Rw3G024550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013474
Physical Location & Seq
Reverse (-)
31566671 .. 31569239
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024550.1

Sequence Viewer

Length: 972 bp
ATGGCACTCGTGGTTTACTGGTACGACTTCGTCTGCTTCGGCATTGTTGGCTTCTCCCTGGTTTGGGCTTTGTGGGTCATCTGGAGGAAGGAAGGAGCTTCGGAGAGAGTCGAAGACAGCACCGTGTTCGTGAGTGCATTGCCGAAGGGACATGTTAGTACTTCGCAGCTCTGGACTAGTTGCTGGAAAGGGCTTCACCCTGGTTGGCTCTTGACCATTCGGTTTGTGTCGTTTCTGGTCTTGGCTGGCTTCTTGGCTTGGGATGTTTTGGCCTGGGATGCTTCCATTTTCATTTACTACACCGAGTGGACTTTCACATTGGTTATGCTGTATTTTGGGTTGGGGACCATAGTGTCTGGTTATGGATGGTGGTTGTCCTCAAACAAAACCTTCTCTGCAAATGGGACAAGAAGAGATTTGGAAGAGAATAATGCAAGCATTAATACTTATAGGAAAAATGGAAATAGCGGAACCATCAAATTGCAAAGCCACTATGCTCAGGAGGAGATTCAACTCAGAGCAGGATTTTGGGGATATCTCATGCAAATTGCATTCCAGACTTGTGCAGGAGCAGTTGTGCTCACAGACATTGTCTTTTGGTGTGTCATCGTCCCATTCTTATCAACTTCTCACCTCGGCCTAAATATGTTGATGGGTTGCATGCATACTTTGAACGCGTTTTTTATTCTTCTGGACACCAGTCTTAATAGCCTTCCATTTCCTTGGTTCCGTCTTTCATATTTTGTTCTTTGGAGCTGCCTCTACGTCATCTTCCAATGGGTCATTCATGCCTTCGGTTTCCCATGGTGGCCATATCCGTTCCTCGAGCTTGATACACCATGGGCTACGTTGTGGTATTTTTGTATGGCCTTGATGCACATCCCTTGTTATGGGATTTTTGCGCTGATTATGAAAGCCAAGTATTCAATTTTCCCCAAATTGTTTCCTCACGCTTTCGTGAGGCCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

37.48

Weight (kDa)

7.59

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47115
fragaria_vesca FvH4_1g26530 FvH4_1g26530
malus_domestica MD09G1288800.v1.1 MD17G1280700.v1.1
prunus_persica Prupe.3G004800_v2.0.a1
pyrus_communis pycom09g19580 pycom17g27850
rosa_chinensis RchiOBHm_Chr3g0486611
rosa_laevigata RLG00000023073
rosa_multiflora Rmu_sc0001508.1_g000003
rosa_roxburghii Rroxscaffold_6G00395770
rosa_rugosa Rorug03G0225600 Rorug03G0225700
rosa_samantha Rh3AG275500 Rh3CG309900 Rh3DG306600
rosa_wichuraiana Rw3G024550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 352
AccII CGCG 1 cut(s) 677
AciI CCGC 1 cut(s) 468
AcoI YGGCCR 1 cut(s) 809
AdeI CACNNNGTG 1 cut(s) 306
AfaI GTAC 2 cut(s) 23, 160
AfiI CCNNNNNNNGG 3 cut(s) 63, 64, 890
AflIII ACRYGT 2 cut(s) 151, 675
AgsI TTSAA 3 cut(s) 512, 673, 927
AhlI ACTAGT 1 cut(s) 176
AjnI CCWGG 3 cut(s) 57, 199, 272
AjuI GAANNNNNNNTTGG 2 cut(s) 768, 800
AluBI AGCT 4 cut(s) 98, 169, 756, 829
AluI AGCT 4 cut(s) 98, 169, 756, 829
Alw21I GWGCWC 1 cut(s) 582
Ama87I CYCGRG 1 cut(s) 824
AoxI GGCC 5 cut(s) 270, 637, 809, 867, 962
ApeKI GCWGC 2 cut(s) 166, 756
AseI ATTAAT 1 cut(s) 441
AspLEI GCGC 1 cut(s) 904
AspS9I GGNCC 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 188, 623
