Rroxscaffold_6G00395770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013474
Physical Location & Seq
Forward (+)
16932763 .. 16935626
2864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00395770.1

Sequence Viewer

Length: 1011 bp
ATGGCACTCGTGGTTTACTGGTACGACTTCGTCTGCTTCGGCATTGTTGGCCTCTCCTTGGTTTGGGCTTTGTGGGTCATCTGGAAGAAGGAAGGAGCTTCGGAGAGAGTCGAAGACAGCACCGTGTATGAGAGCCTTCTGGTGACCCGACCCGATGGCGAGGTGTTCGTGAGTGCATTGCCCAAGGGACATGTTAGTACTTCGCAGCTCTGGACTAGTTGCTGGAAAGGGCTTCACCCTGGTTGGCTCTTGGCCATTCGGTTTGTGTCGTTTCTGGTCTTGGCCGGCTTCTTGGCTTGGGATGTTTTGGCCTGGGATGCTTCCATTTTCATTTACTACACCGAGTGGACTTTCACATTGGTTATGCTGTATTTTGCGTTGGGAACCATAGTGTCTGGTTATGGATGGTGGTTGTCCTCAAGCAAACCCTTCTCTGCAAATGGGACAAGAAGAGATTTGGAAGAGAATAATGCAAGCGTTAATACTTATAGAAAAAATGGAACTAGTGGAACCATTAAATTGCAAAGCCACTATGCTCAGGAGGAGATTCAACTCAGAGCAGGATTTTGGGGATATCTCATGCAAATTGCATTCCAGACTTGTGCAGGAGCAGTTGTGCTCACGGACATTGTCTTTTGGTGTGTCATCGTCCCATTTTTATCAACTTCTCACCTCGGCCTAAATATGTTGATGGGTTGCATGCATACTATGAATGCGTTTTTTATTCTTCTGGACACCAGTCTTAATAGCCTTCCATTTCCTTGGTTCCGTCTTTCATATTTTGTTCTTTGGAGCTGCCTCTACGTCATCTTCCAATGGGTCATTCATGCCTTCGGTTTCCCATGGTGGCCATATCCGTTCCTCGAGCTTGATACACCATGGGCTACATTATGGTATTTTTGTATGGCCTTGATGCACATCCCTTGTTATGGGATTTTTGCGCTGATTATGAAAGCCAAGTATTCAATTTTCCCCAGATTGTTTCCTCACGCTTTCGTGAGGCCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

38.85

Weight (kDa)

6.69

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47115
fragaria_vesca FvH4_1g26530 FvH4_1g26530
malus_domestica MD09G1288800.v1.1 MD17G1280700.v1.1
prunus_persica Prupe.3G004800_v2.0.a1
pyrus_communis pycom09g19580 pycom17g27850
rosa_chinensis RchiOBHm_Chr3g0486611
rosa_laevigata RLG00000023073
rosa_multiflora Rmu_sc0001508.1_g000003
rosa_roxburghii Rroxscaffold_6G00395770
rosa_rugosa Rorug03G0225600 Rorug03G0225700
rosa_samantha Rh3AG275500 Rh3CG309900 Rh3DG306600
rosa_wichuraiana Rw3G024550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 3 cut(s) 252, 282, 848
AdeI CACNNNGTG 1 cut(s) 345
AfaI GTAC 2 cut(s) 23, 199
AfiI CCNNNNNNNGG 3 cut(s) 58, 63, 929
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 2 cut(s) 551, 966
AhlI ACTAGT 2 cut(s) 215, 503
AjnI CCWGG 2 cut(s) 238, 311
AjuI GAANNNNNNNTTGG 2 cut(s) 807, 839
AluBI AGCT 4 cut(s) 98, 208, 795, 868
AluI AGCT 4 cut(s) 98, 208, 795, 868
Alw21I GWGCWC 1 cut(s) 621
Ama87I CYCGRG 1 cut(s) 863
AoxI GGCC 8 cut(s) 49, 252, 282, 309, 676, 848, 906, 1001
ApeKI GCWGC 2 cut(s) 205, 795
AspLEI GCGC 1 cut(s) 943
AsuHPI GGTGA 3 cut(s) 154, 227, 662
AvaI CYCGRG 1 cut(s) 863
BalI TGGCCA 2 cut(s) 254, 850
