Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008453

Physical Location & Seq

Genomic Coordinates Forward (+)

19272281 .. 19274002

Gene Structure 1722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGATCGAATTGCGTCTGCGACTTTCTCTTGCCCTGCGATTTCATTGTCCCGCGTCTGTAGAATCAGCCCTTTTGGCTTAAACATTAAAACCAACCATAGAAAGAGATTCTCGTGTCGAGTAGCTGTAGCTTCTGGAGAGACTTCGGCCAGGGTCGTCGTCGACAATGAACTTGACTTAGAACACAAGAAACACGATCTACTGAGAGCTGTTCAAGACACTCAACGAGGACTCACTGCCACTTCTGATCAACGATCTATCATTGAGGAGGCTCTGGTGACTGTGGAAGGGTTTAATGGCGGTGAAGAAATTGATCCAGTGAAGTTAGATGGAACATGGAGGCTACAATATACATCTGCACCTGATGTTGTTGTTCTGTTTGAAGCTGCTTCAAGACTTCCCTTCTTTCAGGTAGGGCAGGTCTTTCAGAAGTTTGAGTGCAGAGATAGATCCGACGGTGGGATCATTCGGAATGTTGTTCAGTGGAGTCTTCCAAGCTTGTTGGAGGAGCAAGAAGGTGCAACACTTGTTGTTACCGCGAAATTTGATAAGGTCTCTAGTCGAAACATCTACCTTCAGTTTGAAGAGATAAGTGTTAGAAACATTAACATCAATGAGCAGCTTCAAGCTCTTATCGCACCTGCAATACTTCCACGCTCATTTCTAAGCCTACAGCTTTTGCAGTTTATCCGTACTTTCAAAGCTCAGATTCCAGTAAACGCAACCAGCCCAGGAAGGAGATCTGTAGGTGGATTGTATTACCTATCGTATCTCGATAACAACATGCTTTTGGGACGGTCTGTAGGAGGAGGAGGAGTATTTGTCTTTACAAAATCTCAACCCCTCGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

284

Amino Acids

31.58

Weight (kDa)

8.35

Isoelectric Point (pI)

