 528
BssAI	RCCGGY	1 cut(s)	683
BssECI	CCNNGG	5 cut(s)	201, 225, 405, 648, 716
BssMI	GATC	5 cut(s)	276, 296, 400, 585, 744
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	283, 787
Bst6I	CTCTTC	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstBAI	YACGTR	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	681
BstDEI	CTNAG	2 cut(s)	138, 794
BstDSI	CCRYGG	3 cut(s)	225, 405, 716
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	3 cut(s)	227, 372, 725
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	5 cut(s)	279, 299, 403, 588, 747
BstMBI	GATC	5 cut(s)	276, 296, 400, 585, 744
BstMWI	GCNNNNNNNGC	4 cut(s)	568, 653, 676, 749
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	2 cut(s)	116, 647
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	3 cut(s)	227, 372, 725
BstV1I	GCAGC	1 cut(s)	640
BstV2I	GAAGAC	2 cut(s)	27, 357
BstX2I	RGATCY	1 cut(s)	585
BstXI	CCANNNNNNTGG	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	585
Bsu36I	CCTNAGG	2 cut(s)	138, 794
BsuRI	GGCC	3 cut(s)	145, 410, 647
BtgI	CCRYGG	3 cut(s)	225, 405, 716
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	4 cut(s)	279, 521, 754, 803
Cac8I	GCNNGC	1 cut(s)	681
CciI	TCATGA	1 cut(s)	627
CfoI	GCGC	1 cut(s)	562
Cfr10I	RCCGGY	1 cut(s)	683
Cfr13I	GGNCC	4 cut(s)	143, 205, 512, 645
Cfr42I	CCGCGG	1 cut(s)	228
Csp6I	GTAC	4 cut(s)	303, 705, 729, 783
CviAII	CATG	6 cut(s)	300, 310, 317, 628, 642, 676
CviQI	GTAC	4 cut(s)	303, 705, 729, 783
DdeI	CTNAG	2 cut(s)	138, 794
DpnI	GATC	5 cut(s)	278, 298, 402, 587, 746
DpnII	GATC	5 cut(s)	276, 296, 400, 585, 744
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco130I	CCWWGG	1 cut(s)	201
Eco47I	GGWCC	2 cut(s)	205, 512
Eco57I	CTGAAG	2 cut(s)	137, 320
Eco72I	CACGTG	1 cut(s)	734
Eco81I	CCTNAGG	2 cut(s)	138, 794
Eco88I	CYCGRG	1 cut(s)	508
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	6 cut(s)	303, 313, 320, 631, 645, 679
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FatI	CATG	6 cut(s)	299, 309, 316, 627, 641, 675
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	654
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	654
FspBI	CTAG	2 cut(s)	455, 680
FspI	TGCGCA	1 cut(s)	561
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	1 cut(s)	654
GsuI	CTGGAG	2 cut(s)	50, 100
HaeIII	GGCC	3 cut(s)	145, 410, 647
HapII	CCGG	3 cut(s)	515, 648, 684
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	6 cut(s)	303, 313, 320, 631, 645, 679
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	3 cut(s)	515, 648, 684
HphI	GGTGA	2 cut(s)	125, 398
Hpy166II	GTNNAC	2 cut(s)	448, 731
Hpy188I	TCNGA	2 cut(s)	43, 156
Hpy188III	TCNNGA	1 cut(s)	628
Hpy8I	GTNNAC	2 cut(s)	448, 731
HpyAV	CCTTC	2 cut(s)	161, 344
HpyCH4III	ACNGT	2 cut(s)	283, 787
HpyCH4IV	ACGT	2 cut(s)	733, 761
HpyCH4V	TGCA	3 cut(s)	274, 530, 752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	568, 653, 676, 749
HpyF3I	CTNAG	2 cut(s)	138, 794
HpySE526I	ACGT	2 cut(s)	733, 761
Hsp92II	CATG	6 cut(s)	303, 313, 320, 631, 645, 679
HspAI	GCGC	1 cut(s)	560
KspI	CCGCGG	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	276, 296, 400, 585, 744