BauI CACGAG 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 621
BbvI GCAGC 2 cut(s) 217, 782
BccI CCATC 3 cut(s) 149, 399, 685
BciT130I CCWGG 2 cut(s) 240, 313
BcuI ACTAGT 2 cut(s) 215, 503
BfaI CTAG 3 cut(s) 216, 504, 1009
BisI GCNGC 2 cut(s) 206, 796
BlsI GCNGC 2 cut(s) 207, 797
BmcAI AGTACT 1 cut(s) 199
Bme1390I CCNGG 2 cut(s) 240, 313
BmeT110I CYCGRG 1 cut(s) 863
BmiI GGNNCC 3 cut(s) 385, 511, 767
BmrFI CCNGG 2 cut(s) 240, 313
BmsI GCATC 2 cut(s) 307, 903
BoxI GACNNNNGTC 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 120
Bpu10I CCTNAGC 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 403
BsaBI GATNNNNATC 1 cut(s) 917
BsaJI CCNNGG 8 cut(s) 57, 183, 238, 312, 673, 761, 842, 878
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 63, 929
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 2 cut(s) 23, 738
Bse3DI GCAATG 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 917
BseBI CCWGG 2 cut(s) 240, 313
BseDI CCNNGG 8 cut(s) 57, 183, 238, 312, 673, 761, 842, 878
BseGI GGATG 4 cut(s) 307, 322, 410, 918
BseJI GATNNNNATC 1 cut(s) 917
BseLI CCNNNNNNNGG 3 cut(s) 58, 63, 929
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 2 cut(s) 551, 568
BseNI ACTGG 2 cut(s) 23, 738
BseRI GAGGAG 1 cut(s) 557
BseXI GCAGC 2 cut(s) 217, 782
BsgI GTGCAG 1 cut(s) 624
BshFI GGCC 8 cut(s) 51, 254, 284, 311, 678, 850, 908, 1003
BsiHKAI GWGCWC 1 cut(s) 621
BsiHKCI CYCGRG 1 cut(s) 863
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 3 cut(s) 201, 457, 635
BslI CCNNNNNNNGG 3 cut(s) 58, 63, 929
BsmFI GGGAC 3 cut(s) 201, 457, 635
BsmI GAATGC 2 cut(s) 590, 718
BsnI GGCC 8 cut(s) 51, 254, 284, 311, 678, 850, 908, 1003
BsoBI CYCGRG 1 cut(s) 863
Bsp1286I GDGCHC 1 cut(s) 621
Bsp19I CCATGG 2 cut(s) 842, 878
BspANI GGCC 8 cut(s) 51, 254, 284, 311, 678, 850, 908, 1003
BspCNI CTCAG 2 cut(s) 550, 567
BspLI GGNNCC 3 cut(s) 385, 511, 767
BsrDI GCAATG 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 2 cut(s) 23, 738
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 8 cut(s) 57, 183, 238, 312, 673, 761, 842, 878
BssSI CACGAG 1 cut(s) 8
BssT1I CCWWGG 5 cut(s) 57, 183, 761, 842, 878
Bst2BI CACGAG 1 cut(s) 8
Bst2UI CCWGG 2 cut(s) 240, 313
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 2 cut(s) 445, 456
BstC8I GCNNGC 3 cut(s) 286, 475, 701
BstDEI CTNAG 2 cut(s) 537, 554
BstDSI CCRYGG 2 cut(s) 842, 878
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 4 cut(s) 307, 322, 410, 918
BstHHI GCGC 1 cut(s) 943
BstMWI GCNNNNNNNGC 2 cut(s) 48, 317
BstNI CCWGG 2 cut(s) 240, 313
BstNSI RCATGY 2 cut(s) 194, 703
