Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008453

Physical Location & Seq

Genomic Coordinates Forward (+)

1688204 .. 1692358

Gene Structure 4155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G022800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCAACATTATAGGCCCAGTACCTTTAAAAGTGGAGCCCAACTTCCCAATTACCAGGAGCAATACAAAGTTTTACTGCTCCTCAAAAAGTATGAAGTGGAAAGGGGAGGGGGGGATAGAATAGATGGGCAGTTTGGTAGTTGGGCTTGGGTACCTCCTTTTAAGTTGCATTGGCAGAGAAGAGAGCCTGAGACAGACACACAGTCCACAGACAGAGAACTCTTACCAGGTCATAAACCAAATTTGCATCAATCTCTTATGGACCTGGCTCTTTCTTCTCCATTGTTCCCTTCAAGTGCAACAAGAGGTGTAAATAAGATTAAGCCTTACAGCTCAATGCTTATTGCCACCCAAAAGGTGTCCACTCAGAAATTCTTTCCGTGTTTGGCAGCTGTTGCTACCCAGACAGCCCAGGCAGTGGAGGTTGCGGTAGAGAGCAAAAAACATGAGCTGTTGAGAGCTATCCAAGACACCCAAAGGGGCCTTGTCACGACTGACAATCAACGCTCTTCTATAGAGGAGGCTCTGGTGAGTGTGGAGGGTTATAACAAGGGTGCACCGTTAGACTTGGTGAAATTGGATGGGACATGGCGTTTGCAATATACTTCTGCTTCTGATGTTCTCATTCTTCTGGAAGCTGCTGCAAGGGTACCCTTTTTTCAGGTTGGGCAGATTTTTCAGAAATTTGAATGCAAAGACCAGTCCAGCGGGGGAGTAGTCCGTAATGTTGTCAGATGGAGTGTTCCGCCATTGTTAGAGGAACAAGAAGGTGCCACTCTGCTAGTTTCTGCAAAATTTTCAGTTGTTTCTGTGCGTAACATCTACCTTCAGTTTGAAGAGATTAATGTTCAAAATATCAAAATTAGTGAAGAGCTGCAGGCTCTAATAGCTCCAGCAATATTGCCACGATCATTTTTAAGTTTACAGATCTTGCAGTACCTCCGTAATTTCAAAGCTCAAATTCCGGTTAGAGACCCAGGACGGCAATCAGTAGGAGGACTATATTACCTTTCTTACTTGGATGCTAATATGCTTCTGGGGCGTGCTGTTGGTGGTGGAGGAGTTTTTGTTTTCACCAAAGCTCAACCTCTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

366

Amino Acids

40.78

Weight (kDa)

