Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008453

Physical Location & Seq

Genomic Coordinates Reverse (-)

62166741 .. 62171161

Gene Structure 4421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG458400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGACCTGGCTTTGGCGTCTCCGTTGTTCCCTTCAAATGTAACAAGAGGTGTCGATAAGATTAAGCCGTTTAGCTCAATGTTTGCCACCCGAAAGATGCCTGCTCGAAAATTGTTTCCTTGTTTGGCAGCAGTTGCTACCCAAACACCCCAGACAGTGGAGTTTGATGTAGAGAGCAAGAAATATGAGCTGTTGAGAGCTGTCCAAGACACAAAAAGGGGCCTTGTTACAACCGACGATCAACGCTCTTCTATAGAGGAGGCTCTGGTGACTGTGGAGGGATATAACAAGGGTGCACCTTTAGACTTGGTGAAGTTGGATGGGACATGGCGGTTGCAATATACTTCTGCTCCTGATGTTCTCATTCTTCTGGAAGCAGCTGAAAGGGTATCTTTCTTTCAGGTGGGGCAGATATTTCAAAATTTTGAATGCAAAGACCAATCCAACGGCGGTATAATCCGTAATGTTGTCAGATGGAGTGTTCCACCGTTGTTAGAGGAAGAAGACGGTGCTACTCTTCTAGTTTCTGCCAAGTTTTCTGTTGTTTCCGTGCGTAACATCTATCTTCAGTTTGAAGAGGTCAGTTTTCCTTCATTTCTTAAAACATATGGAAGGAGTGCTGTCATTGTTCCTCTTATATTGGTTGCACTGCCAAAGAAACACTTTAAAGGAATTCAACTGCAACATATCAAACTGACAATGTTTATACTAATGTTGTTAATTCTTAAGTACAACCCATGCCCAGAAAAGATAGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

253

Amino Acids

28.37

Weight (kDa)

