RLG00000020417

plastid-lipid-associated protein 10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008453
Physical Location & Seq
Reverse (-)
64771283 .. 64773990
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020417

Sequence Viewer

Length: 843 bp
ATGGACCTGGCTTTGGCGTCTCCGTTGTTCCCTTCAAATGTAACAAGAGGTGTCGATAAGATTAAGCCTTTTAGCTTAAGGTTTGCCACCCGAAAGGTGCCTGCTCGAAAATTGTTTTCTTGTTTGACAGCAGTTGCTACCCAAACACCCCAGACAGTGGAGTTTGATGTAGAGAGCAAGAAATATGAGCTGTTGAGAGCTGTCCAAGACACAAAAAGGGGCCTTGTTACAACCGACGATCAACGCTCTTCTATAGAGGAGGCTCTGGTGACTGTGGAGGGATATAACAAGGGTGCACCTTTAGACTTGGTGAAGTTGGATGGGACATGGCGGTTGCAATATACTTCTGCTTCTGATGTTCTCATTCTTCTGGAAGCAGCTGAAAGGGTATCTTTCTTTCAGGTGGGGCAGATATTTCAAAAATTTGAATGCAAAGACAAATCCAACGGCGGTATAATCCGTAATGTTGTCAGATGGAGTGTTCCACCATTGTTAGAGGAAGAAGACGGTGCTACTCTTCTAGTTTCTGCCAAGTTTTCTGTTGTTTCCGTGCGTAACATCTATCTTCAGTTTGAAGAGATTAGTGTTCAAAATATAAAAATTGGTGAACAGCTGCAGGCTCTTATAGCTCCAGCATTACTGCCGAGGTCATTTTTGAGTTTACAGATCTTACAGTTCCTCCGCACTTTCAAAGCCCAAATTCCTGTTAGTGATCCAGGAACAGGAAGGCAATCCGTAGGAGGACTCTATTACCTTTCTTACTTGGATGCTAATATGCTTTTGGGGCGTGCGGTTGGTGGCGGAGGAGTTTTTGTTTTCACTAAAGCTCAACCCCTGGAGTGA

Protein Analysis

281

Amino Acids

30.95

Weight (kDa)