AvaI CYCGRG 1 cut(s) 824
AvaII GGWCC 1 cut(s) 345
BalI TGGCCA 1 cut(s) 811
BauI CACGAG 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 2 cut(s) 178, 743
BccI CCATC 3 cut(s) 360, 482, 646
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciT130I CCWGG 3 cut(s) 59, 201, 274
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 2 cut(s) 177, 970
BisI GCNGC 2 cut(s) 167, 757
BlsI GCNGC 2 cut(s) 168, 758
BmcAI AGTACT 1 cut(s) 160
Bme1390I CCNGG 3 cut(s) 59, 201, 274
Bme18I GGWCC 1 cut(s) 345
BmeT110I CYCGRG 1 cut(s) 824
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 3 cut(s) 346, 472, 728
BmrFI CCNGG 3 cut(s) 59, 201, 274
BmsI GCATC 2 cut(s) 268, 864
BoxI GACNNNNGTC 1 cut(s) 699
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 498
BsaBI GATNNNNATC 1 cut(s) 878
BsaJI CCNNGG 7 cut(s) 57, 199, 273, 634, 722, 803, 839
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 64, 890
Bse1I ACTGG 2 cut(s) 23, 699
Bse3DI GCAATG 1 cut(s) 137
Bse8I GATNNNNATC 1 cut(s) 878
BseBI CCWGG 3 cut(s) 59, 201, 274
BseDI CCNNGG 7 cut(s) 57, 199, 273, 634, 722, 803, 839
BseGI GGATG 4 cut(s) 268, 283, 371, 879
BseJI GATNNNNATC 1 cut(s) 878
BseLI CCNNNNNNNGG 3 cut(s) 63, 64, 890
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 2 cut(s) 512, 529
BseNI ACTGG 2 cut(s) 23, 699
BseRI GAGGAG 1 cut(s) 518
BseXI GCAGC 2 cut(s) 178, 743
BsgI GTGCAG 1 cut(s) 585
Bsh1236I CGCG 1 cut(s) 677
BshFI GGCC 5 cut(s) 272, 639, 811, 869, 964
BsiHKAI GWGCWC 1 cut(s) 582
BsiHKCI CYCGRG 1 cut(s) 824
BslFI GGGAC 4 cut(s) 162, 358, 418, 596
BslI CCNNNNNNNGG 3 cut(s) 63, 64, 890
BsmFI GGGAC 4 cut(s) 162, 358, 418, 596
BsmI GAATGC 1 cut(s) 551
BsnI GGCC 5 cut(s) 272, 639, 811, 869, 964
BsoBI CYCGRG 1 cut(s) 824
Bsp1286I GDGCHC 1 cut(s) 582
Bsp19I CCATGG 2 cut(s) 803, 839
BspACI CCGC 1 cut(s) 468
BspANI GGCC 5 cut(s) 272, 639, 811, 869, 964
BspCNI CTCAG 2 cut(s) 511, 528
BspFNI CGCG 1 cut(s) 677
BspLI GGNNCC 3 cut(s) 346, 472, 728
BsrDI GCAATG 1 cut(s) 137
BsrI ACTGG 2 cut(s) 23, 699
BssECI CCNNGG 7 cut(s) 57, 199, 273, 634, 722, 803, 839
BssSI CACGAG 1 cut(s) 8
BssT1I CCWWGG 3 cut(s) 722, 803, 839
Bst2BI CACGAG 1 cut(s) 8
Bst2UI CCWGG 3 cut(s) 59, 201, 274
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 2 cut(s) 406, 417
BstC8I GCNNGC 3 cut(s) 247, 436, 662
BstDEI CTNAG 2 cut(s) 498, 515
BstDSI CCRYGG 2 cut(s) 803, 839
BstF5I GGATG 4 cut(s) 268, 283, 371, 879
BstFNI CGCG 1 cut(s) 677
BstHHI GCGC 1 cut(s) 904