BstPAI GACNNNNGTC 1 cut(s) 738
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 238, 311
BstV1I GCAGC 2 cut(s) 217, 782
BstV2I GAAGAC 1 cut(s) 120
BstXI CCANNNNNNTGG 1 cut(s) 762
BsuRI GGCC 8 cut(s) 51, 254, 284, 311, 678, 850, 908, 1003
BtgI CCRYGG 2 cut(s) 842, 878
BtsCI GGATG 4 cut(s) 307, 322, 410, 918
Cac8I GCNNGC 3 cut(s) 286, 475, 701
CfoI GCGC 1 cut(s) 943
Cfr10I RCCGGY 1 cut(s) 284
Csp6I GTAC 2 cut(s) 22, 198
CviAII CATG 6 cut(s) 191, 580, 700, 827, 843, 879
CviQI GTAC 2 cut(s) 22, 198
DdeI CTNAG 2 cut(s) 537, 554
DraIII CACNNNGTG 1 cut(s) 345
EaeI YGGCCR 3 cut(s) 252, 282, 848
Eam1104I CTCTTC 2 cut(s) 445, 456
EarI CTCTTC 2 cut(s) 445, 456
Eco130I CCWWGG 5 cut(s) 57, 183, 761, 842, 878
Eco32I GATATC 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 863
Eco91I GGTNACC 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 238, 311
EcoRV GATATC 1 cut(s) 575
EcoT14I CCWWGG 5 cut(s) 57, 183, 761, 842, 878
EcoT22I ATGCAT 1 cut(s) 705
ErhI CCWWGG 5 cut(s) 57, 183, 761, 842, 878
FaeI CATG 6 cut(s) 194, 583, 703, 830, 846, 882
FaqI GGGAC 3 cut(s) 201, 457, 635
FatI CATG 6 cut(s) 190, 579, 699, 826, 842, 878
Fnu4HI GCNGC 2 cut(s) 206, 796
FokI GGATG 4 cut(s) 314, 329, 417, 905
Fsp4HI GCNGC 2 cut(s) 206, 796
FspBI CTAG 3 cut(s) 216, 504, 1009
GlaI GCGC 1 cut(s) 942
GluI GCNGC 2 cut(s) 206, 796
HaeIII GGCC 8 cut(s) 51, 254, 284, 311, 678, 850, 908, 1003
HapII CCGG 1 cut(s) 285
HhaI GCGC 1 cut(s) 943
Hin1II CATG 6 cut(s) 194, 583, 703, 830, 846, 882
Hin6I GCGC 1 cut(s) 941
HinP1I GCGC 1 cut(s) 941
HinfI GANTC 2 cut(s) 108, 547
HpaII CCGG 1 cut(s) 285
HphI GGTGA 3 cut(s) 154, 227, 662
Hpy166II GTNNAC 2 cut(s) 16, 348
Hpy188I TCNGA 2 cut(s) 103, 557
Hpy188III TCNNGA 7 cut(s) 82, 169, 211, 539, 595, 731, 997
Hpy8I GTNNAC 2 cut(s) 16, 348
HpyAV CCTTC 6 cut(s) 82, 86, 146, 439, 761, 841
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 804
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 317
HpyF3I CTNAG 2 cut(s) 537, 554
HpySE526I ACGT 1 cut(s) 804
Hsp92II CATG 6 cut(s) 194, 583, 703, 830, 846, 882
HspAI GCGC 1 cut(s) 941
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
LmnI GCTCC 3 cut(s) 95, 608, 792
Lsp1109I GCAGC 2 cut(s) 217, 782
LweI GCATC 2 cut(s) 307, 903
MaeI CTAG 3 cut(s) 216, 504, 1009
MaeII ACGT 1 cut(s) 804
MaeIII GTNAC 1 cut(s) 142
MboII GAAGA 6 cut(s) 97, 125, 462, 473, 719, 802
MhlI GDGCHC 1 cut(s) 621
MlsI TGGCCA 2 cut(s) 254, 850
MluCI AATT 3 cut(s) 518, 585, 966
MluNI TGGCCA 2 cut(s) 254, 850