8.77

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 60 - 273 3.5e-23 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 97
AccB7I CCANNNNNTGG 1 cut(s) 157
AciI CCGC 5 cut(s) 331, 450, 682, 791, 801
AclWI GGATC 1 cut(s) 707
AcsI RAATTY 2 cut(s) 422, 699
AcuI CTGAAG 1 cut(s) 551
AcyI GRCGYC 1 cut(s) 17
AfiI CCNNNNNNNGG 3 cut(s) 13, 157, 722
AflII CTTAAG 1 cut(s) 76
AgsI TTSAA 6 cut(s) 36, 419, 428, 575, 590, 691
AjnI CCWGG 3 cut(s) 6, 715, 834
AluBI AGCT 7 cut(s) 75, 190, 200, 380, 613, 629, 827
AluI AGCT 7 cut(s) 75, 190, 200, 380, 613, 629, 827
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 24
Alw44I GTGCAC 1 cut(s) 294
AlwI GGATC 1 cut(s) 707
AoxI GGCC 1 cut(s) 220
ApaLI GTGCAC 1 cut(s) 294
ApeKI GCWGC 2 cut(s) 377, 613
ApoI RAATTY 2 cut(s) 422, 699
AspS9I GGNCC 2 cut(s) 4, 220
AsuHPI GGTGA 3 cut(s) 280, 322, 617
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 2 cut(s) 389, 600
BccI CCATC 2 cut(s) 314, 468
BceAI ACGGC 1 cut(s) 463
BciT130I CCWGG 3 cut(s) 8, 717, 836
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 2 cut(s) 252, 614
BfrI CTTAAG 1 cut(s) 76
BglII AGATCT 1 cut(s) 666
BisI GCNGC 2 cut(s) 378, 614
BlsI GCNGC 2 cut(s) 379, 615
Bme1390I CCNGG 3 cut(s) 8, 717, 836
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 220
BmiI GGNNCC 2 cut(s) 99, 221
BmrFI CCNGG 3 cut(s) 8, 717, 836
BmsI GCATC 1 cut(s) 757
BpiI GAAGAC 1 cut(s) 510
BpmI CTGGAG 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 644, 834
BsaXI ACNNNNNCTCC 4 cut(s) 663, 693, 798, 828
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 157, 722
BseBI CCWGG 3 cut(s) 8, 717, 836
BseDI CCNNGG 2 cut(s) 644, 834
BseGI GGATG 2 cut(s) 325, 772
BseLI CCNNNNNNNGG 3 cut(s) 13, 157, 722
BseRI GAGGAG 2 cut(s) 272, 819
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 2 cut(s) 389, 600
BshFI GGCC 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 298
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 3 cut(s) 13, 157, 722
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 337
BsmI GAATGC 1 cut(s) 434
BsnI GGCC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 3 cut(s) 238, 666, 712
BspACI CCGC 5 cut(s) 331, 450, 682, 791, 801
BspANI GGCC 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 99, 221
BspMAI CTGCAG 1 cut(s) 618
BspPI GGATC 1 cut(s) 707
BspQI GCTCTTC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 97
BspTI CTTAAG 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 644, 834
BssMI GATC 3 cut(s) 238, 666, 712
BssNI GRCGYC 1 cut(s) 17
Bst2UI CCWGG 3 cut(s) 8, 717, 836
Bst4CI ACNGT 4 cut(s) 157, 274, 509, 675
Bst6I CTCTTC 3 cut(s) 253, 522, 570
BstACI GRCGYC 1 cut(s) 17
BstAFI CTTAAG 1 cut(s) 76
BstC8I GCNNGC 3 cut(s) 102, 618, 789
BstF5I GGATG 2 cut(s) 325, 772
BstKTI GATC 3 cut(s) 241, 669, 715
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 238, 666, 712
BstMWI GCNNNNNNNGC 2 cut(s) 626, 784
BstNI CCWGG 3 cut(s) 8, 717, 836
BstSCI CCNGG 3 cut(s) 6, 715, 834
BstSFI CTRYAG 2 cut(s) 252, 614
BstSLI GKGCMC 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 389, 600
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 666
BstYI RGATCY 1 cut(s) 666
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 2 cut(s) 325, 772
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 3 cut(s) 102, 618, 789
Cfr13I GGNCC 2 cut(s) 4, 220
CseI GACGC 1 cut(s) 6
CviAII CATG 1 cut(s) 327
DpnI GATC 3 cut(s) 240, 668, 714
DpnII GATC 3 cut(s) 238, 666, 712
Eam1104I CTCTTC 3 cut(s) 253, 522, 570
EarI CTCTTC 3 cut(s) 253, 522, 570