8.88

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	60 - 196	1.5e-19	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46910
fragaria_vesca	FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990
malus_domestica	MD17G1162500.v1.1
prunus_persica	Prupe.3G022800_v2.0.a1 Prupe.3G022800_v2.0.a1 Prupe.3G022800_v2.0.a1
pyrus_communis	pycom17g15560
rosa_chinensis	RchiOBHm_Chr2g0149531
rosa_laevigata	RLG00000020417
rosa_multiflora	Rmu_sc0006867.1_g000012 Rmu_sc0008619.1_g000008
rosa_roxburghii	Rroxscaffold_2G00098040
rosa_rugosa	Rorug02G0412100
rosa_samantha	Rh2AG472500 Rh2BG484500 Rh2CG458400 Rh2DG493700
rosa_wichuraiana	Rw2G038510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AciI	CCGC	2 cut(s)	331, 450
AcsI	RAATTY	2 cut(s)	421, 672
AcuI	CTGAAG	1 cut(s)	551
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	2 cut(s)	13, 157
AflII	CTTAAG	1 cut(s)	725
AgsI	TTSAA	5 cut(s)	36, 419, 428, 575, 677
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	4 cut(s)	75, 190, 200, 380
AluI	AGCT	4 cut(s)	75, 190, 200, 380
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	294
AoxI	GGCC	1 cut(s)	220
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	128, 377
ApoI	RAATTY	2 cut(s)	421, 672
AspS9I	GGNCC	2 cut(s)	4, 220
AsuHPI	GGTGA	2 cut(s)	280, 322
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	140, 389
BccI	CCATC	2 cut(s)	314, 468
BceAI	ACGGC	2 cut(s)	52, 463
BciT130I	CCWGG	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	1 cut(s)	252
BfrI	CTTAAG	1 cut(s)	725
BisI	GCNGC	2 cut(s)	129, 378
BlsI	GCNGC	2 cut(s)	130, 379
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 220
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 157
BseBI	CCWGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	13, 157
BseRI	GAGGAG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	140, 389
BshFI	GGCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	2 cut(s)	13, 157
BsmAI	GTCTC	1 cut(s)	24
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	2 cut(s)	331, 450
BspANI	GGCC	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	221
BspQI	GCTCTTC	1 cut(s)	253
BspTI	CTTAAG	1 cut(s)	725
BssMI	GATC	1 cut(s)	238
BssNI	GRCGYC	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	4 cut(s)	157, 274, 489, 509
Bst6I	CTCTTC	3 cut(s)	253, 522, 570
BstACI	GRCGYC	1 cut(s)	17
BstAFI	CTTAAG	1 cut(s)	725
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	140, 389
BstV2I	GAAGAC	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	647
BtsIMutI	CAGTG	2 cut(s)	162, 647
Cac8I	GCNNGC	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	4, 220
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	2 cut(s)	327, 738
CviJI	RGCY	9 cut(s)	11, 67, 75, 190, 200, 222, 263, 380, 758
CviKI_1	RGCY	9 cut(s)	11, 67, 75, 190, 200, 222, 263, 380, 758
CviQI	GTAC	1 cut(s)	730
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DraI	TTTAAA	1 cut(s)	667
Eam1104I	CTCTTC	3 cut(s)	253, 522, 570
EarI	CTCTTC	3 cut(s)	253, 522, 570
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	672
EcoRII	CCWGG	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	2 cut(s)	330, 741
FalI	AAGNNNNNCTT	4 cut(s)	376, 408, 647, 679
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	2 cut(s)	326, 737
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	2 cut(s)	129, 378
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	2 cut(s)	129, 378
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	2 cut(s)	129, 378
HaeIII	GGCC	1 cut(s)	222
HgaI	GACGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	330, 741
HphI	GGTGA	2 cut(s)	280, 322
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	1 cut(s)	473
Hpy188III	TCNNGA	2 cut(s)	353, 371
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	42, 600, 606
HpyCH4III	ACNGT	4 cut(s)	157, 274, 489, 509
HpyCH4V	TGCA	5 cut(s)	296, 337, 432, 647, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	330, 741
Kzo9I	GATC	1 cut(s)	238
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	8 cut(s)	20, 114, 164, 251, 356, 366, 386, 756
Lsp1109I	GCAGC	2 cut(s)	140, 389
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	521
MaeIII	GTNAC	4 cut(s)	40, 226, 268, 554
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	7 cut(s)	240, 359, 509, 512, 515, 557, 587
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	4 cut(s)	110, 421, 672, 720
MmeI	TCCRAC	2 cut(s)	297, 468
MnlI	CCTC	7 cut(s)	41, 250, 253, 271, 490, 571, 642
MseI	TTAA	5 cut(s)	63, 600, 666, 719, 726
MspA1I	CMGCKG	1 cut(s)	380
MspCI	CTTAAG	1 cut(s)	725
MspR9I	CCNGG	1 cut(s)	8
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	330, 741
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	253
PctI	GAATGC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	130, 379
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	2 cut(s)	4, 220
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
SapI	GCTCTTC	1 cut(s)	253
SaqAI	TTAA	5 cut(s)	63, 600, 666, 719, 726
SatI	GCNGC	2 cut(s)	129, 378
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	2 cut(s)	4, 220
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	9 cut(s)	9, 52, 77, 192, 202, 301, 382, 405, 582
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	4 cut(s)	110, 421, 672, 720
SsiI	CCGC	2 cut(s)	331, 450
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	6
TaaI	ACNGT	4 cut(s)	157, 274, 489, 509
TaqI	TCGA	2 cut(s)	54, 106
TasI	AATT	4 cut(s)	110, 421, 672, 720
TatI	WGTACW	1 cut(s)	729
Tru1I	TTAA	5 cut(s)	63, 600, 666, 719, 726
Tru9I	TTAA	5 cut(s)	63, 600, 666, 719, 726
TscAI	CASTG	2 cut(s)	162, 654
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	128, 377
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	582
TspGWI	ACGGA	3 cut(s)	12, 449, 538
TspRI	CASTG	2 cut(s)	162, 654
Van91I	CCANNNNNTGG	1 cut(s)	157
Vha464I	CTTAAG	1 cut(s)	725
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	421, 672
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.