59.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	63 - 276	5.8e-24	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46910
fragaria_vesca	FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990
malus_domestica	MD17G1162500.v1.1
prunus_persica	Prupe.3G022800_v2.0.a1 Prupe.3G022800_v2.0.a1 Prupe.3G022800_v2.0.a1
pyrus_communis	pycom17g15560
rosa_chinensis	RchiOBHm_Chr2g0149531
rosa_laevigata	RLG00000020417
rosa_multiflora	Rmu_sc0006867.1_g000012 Rmu_sc0008619.1_g000008
rosa_roxburghii	Rroxscaffold_2G00098040
rosa_rugosa	Rorug02G0412100
rosa_samantha	Rh2AG472500 Rh2BG484500 Rh2CG458400 Rh2DG493700
rosa_wichuraiana	Rw2G038510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	649
Acc36I	ACCTGC	2 cut(s)	409, 649
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	2 cut(s)	54, 539
AciI	CCGC	3 cut(s)	52, 300, 537
AclWI	GGATC	4 cut(s)	12, 308, 444, 470
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	542
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	1 cut(s)	694
AfiI	CCNNNNNNNGG	1 cut(s)	459
AgsI	TTSAA	6 cut(s)	215, 383, 393, 584, 626, 700
AjnI	CCWGG	2 cut(s)	149, 730
Alw26I	GTCTC	2 cut(s)	134, 559
AlwI	GGATC	4 cut(s)	12, 308, 444, 470
Ama87I	CYCGRG	1 cut(s)	845
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	386, 619
ApoI	RAATTY	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	289, 314
AvaI	CYCGRG	1 cut(s)	845
BauI	CACGAG	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	482
BbvI	GCAGC	2 cut(s)	373, 631
BccI	CCATC	1 cut(s)	323
BciT130I	CCWGG	2 cut(s)	151, 732
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	2 cut(s)	134, 559
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	5 cut(s)	58, 126, 671, 744, 801
BfuAI	ACCTGC	2 cut(s)	409, 649
BglI	GCCNNNNNGGC	1 cut(s)	75
BglII	AGATCT	1 cut(s)	740
BisI	GCNGC	2 cut(s)	387, 620
BlsI	GCNGC	2 cut(s)	388, 621
Bme1390I	CCNGG	2 cut(s)	151, 732
BmeT110I	CYCGRG	1 cut(s)	845
BmrFI	CCNGG	2 cut(s)	151, 732
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	559
BsaJI	CCNNGG	2 cut(s)	150, 730
BsaXI	ACNNNNNCTCC	4 cut(s)	801, 807, 831, 837
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	2 cut(s)	317, 713
BseBI	CCWGG	2 cut(s)	151, 732
BseDI	CCNNGG	2 cut(s)	150, 730
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	194, 719
BseNI	ACTGG	2 cut(s)	317, 713
BseRI	GAGGAG	5 cut(s)	281, 521, 822, 825, 828
BseXI	GCAGC	2 cut(s)	373, 631
BsgI	GTGCAG	2 cut(s)	342, 460
Bsh1236I	CGCG	2 cut(s)	54, 539
BshFI	GGCC	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	845
BslFI	GGGAC	2 cut(s)	34, 807
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	2 cut(s)	134, 559
BsmFI	GGGAC	2 cut(s)	34, 807
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	559
BsoBI	CYCGRG	1 cut(s)	845
Bsp143I	GATC	8 cut(s)	4, 196, 247, 254, 313, 449, 462, 740
BspACI	CCGC	3 cut(s)	52, 300, 537
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	195, 718
BspFNI	CGCG	2 cut(s)	54, 539
BspMI	ACCTGC	2 cut(s)	409, 649
BspPI	GGATC	4 cut(s)	12, 308, 444, 470
BspTNI	GGTCTC	1 cut(s)	559
BsrI	ACTGG	2 cut(s)	317, 713
BssECI	CCNNGG	2 cut(s)	150, 730
BssMI	GATC	8 cut(s)	4, 196, 247, 254, 313, 449, 462, 740
BssSI	CACGAG	1 cut(s)	112
Bst2BI	CACGAG	1 cut(s)	112
Bst2UI	CCWGG	2 cut(s)	151, 732
Bst4CI	ACNGT	3 cut(s)	283, 458, 798
Bst6I	CTCTTC	1 cut(s)	579
BstDEI	CTNAG	4 cut(s)	178, 203, 665, 705
BstFNI	CGCG	2 cut(s)	54, 539
BstKTI	GATC	8 cut(s)	7, 199, 250, 257, 316, 452, 465, 743
BstMAI	GTCTC	2 cut(s)	134, 559
BstMBI	GATC	8 cut(s)	4, 196, 247, 254, 313, 449, 462, 740
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 635
BstNI	CCWGG	2 cut(s)	151, 732
BstNSI	RCATGY	1 cut(s)	787
BstSCI	CCNGG	2 cut(s)	149, 730
BstSFI	CTRYAG	5 cut(s)	58, 126, 671, 744, 801
BstUI	CGCG	2 cut(s)	54, 539
BstV1I	GCAGC	2 cut(s)	373, 631
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	2 cut(s)	449, 740
BstYI	RGATCY	2 cut(s)	449, 740