EciI GGCGGA 1 cut(s) 816
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 551
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 3 cut(s) 6, 715, 834
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 1 cut(s) 330
FaiI YATR 9 cut(s) 186, 254, 285, 328, 342, 455, 596, 626, 776
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FaqI GGGAC 1 cut(s) 337
FatI CATG 1 cut(s) 326
Fnu4HI GCNGC 2 cut(s) 378, 614
FokI GGATG 2 cut(s) 332, 779
Fsp4HI GCNGC 2 cut(s) 378, 614
FspBI CTAG 1 cut(s) 521
GluI GCNGC 2 cut(s) 378, 614
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 1 cut(s) 222
HgaI GACGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 1 cut(s) 330
HinfI GANTC 1 cut(s) 744
HphI GGTGA 3 cut(s) 280, 322, 617
Hpy166II GTNNAC 3 cut(s) 296, 608, 662
Hpy188I TCNGA 2 cut(s) 355, 473
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 3 cut(s) 296, 608, 662
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 42, 720
HpyCH4III ACNGT 4 cut(s) 157, 274, 509, 675
HpyCH4V TGCA 4 cut(s) 296, 337, 432, 616
HpyF10VI GCNNNNNNNGC 2 cut(s) 626, 784
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 330
Kzo9I GATC 3 cut(s) 238, 666, 712
LguI GCTCTTC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 634
Lsp1109I GCAGC 2 cut(s) 389, 600
LweI GCATC 1 cut(s) 757
MaeI CTAG 1 cut(s) 521
MaeIII GTNAC 4 cut(s) 40, 226, 268, 554
MalI GATC 3 cut(s) 240, 668, 714
MboI GATC 3 cut(s) 238, 666, 712
MboII GAAGA 7 cut(s) 240, 359, 509, 512, 515, 557, 587
MflI RGATCY 1 cut(s) 666
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 4 cut(s) 110, 422, 600, 699
MlyI GAGTC 1 cut(s) 738
MmeI TCCRAC 2 cut(s) 297, 468
MnlI CCTC 9 cut(s) 41, 250, 253, 271, 490, 639, 689, 734, 797
MseI TTAA 2 cut(s) 63, 77
MspA1I CMGCKG 2 cut(s) 380, 613
MspCI CTTAAG 1 cut(s) 76
MspR9I CCNGG 3 cut(s) 8, 717, 836
Mva1269I GAATGC 1 cut(s) 434
MvaI CCWGG 3 cut(s) 8, 717, 836
MwoI GCNNNNNNNGC 2 cut(s) 626, 784
NdeII GATC 3 cut(s) 238, 666, 712
NlaIII CATG 1 cut(s) 330
NlaIV GGNNCC 2 cut(s) 99, 221
NmeAIII GCCGAG 1 cut(s) 669
NmuCI GTSAC 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 253
PctI GAATGC 1 cut(s) 434
PflMI CCANNNNNTGG 1 cut(s) 157
PfoI TCCNGGA 1 cut(s) 715
PkrI GCNGC 2 cut(s) 379, 615
PleI GAGTC 1 cut(s) 738
PpsI GAGTC 1 cut(s) 738
Psp6I CCWGG 3 cut(s) 6, 715, 834
PspGI CCWGG 3 cut(s) 6, 715, 834
PspN4I GGNNCC 2 cut(s) 99, 221
PspPI GGNCC 2 cut(s) 4, 220
PstI CTGCAG 1 cut(s) 618
PsuI RGATCY 1 cut(s) 666
PvuII CAGCTG 2 cut(s) 380, 613
SapI GCTCTTC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 63, 77
SatI GCNGC 2 cut(s) 378, 614
Sau3AI GATC 3 cut(s) 238, 666, 712
Sau96I GGNCC 2 cut(s) 4, 220
SchI GAGTC 1 cut(s) 738
ScrFI CCNGG 3 cut(s) 8, 717, 836
SduI GDGCHC 1 cut(s) 298
SfaNI GCATC 1 cut(s) 757
SfcI CTRYAG 2 cut(s) 252, 614
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 4 cut(s) 110, 422, 600, 699
SsiI CCGC 5 cut(s) 331, 450, 682, 791, 801
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 3 cut(s) 6, 715, 834
TaaI ACNGT 4 cut(s) 157, 274, 509, 675
TaqI TCGA 2 cut(s) 54, 106
TasI AATT 4 cut(s) 110, 422, 600, 699
Tru1I TTAA 2 cut(s) 63, 77
Tru9I TTAA 2 cut(s) 63, 77
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 2 cut(s) 377, 613
Tsp45I GTSAC 1 cut(s) 268
TspGWI ACGGA 4 cut(s) 12, 449, 538, 724
TspRI CASTG 1 cut(s) 162
Van91I CCANNNNNTGG 1 cut(s) 157
Vha464I CTTAAG 1 cut(s) 76
VneI GTGCAC 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 422, 699
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.