Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008453

Physical Location & Seq

Genomic Coordinates Reverse (-)

67365398 .. 67369048

Gene Structure 3651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51893

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGACCTGGCTTTGGCGTCTCCGTTGTTCCCTTCAAATGTAACAAGAGGTGTCGATAAGATTAAGCCTTTTAGCTCAATGTTTGCCACCCGAAAGGTGCCTGCTCGAAAATTGTTTCCTTGTTTGGCAGCAGTTGCTACCCAAACACCCCAGACAGTGGAGTTTGATGTAGAGAGCAAGAAATATGAGCTGTTGAGAGCTGTCCAAGACACAAAAAGGGGCCTTGTTACAACCGACGATCAACGCTCTTCTATAGAGGAGGCTCTGGTGACTGTGGAGGGATATAACAAGGGTGCACCTTTAGACTTGGTGAAGTTGGATGGGACATGGCGGTTGCAATATACTTCTGCCCCTGATGTCCTCATTCTTCTGGAAGCAGCTGAAAGGATATCTTTCTTTCAGGTGGGGCAGATATTTCAAAAATTTGAATGCAAAGACCAATCCAACGGCGGTATAATCCGTAATGTTGTCAAATGGAGTGTTCCACCATTGTTAGAGGAAGAAGACGGTGCTACTCTTCTAGTTTCTGCCAAGTTTTCTGTTGTTTCCGTGCGTAACATCTATCTTCAGTTTGAAGAGATTAGTGTTCAAAATATAAAAATTGGTGAACAGCTGCAGGCTCTTATAGCTCCAGCATTACTGCCGAGGTCATTTTTGAGTTTACAGATCTTACAGTTCCTCCGCACTTTCAAAGCCCAAATTCCTGTTAGTGATCCAGGAACAGGAAGGCAATCCGTAGGAGGACTCTATTACCTTTCTTACTTGGATGCTAATATGCTTTTGGGGCGTGCGGTTGGTGGCGGAGGAGTTTTTGTTTTCACTAAAGCTCAACCCCTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

280

Amino Acids

30.88

Weight (kDa)