9.13

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46910
fragaria_vesca	FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990
malus_domestica	MD17G1162500.v1.1
prunus_persica	Prupe.3G022800_v2.0.a1 Prupe.3G022800_v2.0.a1 Prupe.3G022800_v2.0.a1
pyrus_communis	pycom17g15560
rosa_chinensis	RchiOBHm_Chr2g0149531
rosa_laevigata	RLG00000020417
rosa_multiflora	Rmu_sc0006867.1_g000012 Rmu_sc0008619.1_g000008
rosa_roxburghii	Rroxscaffold_2G00098040
rosa_rugosa	Rorug02G0412100
rosa_samantha	Rh2AG472500 Rh2BG484500 Rh2CG458400 Rh2DG493700
rosa_wichuraiana	Rw2G038510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
Acc65I	GGTACC	2 cut(s)	151, 649
AccB1I	GGYRCC	3 cut(s)	151, 649, 770
AccB7I	CCANNNNNTGG	1 cut(s)	418
AciI	CCGC	3 cut(s)	428, 708, 746
AcsI	RAATTY	5 cut(s)	241, 371, 683, 794, 960
AcuI	CTGAAG	1 cut(s)	812
AfaI	GTAC	4 cut(s)	22, 153, 651, 938
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	5 cut(s)	294, 689, 836, 851, 952
AhdI	GACNNNNNGTC	1 cut(s)	202
AjnI	CCWGG	5 cut(s)	54, 226, 264, 411, 976
AluBI	AGCT	9 cut(s)	333, 392, 451, 461, 638, 874, 890, 956, 1082
AluI	AGCT	9 cut(s)	333, 392, 451, 461, 638, 874, 890, 956, 1082
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	2 cut(s)	185, 966
Alw44I	GTGCAC	1 cut(s)	555
AoxI	GGCC	2 cut(s)	14, 481
ApaLI	GTGCAC	1 cut(s)	555
ApeKI	GCWGC	4 cut(s)	389, 638, 641, 874
ApoI	RAATTY	5 cut(s)	241, 371, 683, 794, 960
ArsI	GACNNNNNNTTYG	2 cut(s)	577, 609
AseI	ATTAAT	1 cut(s)	843
Asp718I	GGTACC	2 cut(s)	151, 649
AspS9I	GGNCC	3 cut(s)	15, 262, 481
AsuHPI	GGTGA	3 cut(s)	541, 583, 1066
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	559
BanI	GGYRCC	3 cut(s)	151, 649, 770
BanII	GRGCYC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	4 cut(s)	401, 625, 628, 861
BccI	CCATC	3 cut(s)	119, 575, 729
BceAI	ACGGC	1 cut(s)	998
BciT130I	CCWGG	5 cut(s)	56, 228, 266, 413, 978
BcoDI	GTCTC	2 cut(s)	185, 966
BfaI	CTAG	1 cut(s)	782
BfmI	CTRYAG	2 cut(s)	513, 875
BglII	AGATCT	1 cut(s)	927
BisI	GCNGC	4 cut(s)	390, 639, 642, 875
BlsI	GCNGC	4 cut(s)	391, 640, 643, 876
Bme1390I	CCNGG	5 cut(s)	56, 228, 266, 413, 978
Bme18I	GGWCC	1 cut(s)	262
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmgT120I	GGNCC	3 cut(s)	15, 262, 481
BmiI	GGNNCC	5 cut(s)	37, 153, 482, 651, 772
BmrFI	CCNGG	5 cut(s)	56, 228, 266, 413, 978
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	2 cut(s)	256, 1012
BmuI	ACTGGG	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	876
BsaI	GGTCTC	1 cut(s)	966
BsaJI	CCNNGG	2 cut(s)	411, 976
BsaWI	WCCGGW	1 cut(s)	964
BsaXI	ACNNNNNCTCC	2 cut(s)	1053, 1083
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse1I	ACTGG	2 cut(s)	18, 700
BseBI	CCWGG	5 cut(s)	56, 228, 266, 413, 978
BseDI	CCNNGG	2 cut(s)	411, 976
BseGI	GGATG	2 cut(s)	586, 1027
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMII	CTCAG	2 cut(s)	180, 380
BseNI	ACTGG	2 cut(s)	18, 700
