FvH4_6g36990

plastid-lipid-associated protein 10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008453
Physical Location & Seq
Reverse (-)
29053668 .. 29057242
3575 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36990.t4

Sequence Viewer

Length: 843 bp
ATGGAACTGGCTTTGGCGTCTCCGTTGTTCCCTTCAAATGTTACAAGAGGTGTCGATAAGATTAAGCCTTTTAGCTCAATGTTTGCCACCCGAAAGCTGCCTGCTCGAACATTGTTTCCTTGTTTGGCAGCTGTGGCTACCCAAACACCCCAGACTGTGGAGTTTGATGTAGAGAGCAAAAAACATGAGCTGTTGAGAGCTGTCCAAGACACAAAAAGGGGCCTTGTTACAACTGATGATCAGCGCTCTTCTATAGAGGAGGTTCTGGTGACTGTGGAAGGATATAACAAGGGTGCACCTTTAGACTTGGTGAAGTTGGATGGGACATGGCGGTTGCAATATACTTCTGCTTCTGATGTTCTCATTCTTCTGGAAGCAGCTGAAAGGGTATCTTTCTTTCAGGTTGGGCAGATATTTCAAAAATTTGAATGCAGAGACCAGTCCAACGGGGGTATAATTCGTAACGTTGTCAGATGGAGTGTTCCACCATTGTTAGAGGAAGAAGATGGTGCTACTCTGCTAGTTTCTGCCAAGTTTTCTATTGTCTCCAGGCGTAACATCTATCTTCAGTTTGAAGAGATTAGTGTTCAAAATATAAAAATTGGTGAACAGCTGCAGGCTTTTATAGCTCCAGCATTACTTCCGCGATCGTTTTTAAGTTTGCAGATCTTACAGTTCCTCCGGACTTTCAAAGCTCAAATTCCTGTTAATGATCCAGGAACAGGAAGGCAATCAGTAGGAGGACTCTATTACCTTTCTTACTTGGATGGAAATATGCTTTTGGGACGTGCCGTTGGTGGCGGAGGAGTTTTTGTTTTCACTAAAGCTCAACCCCTGGAGTAG

Protein Analysis

281

Amino Acids

31.03

Weight (kDa)