BstMWI GCNNNNNNNGC 2 cut(s) 48, 278
BstNI CCWGG 3 cut(s) 59, 201, 274
BstNSI RCATGY 2 cut(s) 155, 664
BstPAI GACNNNNGTC 1 cut(s) 699
BstSCI CCNGG 3 cut(s) 57, 199, 272
BstUI CGCG 1 cut(s) 677
BstV1I GCAGC 2 cut(s) 178, 743
BstV2I GAAGAC 1 cut(s) 120
BstXI CCANNNNNNTGG 1 cut(s) 723
BsuRI GGCC 5 cut(s) 272, 639, 811, 869, 964
BtgI CCRYGG 2 cut(s) 803, 839
BtsCI GGATG 4 cut(s) 268, 283, 371, 879
Cac8I GCNNGC 3 cut(s) 247, 436, 662
CfoI GCGC 1 cut(s) 904
Cfr13I GGNCC 1 cut(s) 345
Csp6I GTAC 2 cut(s) 22, 159
CviAII CATG 6 cut(s) 152, 541, 661, 788, 804, 840
CviQI GTAC 2 cut(s) 22, 159
DdeI CTNAG 2 cut(s) 498, 515
DraIII CACNNNGTG 1 cut(s) 306
DrdI GACNNNNNNGTC 1 cut(s) 352
DseDI GACNNNNNNGTC 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 809
Eam1104I CTCTTC 2 cut(s) 406, 417
EarI CTCTTC 2 cut(s) 406, 417
Eco130I CCWWGG 3 cut(s) 722, 803, 839
Eco32I GATATC 1 cut(s) 536
Eco47I GGWCC 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 824
EcoRII CCWGG 3 cut(s) 57, 199, 272
EcoRV GATATC 1 cut(s) 536
EcoT14I CCWWGG 3 cut(s) 722, 803, 839
EcoT22I ATGCAT 1 cut(s) 666
ErhI CCWWGG 3 cut(s) 722, 803, 839
FaeI CATG 6 cut(s) 155, 544, 664, 791, 807, 843
FaqI GGGAC 4 cut(s) 162, 358, 418, 596
FatI CATG 6 cut(s) 151, 540, 660, 787, 803, 839
Fnu4HI GCNGC 2 cut(s) 167, 757
FokI GGATG 4 cut(s) 275, 290, 378, 866
Fsp4HI GCNGC 2 cut(s) 167, 757
FspBI CTAG 2 cut(s) 177, 970
GlaI GCGC 1 cut(s) 903
GluI GCNGC 2 cut(s) 167, 757
GsuI CTGGAG 1 cut(s) 103
HaeIII GGCC 5 cut(s) 272, 639, 811, 869, 964
HhaI GCGC 1 cut(s) 904
Hin1II CATG 6 cut(s) 155, 544, 664, 791, 807, 843
Hin6I GCGC 1 cut(s) 902
HinP1I GCGC 1 cut(s) 902
HinfI GANTC 2 cut(s) 108, 508
HphI GGTGA 2 cut(s) 188, 623
Hpy166II GTNNAC 2 cut(s) 16, 309
Hpy188I TCNGA 2 cut(s) 103, 518
Hpy188III TCNNGA 8 cut(s) 82, 130, 172, 211, 500, 556, 692, 958
Hpy8I GTNNAC 2 cut(s) 16, 309
HpyAV CCTTC 6 cut(s) 82, 86, 139, 400, 722, 802
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 2 cut(s) 765, 848
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 278
HpyF3I CTNAG 2 cut(s) 498, 515
HpySE526I ACGT 2 cut(s) 765, 848
Hsp92II CATG 6 cut(s) 155, 544, 664, 791, 807, 843
HspAI GCGC 1 cut(s) 902
LmnI GCTCC 3 cut(s) 95, 569, 753
Lsp1109I GCAGC 2 cut(s) 178, 743
LweI GCATC 2 cut(s) 268, 864
MaeI CTAG 2 cut(s) 177, 970
MaeII ACGT 2 cut(s) 765, 848
MboII GAAGA 5 cut(s) 125, 423, 434, 680, 763
MhlI GDGCHC 1 cut(s) 582
MlsI TGGCCA 1 cut(s) 811
MluCI AATT 4 cut(s) 479, 546, 927, 938
MluI ACGCGT 1 cut(s) 675
