AT2G47115

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013474
Physical Location & Seq
Reverse (-)
19345350 .. 19346921
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47115.1

Sequence Viewer

Length: 903 bp
ATGGCATTGATCGTTTATTGGTATGACTTCATCTGCTTTGCGATAGTTGCGGCTGCAATCGTCACGTCCTTGTGGTTTCTATCCCGCAGAGACAGAGGCTGCGTAGTAATTGATGATACGTCCCACGATAGCTTGTTACCACTTTATAGATCGAACAACCGTGGTTCGGCTCGGTTATGGGCCAGTTGCTGGACAAGATTACATCCCGGCTGGCTACTCTTTACTCGTTCCACCTCTTTTCTCTCCATGGCTGCTTTATTGGCTTGGGATGTCATCAAGTGGGACGCAAGCATCTTCGTCTATTACACAGAATGGACCTTCATGCTTGTGATCATCTACTTTGCGATGGGTATTGTAGCTTCAGTATATGGTTGTTTGATACATTTAAAGGAGCTAACACTTGAAACTGATGAAGATGTGGTAGTAGAAAAGGTCGGAGATGAGTTCCGGCGAAGATTAGAGGTTTGTGGTTGTTTCATGCAGACAATTTTTCAGACAAGTGCAGGGGCTGTAGTGCTGACGGACATTGTGTTTTGGTTAGTTATAGTTCCTTTCCTATCGACTACTCGCTTTGGGTTAAACACGTTGACGATCTGCATGCACACGGCAAATGCAGGCTTCCTCCTGCTTGAAACACTCCTCAATAGCCTTCCATTCCCTTGGTTTCGAATGGGATATTTCGTGCTATGGAGTTGTCTCTATGTTATATTCCAATGGATCATCCACGCATGTGGCTTCACTTGGTGGCCATATCCGTTCCTCGAGCTAGACAAGCCATGGGCTCCGATATGGTACCTATGCATGGCAATTGTTCATATCCCTTGCTATGGAGCTTATGCCGCAATAGTAAAAGCCAAGAACTCCTGTTTCCCATATCTATTCCCAAATGCTCTTGTAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

34.64

Weight (kDa)