BsuRI	GGCC	1 cut(s)	149
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	3 cut(s)	234, 324, 488
BveI	ACCTGC	2 cut(s)	409, 649
CseI	GACGC	2 cut(s)	3, 43
Csp6I	GTAC	1 cut(s)	693
CviAII	CATG	2 cut(s)	336, 784
CviQI	GTAC	1 cut(s)	693
DdeI	CTNAG	4 cut(s)	178, 203, 665, 705
DpnI	GATC	8 cut(s)	6, 198, 249, 256, 315, 451, 464, 742
DpnII	GATC	8 cut(s)	4, 196, 247, 254, 313, 449, 462, 740
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Eco31I	GGTCTC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	845
EcoRII	CCWGG	2 cut(s)	149, 730
FaeI	CATG	2 cut(s)	339, 787
FaiI	YATR	4 cut(s)	99, 337, 351, 785
FaqI	GGGAC	2 cut(s)	34, 807
FatI	CATG	2 cut(s)	335, 783
FauI	CCCGC	1 cut(s)	59
FbaI	TGATCA	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	387, 620
Fsp4HI	GCNGC	2 cut(s)	387, 620
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	2 cut(s)	387, 620
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	149
HgaI	GACGC	2 cut(s)	3, 43
Hin1II	CATG	2 cut(s)	339, 787
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	496
HinfI	GANTC	5 cut(s)	63, 108, 231, 487, 709
HphI	GGTGA	2 cut(s)	289, 314
Hpy166II	GTNNAC	2 cut(s)	163, 718
Hpy188I	TCNGA	5 cut(s)	247, 429, 454, 471, 708
Hpy188III	TCNNGA	4 cut(s)	135, 215, 393, 773
Hpy8I	GTNNAC	2 cut(s)	163, 718
Hpy99I	CGWCG	3 cut(s)	161, 164, 458
HpyAV	CCTTC	5 cut(s)	281, 412, 509, 584, 729
HpyCH4III	ACNGT	3 cut(s)	283, 458, 798
HpyCH4V	TGCA	5 cut(s)	359, 441, 521, 644, 682
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 635
HpyF3I	CTNAG	4 cut(s)	178, 203, 665, 705
Hsp92II	CATG	2 cut(s)	339, 787
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	8 cut(s)	4, 196, 247, 254, 313, 449, 462, 740
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	2 cut(s)	373, 631
MaeI	CTAG	1 cut(s)	558
MaeIII	GTNAC	2 cut(s)	277, 532
MalI	GATC	8 cut(s)	6, 198, 249, 256, 315, 451, 464, 742
MboI	GATC	8 cut(s)	4, 196, 247, 254, 313, 449, 462, 740
MboII	GAAGA	3 cut(s)	317, 482, 596
MflI	RGATCY	2 cut(s)	449, 740
MluCI	AATT	3 cut(s)	9, 309, 542
MlyI	GAGTC	2 cut(s)	225, 496
MmeI	TCCRAC	2 cut(s)	477, 483
MnlI	CCTC	9 cut(s)	221, 259, 262, 333, 499, 800, 803, 806, 854
MseI	TTAA	4 cut(s)	80, 87, 294, 606
MspR9I	CCNGG	2 cut(s)	151, 732
MvaI	CCWGG	2 cut(s)	151, 732
MvnI	CGCG	2 cut(s)	54, 539
MwoI	GCNNNNNNNGC	2 cut(s)	75, 635
NdeII	GATC	8 cut(s)	4, 196, 247, 254, 313, 449, 462, 740
NlaIII	CATG	2 cut(s)	339, 787
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	787
PaeR7I	CTCGAG	1 cut(s)	845
PaqCI	CACCTGC	1 cut(s)	649
PfeI	GAWTC	3 cut(s)	63, 108, 709
PkrI	GCNGC	2 cut(s)	388, 621
PleI	GAGTC	2 cut(s)	225, 495
PpsI	GAGTC	2 cut(s)	225, 495
Psp6I	CCWGG	2 cut(s)	149, 730
PspGI	CCWGG	2 cut(s)	149, 730
PspXI	VCTCGAGB	1 cut(s)	845
PsuI	RGATCY	2 cut(s)	449, 740
RsaI	GTAC	1 cut(s)	694
RsaNI	GTAC	1 cut(s)	693
SalI	GTCGAC	1 cut(s)	161
SaqAI	TTAA	4 cut(s)	80, 87, 294, 606
SatI	GCNGC	2 cut(s)	387, 620
Sau3AI	GATC	8 cut(s)	4, 196, 247, 254, 313, 449, 462, 740
SchI	GAGTC	2 cut(s)	225, 496
ScrFI	CCNGG	2 cut(s)	151, 732
SfcI	CTRYAG	5 cut(s)	58, 126, 671, 744, 801
Sfr274I	CTCGAG	1 cut(s)	845
SlaI	CTCGAG	1 cut(s)	845
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	3 cut(s)	9, 309, 542
SsiI	CCGC	3 cut(s)	52, 300, 537
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	2 cut(s)	149, 730
TaaI	ACNGT	3 cut(s)	283, 458, 798
TaqI	TCGA	6 cut(s)	7, 118, 162, 562, 774, 846
TasI	AATT	3 cut(s)	9, 309, 542
TfiI	GAWTC	3 cut(s)	63, 108, 709
Tru1I	TTAA	4 cut(s)	80, 87, 294, 606
Tru9I	TTAA	4 cut(s)	80, 87, 294, 606
TscAI	CASTG	3 cut(s)	241, 324, 488
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	386, 619
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	33, 183
TspGWI	ACGGA	1 cut(s)	680
TspRI	CASTG	3 cut(s)	241, 324, 488
XapI	RAATTY	1 cut(s)	542
XceI	RCATGY	1 cut(s)	787
XhoI	CTCGAG	1 cut(s)	845
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.