7.71

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 60 - 196 3.4e-20 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 157
AccII CGCG 1 cut(s) 646
AccIII TCCGGA 1 cut(s) 681
AciI CCGC 3 cut(s) 331, 644, 801
AclI AACGTT 1 cut(s) 465
AclWI GGATC 1 cut(s) 707
AcsI RAATTY 2 cut(s) 422, 699
AcuI CTGAAG 1 cut(s) 551
AcyI GRCGYC 1 cut(s) 17
AfeI AGCGCT 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 157, 722
AgsI TTSAA 6 cut(s) 36, 419, 428, 575, 590, 691
AjiI CACGTC 1 cut(s) 788
AjnI CCWGG 3 cut(s) 548, 715, 834
AloI GAACNNNNNNTCC 2 cut(s) 100, 132
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 3 cut(s) 24, 429, 550
Alw44I GTGCAC 1 cut(s) 294
AlwI GGATC 1 cut(s) 707
Aor13HI TCCGGA 1 cut(s) 681
Aor51HI AGCGCT 1 cut(s) 245
AoxI GGCC 1 cut(s) 220
ApaLI GTGCAC 1 cut(s) 294
ApeKI GCWGC 4 cut(s) 97, 128, 377, 613
ApoI RAATTY 2 cut(s) 422, 699
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 3 cut(s) 280, 322, 617
BaeGI GKGCMC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 4 cut(s) 84, 140, 389, 600
BccI CCATC 4 cut(s) 314, 468, 500, 761
BceAI ACGGC 1 cut(s) 776
BciT130I CCWGG 3 cut(s) 550, 717, 836
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 3 cut(s) 24, 429, 550
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 2 cut(s) 252, 614
BfoI RGCGCY 1 cut(s) 247
BglII AGATCT 1 cut(s) 666
BisI GCNGC 4 cut(s) 98, 129, 378, 614
BlsI GCNGC 4 cut(s) 99, 130, 379, 615
Bme1390I CCNGG 3 cut(s) 550, 717, 836
BmgBI CACGTC 1 cut(s) 788
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 3 cut(s) 550, 717, 836
BpmI CTGGAG 2 cut(s) 532, 615
BsaHI GRCGYC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 834
BsaWI WCCGGW 1 cut(s) 681
BsaXI ACNNNNNCTCC 4 cut(s) 663, 693, 798, 828
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 722
Bse1I ACTGG 2 cut(s) 12, 439
BseAI TCCGGA 1 cut(s) 681
BseBI CCWGG 3 cut(s) 550, 717, 836
BseDI CCNNGG 1 cut(s) 834
BseGI GGATG 2 cut(s) 325, 772
BseLI CCNNNNNNNGG 2 cut(s) 157, 722
BseNI ACTGG 2 cut(s) 12, 439
BseRI GAGGAG 2 cut(s) 272, 819
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 4 cut(s) 84, 140, 389, 600
Bsh1236I CGCG 1 cut(s) 646
Bsh1285I CGRYCG 1 cut(s) 650
BshFI GGCC 1 cut(s) 222
BsiEI CGRYCG 1 cut(s) 650
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 1 cut(s) 682
BslFI GGGAC 2 cut(s) 337, 798
BslI CCNNNNNNNGG 2 cut(s) 157, 722
BsmAI GTCTC 3 cut(s) 24, 429, 550
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 2 cut(s) 337, 798
BsmI GAATGC 1 cut(s) 434
BsnI GGCC 1 cut(s) 222
Bso31I GGTCTC 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 298
Bsp13I TCCGGA 1 cut(s) 681
Bsp143I GATC 4 cut(s) 238, 647, 666, 712
BspACI CCGC 3 cut(s) 331, 644, 801
BspANI GGCC 1 cut(s) 222
BspEI TCCGGA 1 cut(s) 681
BspFNI CGCG 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 221
BspMAI CTGCAG 1 cut(s) 618
BspPI GGATC 1 cut(s) 707
BspQI GCTCTTC 1 cut(s) 253
BspTNI GGTCTC 1 cut(s) 429
BsrI ACTGG 2 cut(s) 12, 439
BssECI CCNNGG 1 cut(s) 834
BssMI GATC 4 cut(s) 238, 647, 666, 712
BssNI GRCGYC 1 cut(s) 17
Bst2UI CCWGG 3 cut(s) 550, 717, 836
Bst4CI ACNGT 3 cut(s) 157, 274, 675
Bst6I CTCTTC 2 cut(s) 253, 570
BstACI GRCGYC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 102, 618
BstF5I GGATG 2 cut(s) 325, 772
BstFNI CGCG 1 cut(s) 646
BstH2I RGCGCY 1 cut(s) 247
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 4 cut(s) 241, 650, 669, 715
BstMAI GTCTC 3 cut(s) 24, 429, 550
BstMBI GATC 4 cut(s) 238, 647, 666, 712
BstMCI CGRYCG 1 cut(s) 650
BstMWI GCNNNNNNNGC 2 cut(s) 134, 626
BstNI CCWGG 3 cut(s) 550, 717, 836
BstSCI CCNGG 3 cut(s) 548, 715, 834
BstSFI CTRYAG 2 cut(s) 252, 614
BstSLI GKGCMC 1 cut(s) 298
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 4 cut(s) 84, 140, 389, 600
BstX2I RGATCY 1 cut(s) 666
BstYI RGATCY 1 cut(s) 666
BsuRI GGCC 1 cut(s) 222
BtrI CACGTC 1 cut(s) 788
BtsCI GGATG 2 cut(s) 325, 772
Cac8I GCNNGC 2 cut(s) 102, 618
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 1 cut(s) 6
CviAII CATG 2 cut(s) 185, 327
DpnI GATC 4 cut(s) 240, 649, 668, 714