MluNI TGGCCA 1 cut(s) 811
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 8 cut(s) 78, 388, 496, 644, 770, 833, 954, 957
Mox20I TGGCCA 1 cut(s) 811
Mph1103I ATGCAT 1 cut(s) 666
MscI TGGCCA 1 cut(s) 811
MseI TTAA 2 cut(s) 441, 705
Msp20I TGGCCA 1 cut(s) 811
MspR9I CCNGG 3 cut(s) 59, 201, 274
Mva1269I GAATGC 1 cut(s) 551
MvaI CCWGG 3 cut(s) 59, 201, 274
MvnI CGCG 1 cut(s) 677
MwoI GCNNNNNNNGC 2 cut(s) 48, 278
NcoI CCATGG 2 cut(s) 803, 839
NlaIII CATG 6 cut(s) 155, 544, 664, 791, 807, 843
NlaIV GGNNCC 3 cut(s) 346, 472, 728
NmeAIII GCCGAG 1 cut(s) 615
NsiI ATGCAT 1 cut(s) 666
NspI RCATGY 2 cut(s) 155, 664
PaeI GCATGC 1 cut(s) 664
PaeR7I CTCGAG 1 cut(s) 824
PciI ACATGT 1 cut(s) 151
PctI GAATGC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 508
PflFI GACNNNGTC 2 cut(s) 29, 590
PkrI GCNGC 2 cut(s) 168, 758
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PscI ACATGT 1 cut(s) 151
PshAI GACNNNNGTC 1 cut(s) 699
PshBI ATTAAT 1 cut(s) 441
Psp6I CCWGG 3 cut(s) 57, 199, 272
PspGI CCWGG 3 cut(s) 57, 199, 272
PspN4I GGNNCC 3 cut(s) 346, 472, 728
PspPI GGNCC 1 cut(s) 345
PspXI VCTCGAGB 1 cut(s) 824
PsyI GACNNNGTC 2 cut(s) 29, 590
RsaI GTAC 2 cut(s) 23, 160
RsaNI GTAC 2 cut(s) 22, 159
SaqAI TTAA 2 cut(s) 441, 705
SatI GCNGC 2 cut(s) 167, 757
Sau96I GGNCC 1 cut(s) 345
ScaI AGTACT 1 cut(s) 160
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 3 cut(s) 59, 201, 274
SduI GDGCHC 1 cut(s) 582
SetI ASST 8 cut(s) 100, 171, 392, 636, 758, 768, 831, 851
SfaNI GCATC 2 cut(s) 268, 864
Sfr274I CTCGAG 1 cut(s) 824
SinI GGWCC 1 cut(s) 345
SlaI CTCGAG 1 cut(s) 824
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
SpeI ACTAGT 1 cut(s) 176
SphI GCATGC 1 cut(s) 664
Sse9I AATT 4 cut(s) 479, 546, 927, 938
SsiI CCGC 1 cut(s) 468
SspMI CTAG 2 cut(s) 177, 970
StyD4I CCNGG 3 cut(s) 57, 199, 272
StyI CCWWGG 3 cut(s) 722, 803, 839
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 2 cut(s) 768, 851
TaqI TCGA 2 cut(s) 111, 825
TasI AATT 4 cut(s) 479, 546, 927, 938
TatI WGTACW 1 cut(s) 158
TfiI GAWTC 1 cut(s) 508
Tru1I TTAA 2 cut(s) 441, 705
Tru9I TTAA 2 cut(s) 441, 705
TseI GCWGC 2 cut(s) 166, 756
TspDTI ATGAA 4 cut(s) 280, 726, 776, 926
TspGWI ACGGA 2 cut(s) 719, 807
Tth111I GACNNNGTC 2 cut(s) 29, 590
VpaK11BI GGWCC 1 cut(s) 345
VspI ATTAAT 1 cut(s) 441
XceI RCATGY 2 cut(s) 155, 664
XhoI CTCGAG 1 cut(s) 824
XspI CTAG 2 cut(s) 177, 970
ZrmI AGTACT 1 cut(s) 160
Zsp2I ATGCAT 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.