BseRI	GAGGAG	3 cut(s)	71, 533, 1074
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	4 cut(s)	401, 625, 628, 861
BshFI	GGCC	2 cut(s)	16, 483
BshNI	GGYRCC	3 cut(s)	151, 649, 770
BsiHKAI	GWGCWC	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	965
BslFI	GGGAC	1 cut(s)	598
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	2 cut(s)	185, 966
BsmFI	GGGAC	1 cut(s)	598
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	2 cut(s)	16, 483
Bso31I	GGTCTC	1 cut(s)	966
Bsp1286I	GDGCHC	2 cut(s)	40, 559
Bsp143I	GATC	2 cut(s)	908, 927
BspACI	CCGC	3 cut(s)	428, 708, 746
BspANI	GGCC	2 cut(s)	16, 483
BspCNI	CTCAG	2 cut(s)	181, 379
BspLI	GGNNCC	5 cut(s)	37, 153, 482, 651, 772
BspMAI	CTGCAG	1 cut(s)	879
BspQI	GCTCTTC	2 cut(s)	514, 864
BspT107I	GGYRCC	3 cut(s)	151, 649, 770
BspTNI	GGTCTC	1 cut(s)	966
BsrI	ACTGG	2 cut(s)	18, 700
BssECI	CCNNGG	2 cut(s)	411, 976
BssMI	GATC	2 cut(s)	908, 927
Bst2UI	CCWGG	5 cut(s)	56, 228, 266, 413, 978
Bst4CI	ACNGT	2 cut(s)	204, 561
Bst6I	CTCTTC	4 cut(s)	175, 514, 831, 864
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	879, 1044
BstDEI	CTNAG	2 cut(s)	189, 366
BstF5I	GGATG	2 cut(s)	586, 1027
BstKTI	GATC	2 cut(s)	911, 930
BstMAI	GTCTC	2 cut(s)	185, 966
BstMBI	GATC	2 cut(s)	908, 927
BstMWI	GCNNNNNNNGC	3 cut(s)	395, 887, 1039
BstNI	CCWGG	5 cut(s)	56, 228, 266, 413, 978
BstSCI	CCNGG	5 cut(s)	54, 226, 264, 411, 976
BstSFI	CTRYAG	2 cut(s)	513, 875
BstSLI	GKGCMC	1 cut(s)	559
BstV1I	GCAGC	4 cut(s)	401, 625, 628, 861
BstX2I	RGATCY	1 cut(s)	927
BstYI	RGATCY	1 cut(s)	927
BsuRI	GGCC	2 cut(s)	16, 483
BtsCI	GGATG	2 cut(s)	586, 1027
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	2 cut(s)	879, 1044
Cfr13I	GGNCC	3 cut(s)	15, 262, 481
CsiI	ACCWGGT	1 cut(s)	226
Csp6I	GTAC	4 cut(s)	21, 152, 650, 937
CviAII	CATG	2 cut(s)	446, 588
CviQI	GTAC	4 cut(s)	21, 152, 650, 937
DdeI	CTNAG	2 cut(s)	189, 366
DpnI	GATC	2 cut(s)	910, 929
DpnII	GATC	2 cut(s)	908, 927
DraI	TTTAAA	1 cut(s)	28
DriI	GACNNNNNGTC	1 cut(s)	202
Eam1104I	CTCTTC	4 cut(s)	175, 514, 831, 864
Eam1105I	GACNNNNNGTC	1 cut(s)	202
EarI	CTCTTC	4 cut(s)	175, 514, 831, 864
EciI	GGCGGA	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	966
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	812
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRII	CCWGG	5 cut(s)	54, 226, 264, 411, 976
EcoT38I	GRGCYC	1 cut(s)	40
FaeI	CATG	2 cut(s)	449, 591
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	2 cut(s)	445, 587
FauI	CCCGC	1 cut(s)	701
Fnu4HI	GCNGC	4 cut(s)	390, 639, 642, 875
FokI	GGATG	2 cut(s)	593, 1034
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	4 cut(s)	390, 639, 642, 875
FspBI	CTAG	1 cut(s)	782
GluI	GCNGC	4 cut(s)	390, 639, 642, 875
GsuI	CTGGAG	1 cut(s)	876
HaeIII	GGCC	2 cut(s)	16, 483
HapII	CCGG	1 cut(s)	965
Hin1II	CATG	2 cut(s)	449, 591
HpaII	CCGG	1 cut(s)	965
HphI	GGTGA	3 cut(s)	541, 583, 1066
Hpy166II	GTNNAC	4 cut(s)	207, 363, 557, 923
