Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008619.1

Orthogroup ID

OG0008453

Physical Location & Seq

Genomic Coordinates Reverse (-)

27472 .. 29802

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008619.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgacggtgtttgggttccagacagtggagtttgatgtagagagcaagaaatatgagctgttgagagctgtccaagacacaaaaaggggccttgttacaaccgacgatcaacgctcttctatagaggaggctctggtgactgtggagggatataacaagggtgcacctttagacttggtgaagttggatgggacatggcggttgcaatatacttctgctcctgatgttctcattcttctggaagcagctgaaagggtatctttctttcaggtggggcagatatttcaaaaatttgaatgcaaagaccaatccaacggcggtataatccgtaatgttgtcagatggagtgttccaccgttgttagaggaagaagacggtgctactcttctagtttctgccaagttttctgttgtttccatgcgtaacatctatcttcagtttgaagagattagtgttcaaaatataaaaattggtgaacagctgcaggctcttatagctccagcattactgccgaggtcatttttgagtttacagatcttacagttcctccgcactttcaaagcccaaattcctgttagtgatccaggaacaggaaggcaatccgtaggaggactctattacctttcttacttggatgctaatatgcttttggggcgtgcggttggtggcggaggagtttttgttttcactaaagctcaacccctggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

236

Amino Acids

26.23

Weight (kDa)