6.29

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47115
fragaria_vesca FvH4_1g26530 FvH4_1g26530
malus_domestica MD09G1288800.v1.1 MD17G1280700.v1.1
prunus_persica Prupe.3G004800_v2.0.a1
pyrus_communis pycom09g19580 pycom17g27850
rosa_chinensis RchiOBHm_Chr3g0486611
rosa_laevigata RLG00000023073
rosa_multiflora Rmu_sc0001508.1_g000003
rosa_roxburghii Rroxscaffold_6G00395770
rosa_rugosa Rorug03G0225600 Rorug03G0225700
rosa_samantha Rh3AG275500 Rh3CG309900 Rh3DG306600
rosa_wichuraiana Rw3G024550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 792
AccB1I GGYRCC 1 cut(s) 792
AccB7I CCANNNNNTGG 1 cut(s) 189
AciI CCGC 3 cut(s) 50, 85, 840
AclWI GGATC 1 cut(s) 725
AcoI YGGCCR 1 cut(s) 746
AcuI CTGAAG 1 cut(s) 345
AdeI CACNNNGTG 1 cut(s) 744
AfaI GTAC 1 cut(s) 794
AfiI CCNNNNNNNGG 4 cut(s) 166, 189, 802, 827
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 2 cut(s) 404, 632
AjiI CACGTC 1 cut(s) 66
AleI CACNNNNGTG 1 cut(s) 729
AluBI AGCT 5 cut(s) 132, 359, 394, 766, 833
AluI AGCT 5 cut(s) 132, 359, 394, 766, 833
Alw26I GTCTC 2 cut(s) 84, 701
AlwI GGATC 1 cut(s) 725
AlwNI CAGNNNCTG 3 cut(s) 99, 189, 509
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 2 cut(s) 180, 746
ApeKI GCWGC 3 cut(s) 53, 99, 251
Asp718I GGTACC 1 cut(s) 792
AspS9I GGNCC 2 cut(s) 180, 315
AsuC2I CCSGG 1 cut(s) 207
AsuII TTCGAA 1 cut(s) 667
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 1 cut(s) 315
BalI TGGCCA 1 cut(s) 748
BanI GGYRCC 1 cut(s) 792
BanII GRGCYC 1 cut(s) 784
BarI GAAGNNNNNNTAC 2 cut(s) 343, 375
BbvI GCAGC 3 cut(s) 40, 86, 238
BccI CCATC 1 cut(s) 340
BceAI ACGGC 1 cut(s) 621
BcgI CGANNNNNNTGC 2 cut(s) 580, 614
BclI TGATCA 1 cut(s) 330
BcnI CCSGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 84, 701
BfaI CTAG 1 cut(s) 767
BfmI CTRYAG 1 cut(s) 510
BisI GCNGC 5 cut(s) 51, 54, 100, 252, 840
BlsI GCNGC 5 cut(s) 52, 55, 101, 253, 841
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 315
BmeT110I CYCGRG 1 cut(s) 761
BmgBI CACGTC 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 180, 315
BmiI GGNNCC 2 cut(s) 783, 794
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 667
BpuMI CCSGG 1 cut(s) 207
BsaJI CCNNGG 4 cut(s) 160, 246, 659, 776
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 189, 802, 827
Bse1I ACTGG 1 cut(s) 183
BseDI CCNNGG 4 cut(s) 160, 246, 659, 776
BseGI GGATG 3 cut(s) 202, 274, 720
BseLI CCNNNNNNNGG 4 cut(s) 166, 189, 802, 827
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 629
BseXI GCAGC 3 cut(s) 40, 86, 238
BsgI GTGCAG 1 cut(s) 522
BshFI GGCC 2 cut(s) 182, 748
BshNI GGYRCC 1 cut(s) 792
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 2 cut(s) 207, 448
BslFI GGGAC 2 cut(s) 106, 296
BslI CCNNNNNNNGG 4 cut(s) 166, 189, 802, 827
BsmAI GTCTC 2 cut(s) 84, 701
BsmFI GGGAC 2 cut(s) 106, 296
BsnI GGCC 2 cut(s) 182, 748
BsoBI CYCGRG 1 cut(s) 761
Bsp119I TTCGAA 1 cut(s) 667
Bsp1286I GDGCHC 1 cut(s) 784