7.66

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	60 - 273	4.9e-23	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46910
fragaria_vesca	FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990
malus_domestica	MD17G1162500.v1.1
prunus_persica	Prupe.3G022800_v2.0.a1 Prupe.3G022800_v2.0.a1 Prupe.3G022800_v2.0.a1
pyrus_communis	pycom17g15560
rosa_chinensis	RchiOBHm_Chr2g0149531
rosa_laevigata	RLG00000020417
rosa_multiflora	Rmu_sc0006867.1_g000012 Rmu_sc0008619.1_g000008
rosa_roxburghii	Rroxscaffold_2G00098040
rosa_rugosa	Rorug02G0412100
rosa_samantha	Rh2AG472500 Rh2BG484500 Rh2CG458400 Rh2DG493700
rosa_wichuraiana	Rw2G038510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AccB7I	CCANNNNNTGG	1 cut(s)	157
AciI	CCGC	5 cut(s)	331, 450, 682, 791, 801
AclWI	GGATC	1 cut(s)	707
AcsI	RAATTY	2 cut(s)	422, 699
AcuI	CTGAAG	1 cut(s)	551
AcyI	GRCGYC	1 cut(s)	17
AfiI	CCNNNNNNNGG	3 cut(s)	13, 157, 722
AgsI	TTSAA	6 cut(s)	36, 419, 428, 575, 590, 691
AjnI	CCWGG	3 cut(s)	6, 715, 834
AluBI	AGCT	7 cut(s)	75, 190, 200, 380, 613, 629, 827
AluI	AGCT	7 cut(s)	75, 190, 200, 380, 613, 629, 827
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	707
AoxI	GGCC	1 cut(s)	220
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	128, 377, 613
ApoI	RAATTY	2 cut(s)	422, 699
AspS9I	GGNCC	2 cut(s)	4, 220
AsuHPI	GGTGA	3 cut(s)	280, 322, 617
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	3 cut(s)	140, 389, 600
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	3 cut(s)	8, 717, 836
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	2 cut(s)	252, 614
BglII	AGATCT	1 cut(s)	666
BisI	GCNGC	3 cut(s)	129, 378, 614
BlsI	GCNGC	3 cut(s)	130, 379, 615
Bme1390I	CCNGG	3 cut(s)	8, 717, 836
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 220
BmiI	GGNNCC	2 cut(s)	99, 221
BmrFI	CCNGG	3 cut(s)	8, 717, 836
BmsI	GCATC	1 cut(s)	757
BpiI	GAAGAC	1 cut(s)	510
BpmI	CTGGAG	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	644, 834
BsaXI	ACNNNNNCTCC	4 cut(s)	663, 693, 798, 828
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 157, 722
BseBI	CCWGG	3 cut(s)	8, 717, 836
BseDI	CCNNGG	2 cut(s)	644, 834
BseGI	GGATG	2 cut(s)	325, 772
BseLI	CCNNNNNNNGG	3 cut(s)	13, 157, 722
BseRI	GAGGAG	2 cut(s)	272, 819
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	140, 389, 600
BshFI	GGCC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	3 cut(s)	13, 157, 722
BsmAI	GTCTC	1 cut(s)	24
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	3 cut(s)	238, 666, 712
BspACI	CCGC	5 cut(s)	331, 450, 682, 791, 801
BspANI	GGCC	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	99, 221
BspMAI	CTGCAG	1 cut(s)	618
BspPI	GGATC	1 cut(s)	707
BspQI	GCTCTTC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	644, 834
BssMI	GATC	3 cut(s)	238, 666, 712
BssNI	GRCGYC	1 cut(s)	17
Bst2UI	CCWGG	3 cut(s)	8, 717, 836
Bst4CI	ACNGT	4 cut(s)	157, 274, 509, 675
Bst6I	CTCTTC	3 cut(s)	253, 522, 570
BstACI	GRCGYC	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	3 cut(s)	102, 618, 789
BstF5I	GGATG	2 cut(s)	325, 772
BstKTI	GATC	3 cut(s)	241, 669, 715
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	3 cut(s)	238, 666, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 626, 784
BstNI	CCWGG	3 cut(s)	8, 717, 836
BstSCI	CCNGG	3 cut(s)	6, 715, 834
BstSFI	CTRYAG	2 cut(s)	252, 614
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	3 cut(s)	140, 389, 600
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	666
BstYI	RGATCY	1 cut(s)	666
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	325, 772
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	3 cut(s)	102, 618, 789
Cfr13I	GGNCC	2 cut(s)	4, 220
CseI	GACGC	1 cut(s)	6
CviAII	CATG	1 cut(s)	327
DpnI	GATC	3 cut(s)	240, 668, 714
DpnII	GATC	3 cut(s)	238, 666, 712
Eam1104I	CTCTTC	3 cut(s)	253, 522, 570
EarI	CTCTTC	3 cut(s)	253, 522, 570
EciI	GGCGGA	1 cut(s)	816
Eco32I	GATATC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	3 cut(s)	6, 715, 834
EcoRV	GATATC	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	1 cut(s)	330
FaiI	YATR	9 cut(s)	186, 254, 285, 328, 342, 455, 596, 626, 776
FalI	AAGNNNNNCTT	2 cut(s)	376, 408
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	1 cut(s)	326
Fnu4HI	GCNGC	3 cut(s)	129, 378, 614
FokI	GGATG	2 cut(s)	332, 779
Fsp4HI	GCNGC	3 cut(s)	129, 378, 614
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	3 cut(s)	129, 378, 614
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	1 cut(s)	222
HgaI	GACGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	330
HinfI	GANTC	1 cut(s)	744
HphI	GGTGA	3 cut(s)	280, 322, 617
Hpy166II	GTNNAC	3 cut(s)	296, 608, 662
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	3 cut(s)	296, 608, 662
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	42, 720
HpyCH4III	ACNGT	4 cut(s)	157, 274, 509, 675
HpyCH4V	TGCA	4 cut(s)	296, 337, 432, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 626, 784
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	238, 666, 712
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	634
Lsp1109I	GCAGC	3 cut(s)	140, 389, 600
LweI	GCATC	1 cut(s)	757
MaeI	CTAG	1 cut(s)	521
MaeIII	GTNAC	4 cut(s)	40, 226, 268, 554
MalI	GATC	3 cut(s)	240, 668, 714
MboI	GATC	3 cut(s)	238, 666, 712
MboII	GAAGA	7 cut(s)	240, 359, 509, 512, 515, 557, 587
MflI	RGATCY	1 cut(s)	666
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	4 cut(s)	110, 422, 600, 699
MlyI	GAGTC	1 cut(s)	738
MmeI	TCCRAC	2 cut(s)	297, 468
MseI	TTAA	1 cut(s)	63
MspA1I	CMGCKG	2 cut(s)	380, 613
MspR9I	CCNGG	3 cut(s)	8, 717, 836
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	3 cut(s)	8, 717, 836
MwoI	GCNNNNNNNGC	3 cut(s)	134, 626, 784
NdeII	GATC	3 cut(s)	238, 666, 712
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	2 cut(s)	99, 221
NmeAIII	GCCGAG	1 cut(s)	669
NmuCI	GTSAC	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	253
PctI	GAATGC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	157
PfoI	TCCNGGA	1 cut(s)	715
PkrI	GCNGC	3 cut(s)	130, 379, 615
PleI	GAGTC	1 cut(s)	738
PpsI	GAGTC	1 cut(s)	738
Psp6I	CCWGG	3 cut(s)	6, 715, 834
PspGI	CCWGG	3 cut(s)	6, 715, 834
PspN4I	GGNNCC	2 cut(s)	99, 221
PspPI	GGNCC	2 cut(s)	4, 220
PstI	CTGCAG	1 cut(s)	618
PsuI	RGATCY	1 cut(s)	666
PvuII	CAGCTG	2 cut(s)	380, 613
SapI	GCTCTTC	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	3 cut(s)	129, 378, 614
Sau3AI	GATC	3 cut(s)	238, 666, 712
Sau96I	GGNCC	2 cut(s)	4, 220
SchI	GAGTC	1 cut(s)	738
ScrFI	CCNGG	3 cut(s)	8, 717, 836
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	1 cut(s)	757
SfcI	CTRYAG	2 cut(s)	252, 614
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	4 cut(s)	110, 422, 600, 699
SsiI	CCGC	5 cut(s)	331, 450, 682, 791, 801
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	3 cut(s)	6, 715, 834
TaaI	ACNGT	4 cut(s)	157, 274, 509, 675
TaqI	TCGA	2 cut(s)	54, 106
TasI	AATT	4 cut(s)	110, 422, 600, 699
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	3 cut(s)	128, 377, 613
Tsp45I	GTSAC	1 cut(s)	268
TspGWI	ACGGA	4 cut(s)	12, 449, 538, 724
TspRI	CASTG	1 cut(s)	162
Van91I	CCANNNNNTGG	1 cut(s)	157
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	422, 699
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.