LguI	GCTCTTC	1 cut(s)	677
LmnI	GCTCC	2 cut(s)	119, 694
Lsp1109I	GCAGC	1 cut(s)	640
MaeI	CTAG	2 cut(s)	455, 680
MaeII	ACGT	2 cut(s)	733, 761
MaeIII	GTNAC	3 cut(s)	89, 607, 686
MalI	GATC	5 cut(s)	278, 298, 402, 587, 746
MboI	GATC	5 cut(s)	276, 296, 400, 585, 744
MboII	GAAGA	7 cut(s)	32, 122, 284, 357, 455, 656, 664
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	5 cut(s)	126, 157, 256, 393, 775
MluNI	TGGCCA	1 cut(s)	410
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	7 cut(s)	29, 114, 147, 263, 375, 442, 576
Mox20I	TGGCCA	1 cut(s)	410
MscI	TGGCCA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	211, 227
MspI	CCGG	3 cut(s)	515, 648, 684
MspR9I	CCNGG	2 cut(s)	118, 649
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	3 cut(s)	227, 372, 725
MwoI	GCNNNNNNNGC	4 cut(s)	568, 653, 676, 749
NciI	CCSGG	1 cut(s)	649
NdeII	GATC	5 cut(s)	276, 296, 400, 585, 744
NheI	GCTAGC	1 cut(s)	679
NlaIII	CATG	6 cut(s)	303, 313, 320, 631, 645, 679
NlaIV	GGNNCC	6 cut(s)	115, 144, 207, 513, 519, 696
NmuCI	GTSAC	1 cut(s)	686
NsbI	TGCGCA	1 cut(s)	561
NspI	RCATGY	1 cut(s)	313
PagI	TCATGA	1 cut(s)	627
PciI	ACATGT	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	677
PfoI	TCCNGGA	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	655
PleI	GAGTC	1 cut(s)	115
PmaCI	CACGTG	1 cut(s)	734
PmlI	CACGTG	1 cut(s)	734
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	734
PscI	ACATGT	1 cut(s)	309
PsiI	TTATAA	2 cut(s)	494, 551
Psp1406I	AACGTT	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	116
PspCI	CACGTG	1 cut(s)	734
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	6 cut(s)	115, 144, 207, 513, 519, 696
PspPI	GGNCC	4 cut(s)	143, 205, 512, 645
PsuI	RGATCY	1 cut(s)	585
RsaI	GTAC	4 cut(s)	304, 706, 730, 784
RsaNI	GTAC	4 cut(s)	303, 705, 729, 783
RseI	CAYNNNNRTG	1 cut(s)	194
SacII	CCGCGG	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	677
SatI	GCNGC	1 cut(s)	654
Sau3AI	GATC	5 cut(s)	276, 296, 400, 585, 744
Sau96I	GGNCC	4 cut(s)	143, 205, 512, 645
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	118, 649
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	9 cut(s)	40, 50, 59, 91, 196, 393, 480, 736, 764
SfcI	CTRYAG	1 cut(s)	84
Sfr303I	CCGCGG	1 cut(s)	228
SgrBI	CCGCGG	1 cut(s)	228
SinI	GGWCC	2 cut(s)	205, 512
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	126, 157, 256, 393, 775
SsiI	CCGC	4 cut(s)	209, 225, 227, 343
SspMI	CTAG	2 cut(s)	455, 680
StyD4I	CCNGG	2 cut(s)	116, 647
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	283, 787
TaiI	ACGT	2 cut(s)	736, 764
TaqI	TCGA	1 cut(s)	295
TaqII	GACCGA	1 cut(s)	647
TasI	AATT	5 cut(s)	126, 157, 256, 393, 775
TatI	WGTACW	2 cut(s)	728, 782
TscAI	CASTG	4 cut(s)	286, 528, 754, 810
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	4 cut(s)	305, 430, 616, 664
TspGWI	ACGGA	2 cut(s)	39, 705
TspRI	CASTG	4 cut(s)	286, 528, 754, 810
VpaK11BI	GGWCC	2 cut(s)	205, 512
XagI	CCTNNNNNAGG	1 cut(s)	473
XapI	RAATTY	2 cut(s)	126, 775
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	2 cut(s)	455, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.