Bsp143I GATC 5 cut(s) 9, 149, 330, 591, 717
Bsp19I CCATGG 2 cut(s) 246, 776
BspACI CCGC 3 cut(s) 50, 85, 840
BspANI GGCC 2 cut(s) 182, 748
BspLI GGNNCC 2 cut(s) 783, 794
BspPI GGATC 1 cut(s) 725
BspT104I TTCGAA 1 cut(s) 667
BspT107I GGYRCC 1 cut(s) 792
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 4 cut(s) 160, 246, 659, 776
BssMI GATC 5 cut(s) 9, 149, 330, 591, 717
BssT1I CCWWGG 3 cut(s) 246, 659, 776
Bst4CI ACNGT 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 667
BstC8I GCNNGC 4 cut(s) 212, 289, 599, 616
BstDEI CTNAG 1 cut(s) 900
BstDSI CCRYGG 3 cut(s) 160, 246, 776
BstF5I GGATG 3 cut(s) 202, 274, 720
BstKTI GATC 5 cut(s) 12, 152, 333, 594, 720
BstMAI GTCTC 2 cut(s) 84, 701
BstMBI GATC 5 cut(s) 9, 149, 330, 591, 717
BstMWI GCNNNNNNNGC 4 cut(s) 47, 260, 772, 839
BstNSI RCATGY 2 cut(s) 601, 732
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 40, 86, 238
BstXI CCANNNNNNTGG 2 cut(s) 660, 731
BsuRI GGCC 2 cut(s) 182, 748
BtgI CCRYGG 3 cut(s) 160, 246, 776
BtgZI GCGATG 1 cut(s) 359
BtrI CACGTC 1 cut(s) 66
BtsCI GGATG 3 cut(s) 202, 274, 720
Cac8I GCNNGC 4 cut(s) 212, 289, 599, 616
CaiI CAGNNNCTG 3 cut(s) 99, 189, 509
Cfr13I GGNCC 2 cut(s) 180, 315
CseI GACGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 793
CviAII CATG 7 cut(s) 247, 322, 478, 598, 729, 777, 802
CviQI GTAC 1 cut(s) 793
DdeI CTNAG 1 cut(s) 900
DpnI GATC 5 cut(s) 11, 151, 332, 593, 719
DpnII GATC 5 cut(s) 9, 149, 330, 591, 717
DraI TTTAAA 1 cut(s) 387
DraIII CACNNNGTG 1 cut(s) 744
EaeI YGGCCR 1 cut(s) 746
Eco130I CCWWGG 3 cut(s) 246, 659, 776
Eco24I GRGCYC 1 cut(s) 784
Eco47I GGWCC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 761
EcoT14I CCWWGG 3 cut(s) 246, 659, 776
EcoT22I ATGCAT 1 cut(s) 803
EcoT38I GRGCYC 1 cut(s) 784
ErhI CCWWGG 3 cut(s) 246, 659, 776
FaeI CATG 7 cut(s) 250, 325, 481, 601, 732, 780, 805
FaqI GGGAC 2 cut(s) 106, 296
FatI CATG 7 cut(s) 246, 321, 477, 597, 728, 776, 801
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 1 cut(s) 330
Fnu4HI GCNGC 5 cut(s) 51, 54, 100, 252, 840
FokI GGATG 3 cut(s) 189, 281, 707
FriOI GRGCYC 1 cut(s) 784
Fsp4HI GCNGC 5 cut(s) 51, 54, 100, 252, 840
FspBI CTAG 1 cut(s) 767
GluI GCNGC 5 cut(s) 51, 54, 100, 252, 840
HaeIII GGCC 2 cut(s) 182, 748
HapII CCGG 2 cut(s) 207, 448
HgaI GACGC 1 cut(s) 293
Hin1II CATG 7 cut(s) 250, 325, 481, 601, 732, 780, 805
HincII GTYRAC 1 cut(s) 588
HindII GTYRAC 1 cut(s) 588
HpaII CCGG 2 cut(s) 207, 448
Hpy166II GTNNAC 1 cut(s) 588
Hpy188I TCNGA 3 cut(s) 437, 495, 786
Hpy8I GTNNAC 1 cut(s) 588
HpyAV CCTTC 2 cut(s) 328, 659
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 3 cut(s) 65, 119, 584
HpyCH4V TGCA 7 cut(s) 56, 481, 503, 597, 601, 614, 801
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 260, 772, 839
HpyF3I CTNAG 1 cut(s) 900
HpySE526I ACGT 3 cut(s) 65, 119, 584
Hsp92II CATG 7 cut(s) 250, 325, 481, 601, 732, 780, 805
KpnI GGTACC 1 cut(s) 796