DpnII GATC 4 cut(s) 238, 647, 666, 712
Eam1104I CTCTTC 2 cut(s) 253, 570
EarI CTCTTC 2 cut(s) 253, 570
EciI GGCGGA 1 cut(s) 816
Eco31I GGTCTC 1 cut(s) 429
Eco47III AGCGCT 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 551
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 3 cut(s) 548, 715, 834
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 2 cut(s) 188, 330
FaiI YATR 9 cut(s) 186, 254, 285, 328, 342, 455, 596, 626, 776
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FaqI GGGAC 2 cut(s) 337, 798
FatI CATG 2 cut(s) 184, 326
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 4 cut(s) 98, 129, 378, 614
FokI GGATG 2 cut(s) 332, 779
Fsp4HI GCNGC 4 cut(s) 98, 129, 378, 614
FspBI CTAG 1 cut(s) 521
GlaI GCGC 1 cut(s) 245
GluI GCNGC 4 cut(s) 98, 129, 378, 614
GsuI CTGGAG 2 cut(s) 532, 615
HaeII RGCGCY 1 cut(s) 247
HaeIII GGCC 1 cut(s) 222
HapII CCGG 1 cut(s) 682
HgaI GACGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 2 cut(s) 188, 330
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HinfI GANTC 1 cut(s) 744
HpaII CCGG 1 cut(s) 682
HphI GGTGA 3 cut(s) 280, 322, 617
Hpy166II GTNNAC 2 cut(s) 296, 608
Hpy188I TCNGA 2 cut(s) 355, 473
Hpy188III TCNNGA 2 cut(s) 371, 682
Hpy8I GTNNAC 2 cut(s) 296, 608
HpyAV CCTTC 3 cut(s) 42, 272, 720
HpyCH4III ACNGT 3 cut(s) 157, 274, 675
HpyCH4IV ACGT 2 cut(s) 465, 787
HpyCH4V TGCA 5 cut(s) 296, 337, 432, 616, 664
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 626
HpySE526I ACGT 2 cut(s) 465, 787
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 2 cut(s) 188, 330
HspAI GCGC 1 cut(s) 244
Kpn2I TCCGGA 1 cut(s) 681
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 4 cut(s) 238, 647, 666, 712
LguI GCTCTTC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 634
Lsp1109I GCAGC 4 cut(s) 84, 140, 389, 600
MaeI CTAG 1 cut(s) 521
MaeII ACGT 2 cut(s) 465, 787
MaeIII GTNAC 5 cut(s) 40, 226, 268, 461, 554
MalI GATC 4 cut(s) 240, 649, 668, 714
MboI GATC 4 cut(s) 238, 647, 666, 712
MboII GAAGA 6 cut(s) 240, 359, 512, 515, 557, 587
MflI RGATCY 1 cut(s) 666
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 4 cut(s) 422, 456, 600, 699
MlyI GAGTC 1 cut(s) 738
MmeI TCCRAC 2 cut(s) 297, 468
MnlI CCTC 7 cut(s) 41, 250, 253, 490, 689, 734, 797
MroI TCCGGA 1 cut(s) 681
MseI TTAA 3 cut(s) 63, 656, 708
MspA1I CMGCKG 3 cut(s) 131, 380, 613
MspI CCGG 1 cut(s) 682
MspR9I CCNGG 3 cut(s) 550, 717, 836
Mva1269I GAATGC 1 cut(s) 434
MvaI CCWGG 3 cut(s) 550, 717, 836
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 2 cut(s) 134, 626
NdeII GATC 4 cut(s) 238, 647, 666, 712
NlaIII CATG 2 cut(s) 188, 330
NlaIV GGNNCC 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 253
PctI GAATGC 1 cut(s) 434
PflMI CCANNNNNTGG 1 cut(s) 157
PfoI TCCNGGA 1 cut(s) 715
PkrI GCNGC 4 cut(s) 99, 130, 379, 615
Ple19I CGATCG 1 cut(s) 650
PleI GAGTC 1 cut(s) 738
PpsI GAGTC 1 cut(s) 738
Psp1406I AACGTT 1 cut(s) 465
Psp6I CCWGG 3 cut(s) 548, 715, 834
PspGI CCWGG 3 cut(s) 548, 715, 834
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 220
PstI CTGCAG 1 cut(s) 618
PsuI RGATCY 1 cut(s) 666
PvuI CGATCG 1 cut(s) 650
PvuII CAGCTG 3 cut(s) 131, 380, 613
SapI GCTCTTC 1 cut(s) 253
SaqAI TTAA 3 cut(s) 63, 656, 708
SatI GCNGC 4 cut(s) 98, 129, 378, 614
Sau3AI GATC 4 cut(s) 238, 647, 666, 712
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 738
ScrFI CCNGG 3 cut(s) 550, 717, 836
SduI GDGCHC 1 cut(s) 298
SfcI CTRYAG 2 cut(s) 252, 614
Sse9I AATT 4 cut(s) 422, 456, 600, 699
SsiI CCGC 3 cut(s) 331, 644, 801
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 3 cut(s) 548, 715, 834
TaaI ACNGT 3 cut(s) 157, 274, 675
TaiI ACGT 2 cut(s) 468, 790
TaqI TCGA 2 cut(s) 54, 106
TasI AATT 4 cut(s) 422, 456, 600, 699
Tru1I TTAA 3 cut(s) 63, 656, 708
Tru9I TTAA 3 cut(s) 63, 656, 708
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 4 cut(s) 97, 128, 377, 613
Tsp45I GTSAC 1 cut(s) 268
TspGWI ACGGA 1 cut(s) 12
Van91I CCANNNNNTGG 1 cut(s) 157
VneI GTGCAC 1 cut(s) 294
XapI RAATTY 2 cut(s) 422, 699
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.