Hpy188I	TCNGA	5 cut(s)	369, 616, 681, 734, 1092
Hpy188III	TCNNGA	2 cut(s)	490, 632
Hpy8I	GTNNAC	4 cut(s)	207, 363, 557, 923
HpyAV	CCTTC	3 cut(s)	300, 761, 836
HpyCH4III	ACNGT	2 cut(s)	204, 561
HpyF10VI	GCNNNNNNNGC	3 cut(s)	395, 887, 1039
HpyF3I	CTNAG	2 cut(s)	189, 366
Hsp92II	CATG	2 cut(s)	449, 591
KpnI	GGTACC	2 cut(s)	155, 653
Kzo9I	GATC	2 cut(s)	908, 927
LguI	GCTCTTC	2 cut(s)	514, 864
LmnI	GCTCC	4 cut(s)	35, 58, 84, 895
Lsp1109I	GCAGC	4 cut(s)	401, 625, 628, 861
LweI	GCATC	2 cut(s)	256, 1012
MabI	ACCWGGT	1 cut(s)	226
MaeI	CTAG	1 cut(s)	782
MaeIII	GTNAC	2 cut(s)	487, 815
MalI	GATC	2 cut(s)	910, 929
MboI	GATC	2 cut(s)	908, 927
MboII	GAAGA	6 cut(s)	192, 267, 501, 620, 848, 881
MflI	RGATCY	1 cut(s)	927
MhlI	GDGCHC	2 cut(s)	40, 559
MluCI	AATT	9 cut(s)	49, 241, 371, 575, 683, 794, 861, 946, 960
MseI	TTAA	5 cut(s)	27, 162, 321, 843, 917
MspA1I	CMGCKG	2 cut(s)	392, 708
MspI	CCGG	1 cut(s)	965
MspR9I	CCNGG	5 cut(s)	56, 228, 266, 413, 978
Mva1269I	GAATGC	1 cut(s)	695
MvaI	CCWGG	5 cut(s)	56, 228, 266, 413, 978
MwoI	GCNNNNNNNGC	3 cut(s)	395, 887, 1039
NdeII	GATC	2 cut(s)	908, 927
NlaIII	CATG	2 cut(s)	449, 591
NlaIV	GGNNCC	5 cut(s)	37, 153, 482, 651, 772
NmuCI	GTSAC	1 cut(s)	487
PciSI	GCTCTTC	2 cut(s)	514, 864
PctI	GAATGC	1 cut(s)	695
PflMI	CCANNNNNTGG	1 cut(s)	418
PkrI	GCNGC	4 cut(s)	391, 640, 643, 876
PshBI	ATTAAT	1 cut(s)	843
PsiI	TTATAA	1 cut(s)	546
Psp6I	CCWGG	5 cut(s)	54, 226, 264, 411, 976
PspGI	CCWGG	5 cut(s)	54, 226, 264, 411, 976
PspN4I	GGNNCC	5 cut(s)	37, 153, 482, 651, 772
PspPI	GGNCC	3 cut(s)	15, 262, 481
PstI	CTGCAG	1 cut(s)	879
PsuI	RGATCY	1 cut(s)	927
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	4 cut(s)	22, 153, 651, 938
RsaNI	GTAC	4 cut(s)	21, 152, 650, 937
SapI	GCTCTTC	2 cut(s)	514, 864
SaqAI	TTAA	5 cut(s)	27, 162, 321, 843, 917
SatI	GCNGC	4 cut(s)	390, 639, 642, 875
Sau3AI	GATC	2 cut(s)	908, 927
Sau96I	GGNCC	3 cut(s)	15, 262, 481
ScrFI	CCNGG	5 cut(s)	56, 228, 266, 413, 978
SduI	GDGCHC	2 cut(s)	40, 559
SexAI	ACCWGGT	1 cut(s)	226
SfaNI	GCATC	2 cut(s)	256, 1012
SfcI	CTRYAG	2 cut(s)	513, 875
SinI	GGWCC	1 cut(s)	262
Sse9I	AATT	9 cut(s)	49, 241, 371, 575, 683, 794, 861, 946, 960
SsiI	CCGC	3 cut(s)	428, 708, 746
SspI	AATATT	1 cut(s)	900
SspMI	CTAG	1 cut(s)	782
StyD4I	CCNGG	5 cut(s)	54, 226, 264, 411, 976
TaaI	ACNGT	2 cut(s)	204, 561
TasI	AATT	9 cut(s)	49, 241, 371, 575, 683, 794, 861, 946, 960
Tru1I	TTAA	5 cut(s)	27, 162, 321, 843, 917
Tru9I	TTAA	5 cut(s)	27, 162, 321, 843, 917
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	4 cut(s)	389, 638, 641, 874
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	1 cut(s)	108
TspGWI	ACGGA	3 cut(s)	369, 710, 932
TspRI	CASTG	1 cut(s)	423
Van91I	CCANNNNNTGG	1 cut(s)	418
VneI	GTGCAC	1 cut(s)	555
VpaK11BI	GGWCC	1 cut(s)	262
VspI	ATTAAT	1 cut(s)	843
XapI	RAATTY	5 cut(s)	241, 371, 683, 794, 960
XspI	CTAG	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.