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 5 cut(s) 9, 149, 330, 591, 717
LmnI GCTCC 3 cut(s) 391, 787, 830
LpnPI CCDG 9 cut(s) 175, 196, 196, 220, 461, 489, 600, 638, 877
Lsp1109I GCAGC 3 cut(s) 40, 86, 238
LweI GCATC 1 cut(s) 300
MaeI CTAG 1 cut(s) 767
MaeII ACGT 3 cut(s) 65, 119, 584
MaeIII GTNAC 3 cut(s) 61, 135, 895
MalI GATC 5 cut(s) 11, 151, 332, 593, 719
MboI GATC 5 cut(s) 9, 149, 330, 591, 717
MboII GAAGA 3 cut(s) 286, 425, 465
MfeI CAATTG 1 cut(s) 807
MhlI GDGCHC 1 cut(s) 784
MlsI TGGCCA 1 cut(s) 748
MluCI AATT 3 cut(s) 108, 486, 807
MluNI TGGCCA 1 cut(s) 748
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 6 cut(s) 89, 244, 454, 632, 650, 770
Mox20I TGGCCA 1 cut(s) 748
Mph1103I ATGCAT 1 cut(s) 803
MscI TGGCCA 1 cut(s) 748
MseI TTAA 2 cut(s) 386, 578
MslI CAYNNNNRTG 2 cut(s) 326, 729
Msp20I TGGCCA 1 cut(s) 748
MspI CCGG 2 cut(s) 207, 448
MspR9I CCNGG 1 cut(s) 207
MunI CAATTG 1 cut(s) 807
MwoI GCNNNNNNNGC 4 cut(s) 47, 260, 772, 839
NciI CCSGG 1 cut(s) 207
NcoI CCATGG 2 cut(s) 246, 776
NdeII GATC 5 cut(s) 9, 149, 330, 591, 717
NlaIII CATG 7 cut(s) 250, 325, 481, 601, 732, 780, 805
NlaIV GGNNCC 2 cut(s) 783, 794
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 803
NspI RCATGY 2 cut(s) 601, 732
NspV TTCGAA 1 cut(s) 667
OliI CACNNNNGTG 1 cut(s) 729
PaeI GCATGC 1 cut(s) 601
PaeR7I CTCGAG 1 cut(s) 761
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 5 cut(s) 52, 55, 101, 253, 841
PspN4I GGNNCC 2 cut(s) 783, 794
PspPI GGNCC 2 cut(s) 180, 315
PspXI VCTCGAGB 1 cut(s) 761
PstNI CAGNNNCTG 3 cut(s) 99, 189, 509
RsaI GTAC 1 cut(s) 794
RsaNI GTAC 1 cut(s) 793
RseI CAYNNNNRTG 2 cut(s) 326, 729
SaqAI TTAA 2 cut(s) 386, 578
SatI GCNGC 5 cut(s) 51, 54, 100, 252, 840
Sau3AI GATC 5 cut(s) 9, 149, 330, 591, 717
Sau96I GGNCC 2 cut(s) 180, 315
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 784
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 510
Sfr274I CTCGAG 1 cut(s) 761
SfuI TTCGAA 1 cut(s) 667
SinI GGWCC 1 cut(s) 315
SlaI CTCGAG 1 cut(s) 761
SmiMI CAYNNNNRTG 2 cut(s) 326, 729
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
SphI GCATGC 1 cut(s) 601
Sse9I AATT 3 cut(s) 108, 486, 807
SsiI CCGC 3 cut(s) 50, 85, 840
SspMI CTAG 1 cut(s) 767
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 3 cut(s) 246, 659, 776
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 3 cut(s) 68, 122, 587
TaqI TCGA 4 cut(s) 152, 560, 667, 762
TasI AATT 3 cut(s) 108, 486, 807
TauI GCSGC 2 cut(s) 53, 842
Tru1I TTAA 2 cut(s) 386, 578
Tru9I TTAA 2 cut(s) 386, 578
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 3 cut(s) 53, 99, 251
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 5 cut(s) 19, 310, 426, 466, 803
TspGWI ACGGA 2 cut(s) 536, 744
Van91I CCANNNNNTGG 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 315
XceI RCATGY 2 cut(s) 601, 732
XhoI CTCGAG 1 cut(s) 761
XspI CTAG 1 cut(s) 767
Zsp2I ATGCAT 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.