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 9 cut(s) 62, 154, 427, 535, 683, 809, 872, 993, 996
Mox20I TGGCCA 2 cut(s) 254, 850
Mph1103I ATGCAT 1 cut(s) 705
MroNI GCCGGC 1 cut(s) 284
MscI TGGCCA 2 cut(s) 254, 850
MseI TTAA 3 cut(s) 480, 516, 744
Msp20I TGGCCA 2 cut(s) 254, 850
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 2 cut(s) 240, 313
Mva1269I GAATGC 2 cut(s) 590, 718
MvaI CCWGG 2 cut(s) 240, 313
MwoI GCNNNNNNNGC 2 cut(s) 48, 317
NaeI GCCGGC 1 cut(s) 286
NcoI CCATGG 2 cut(s) 842, 878
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 6 cut(s) 194, 583, 703, 830, 846, 882
NlaIV GGNNCC 3 cut(s) 385, 511, 767
NmeAIII GCCGAG 1 cut(s) 654
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 705
NspI RCATGY 2 cut(s) 194, 703
PaeI GCATGC 1 cut(s) 703
PaeR7I CTCGAG 1 cut(s) 863
PciI ACATGT 1 cut(s) 190
PctI GAATGC 2 cut(s) 590, 718
PdiI GCCGGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 547
PflFI GACNNNGTC 2 cut(s) 29, 629
PkrI GCNGC 2 cut(s) 207, 797
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PscI ACATGT 1 cut(s) 190
PshAI GACNNNNGTC 1 cut(s) 738
Psp6I CCWGG 2 cut(s) 238, 311
PspEI GGTNACC 1 cut(s) 142
PspGI CCWGG 2 cut(s) 238, 311
PspN4I GGNNCC 3 cut(s) 385, 511, 767
PspXI VCTCGAGB 1 cut(s) 863
PsyI GACNNNGTC 2 cut(s) 29, 629
RsaI GTAC 2 cut(s) 23, 199
RsaNI GTAC 2 cut(s) 22, 198
SaqAI TTAA 3 cut(s) 480, 516, 744
SatI GCNGC 2 cut(s) 206, 796
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 2 cut(s) 240, 313
SduI GDGCHC 1 cut(s) 621
SetI ASST 7 cut(s) 100, 165, 210, 675, 797, 807, 870
SfaNI GCATC 2 cut(s) 307, 903
Sfr274I CTCGAG 1 cut(s) 863
SlaI CTCGAG 1 cut(s) 863
SmlI CTYRAG 2 cut(s) 418, 863
SmoI CTYRAG 2 cut(s) 418, 863
SpeI ACTAGT 2 cut(s) 215, 503
SphI GCATGC 1 cut(s) 703
Sse9I AATT 3 cut(s) 518, 585, 966
SspMI CTAG 3 cut(s) 216, 504, 1009
StyD4I CCNGG 2 cut(s) 238, 311
StyI CCWWGG 5 cut(s) 57, 183, 761, 842, 878
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 807
TaqI TCGA 2 cut(s) 111, 864
TasI AATT 3 cut(s) 518, 585, 966
TatI WGTACW 1 cut(s) 197
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 3 cut(s) 480, 516, 744
Tru9I TTAA 3 cut(s) 480, 516, 744
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 205, 795
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 5 cut(s) 319, 725, 765, 815, 965
TspGWI ACGGA 3 cut(s) 638, 758, 846
Tth111I GACNNNGTC 2 cut(s) 29, 629
XceI RCATGY 2 cut(s) 194, 703
XhoI CTCGAG 1 cut(s) 863
XspI CTAG 3 cut(s) 216, 504, 1009
ZrmI AGTACT 1 cut(s) 199
Zsp2I ATGCAT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.