5.12

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46910
fragaria_vesca	FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990
malus_domestica	MD17G1162500.v1.1
prunus_persica	Prupe.3G022800_v2.0.a1 Prupe.3G022800_v2.0.a1 Prupe.3G022800_v2.0.a1
pyrus_communis	pycom17g15560
rosa_chinensis	RchiOBHm_Chr2g0149531
rosa_laevigata	RLG00000020417
rosa_multiflora	Rmu_sc0006867.1_g000012 Rmu_sc0008619.1_g000008
rosa_roxburghii	Rroxscaffold_2G00098040
rosa_rugosa	Rorug02G0412100
rosa_samantha	Rh2AG472500 Rh2BG484500 Rh2CG458400 Rh2DG493700
rosa_wichuraiana	Rw2G038510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	25
AciI	CCGC	5 cut(s)	199, 318, 550, 659, 669
AclWI	GGATC	1 cut(s)	575
AcsI	RAATTY	2 cut(s)	290, 567
AcuI	CTGAAG	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	25, 590
AgsI	TTSAA	5 cut(s)	287, 296, 443, 458, 559
AjnI	CCWGG	2 cut(s)	583, 702
AluBI	AGCT	6 cut(s)	58, 68, 248, 481, 497, 695
AluI	AGCT	6 cut(s)	58, 68, 248, 481, 497, 695
Alw21I	GWGCWC	1 cut(s)	166
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	575
AoxI	GGCC	1 cut(s)	88
ApaLI	GTGCAC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	245, 481
ApoI	RAATTY	2 cut(s)	290, 567
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	3 cut(s)	148, 190, 485
BaeGI	GKGCMC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	257, 468
BccI	CCATC	2 cut(s)	182, 336
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	2 cut(s)	585, 704
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	2 cut(s)	120, 482
BglII	AGATCT	1 cut(s)	534
BisI	GCNGC	2 cut(s)	246, 482
BlsI	GCNGC	2 cut(s)	247, 483
Bme1390I	CCNGG	2 cut(s)	585, 704
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	17, 89
BmrFI	CCNGG	2 cut(s)	585, 704
BmsI	GCATC	1 cut(s)	625
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	512, 702
BsaXI	ACNNNNNCTCC	6 cut(s)	202, 232, 531, 561, 666, 696
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 590
BseBI	CCWGG	2 cut(s)	585, 704
BseDI	CCNNGG	2 cut(s)	512, 702
BseGI	GGATG	2 cut(s)	193, 640
BseLI	CCNNNNNNNGG	2 cut(s)	25, 590
BseRI	GAGGAG	2 cut(s)	140, 687
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	257, 468
BshFI	GGCC	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	25, 590
BsmFI	GGGAC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	3 cut(s)	106, 534, 580
BspACI	CCGC	5 cut(s)	199, 318, 550, 659, 669
BspANI	GGCC	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	17, 89
BspMAI	CTGCAG	1 cut(s)	486
BspPI	GGATC	1 cut(s)	575
BspQI	GCTCTTC	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	512, 702
BssMI	GATC	3 cut(s)	106, 534, 580
Bst2UI	CCWGG	2 cut(s)	585, 704
Bst4CI	ACNGT	6 cut(s)	7, 25, 142, 357, 377, 543
Bst6I	CTCTTC	3 cut(s)	121, 390, 438
BstC8I	GCNNGC	2 cut(s)	486, 657
BstF5I	GGATG	2 cut(s)	193, 640
BstKTI	GATC	3 cut(s)	109, 537, 583
BstMBI	GATC	3 cut(s)	106, 534, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 652
BstNI	CCWGG	2 cut(s)	585, 704
BstSCI	CCNGG	2 cut(s)	583, 702
BstSFI	CTRYAG	2 cut(s)	120, 482
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	257, 468
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	534
BstYI	RGATCY	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	193, 640
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	486, 657
Cfr13I	GGNCC	1 cut(s)	88
CviAII	CATG	2 cut(s)	195, 418
DpnI	GATC	3 cut(s)	108, 536, 582
DpnII	GATC	3 cut(s)	106, 534, 580
Eam1104I	CTCTTC	3 cut(s)	121, 390, 438
EarI	CTCTTC	3 cut(s)	121, 390, 438
EciI	GGCGGA	1 cut(s)	684
Eco57I	CTGAAG	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	583, 702
FaeI	CATG	2 cut(s)	198, 421
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	2 cut(s)	194, 417
Fnu4HI	GCNGC	2 cut(s)	246, 482
FokI	GGATG	2 cut(s)	200, 647
Fsp4HI	GCNGC	2 cut(s)	246, 482
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	2 cut(s)	246, 482
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	198, 421
HinfI	GANTC	1 cut(s)	612
HphI	GGTGA	3 cut(s)	148, 190, 485
Hpy166II	GTNNAC	3 cut(s)	164, 476, 530
Hpy188I	TCNGA	1 cut(s)	341
Hpy188III	TCNNGA	3 cut(s)	19, 221, 239
Hpy8I	GTNNAC	3 cut(s)	164, 476, 530
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	588
HpyCH4III	ACNGT	6 cut(s)	7, 25, 142, 357, 377, 543
HpyCH4V	TGCA	4 cut(s)	164, 205, 300, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 652
Hsp92II	CATG	2 cut(s)	198, 421
Kzo9I	GATC	3 cut(s)	106, 534, 580
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	2 cut(s)	223, 502
Lsp1109I	GCAGC	2 cut(s)	257, 468
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	3 cut(s)	94, 136, 422
MalI	GATC	3 cut(s)	108, 536, 582
MboI	GATC	3 cut(s)	106, 534, 580
MboII	GAAGA	7 cut(s)	108, 227, 377, 380, 383, 425, 455
MflI	RGATCY	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	3 cut(s)	290, 468, 567
MlyI	GAGTC	1 cut(s)	606
MmeI	TCCRAC	2 cut(s)	165, 336
MnlI	CCTC	8 cut(s)	118, 121, 139, 358, 507, 557, 602, 665
MspA1I	CMGCKG	2 cut(s)	248, 481
MspR9I	CCNGG	2 cut(s)	585, 704
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	585, 704
MwoI	GCNNNNNNNGC	2 cut(s)	494, 652
NdeII	GATC	3 cut(s)	106, 534, 580
NlaIII	CATG	2 cut(s)	198, 421
NlaIV	GGNNCC	2 cut(s)	17, 89
NmeAIII	GCCGAG	1 cut(s)	537
NmuCI	GTSAC	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	121
PctI	GAATGC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	583
PkrI	GCNGC	2 cut(s)	247, 483
PleI	GAGTC	1 cut(s)	606
PpsI	GAGTC	1 cut(s)	606
Psp6I	CCWGG	2 cut(s)	583, 702
PspGI	CCWGG	2 cut(s)	583, 702
PspN4I	GGNNCC	2 cut(s)	17, 89
PspPI	GGNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	534
PvuII	CAGCTG	2 cut(s)	248, 481
SapI	GCTCTTC	1 cut(s)	121
SatI	GCNGC	2 cut(s)	246, 482
Sau3AI	GATC	3 cut(s)	106, 534, 580
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	606
ScrFI	CCNGG	2 cut(s)	585, 704
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	2 cut(s)	120, 482
Sse9I	AATT	3 cut(s)	290, 468, 567
SsiI	CCGC	5 cut(s)	199, 318, 550, 659, 669
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	583, 702
TaaI	ACNGT	6 cut(s)	7, 25, 142, 357, 377, 543
TasI	AATT	3 cut(s)	290, 468, 567
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	245, 481
Tsp45I	GTSAC	1 cut(s)	136
TspGWI	ACGGA	2 cut(s)	317, 592
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	25
VneI	GTGCAC	1 cut(s)	162
XapI	RAATTY	2 cut(s)	290, 567
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.