Rh3CG309900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013474
Physical Location & Seq
Reverse (-)
32516920 .. 32519999
3080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG309900.1

Sequence Viewer

Length: 993 bp
ATGGCACTCGTGGTTTACTGGTACGACTTCGTCTGCTTCGGCATTGTTGGCTTCTCCCTGGTTTGGGCTTTGTGGGTCATCTGGAGGAAGGAAGGAGCTTCGGAGAGAGTCGAAGACAGCACCGTGTATGAGAGCCTTCTGGTGACCCGACCCGATGGCGAGGTGTTCGTGAGTGCATTGCCCAAGGGACATGTTAGTACTTCGCAGCTCTGGACTAGTTGCTGGAAAGGGCTTCACCCTGGTTGGCTCTTGACCATTCGGTTTGTGTCGTTTCTGGTCTTGGCTGGCTTCTTGGCTTGGGATGTTTTGGCCTGGGATGCTTCCATTTTCATTTACTACACCGAGTGGACTTTCACATTGGTTATGCTGTATTTTGGGTTGGGGACCATAGTGTCTGGTTATGGATGGTGGTTGTCCTCAAACAAAACCTTCTCTGCAAATGGGACAAGAAGAGATTTGGAAGAGAATAATGCAAGCATTAATACTTATAGGAAAAATGGAAATAGCGGAACCATCAAATTGCAAAGCCACTATGCTCAGGAGGAGATTCAACTCAGAGCAGGATTTTGGGGATATCTCATGCAAATTGCATTCCAGACTTGTGCAGGAGCAGTTGTGCTCACGGACATTGTCTTTTGGTGTGTCATCGTCCCATTCTTATCAACTTCTCACCTCGGCCTAAATATGTTGATGGGTTGCATGCATACTTTGAACGCATTTTTTATTCTTCTGGACACCAGTCTTAATAGCCTTGTAAGTTTTCAATCTGGCAGCTTGGAAACTCTTATACACCTGGTTTTTGTATACCATGTCTTTCTCCATATGTTAGTGATATCATTTCCATCTTGTCTTACAGCCATTTCCTTGGTTCCGTCTTTCATATTTTGTTCTTTGGAGCTGCCTCTACGTCATCTTCCAATGGGTCATTCATGCCTTCGGTTTCCCATGGTATGCATAATACTGAAACCTTTTCTCTGTAACAAACTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

37.42

Weight (kDa)

6.54

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47115
fragaria_vesca FvH4_1g26530 FvH4_1g26530
malus_domestica MD09G1288800.v1.1 MD17G1280700.v1.1
prunus_persica Prupe.3G004800_v2.0.a1
pyrus_communis pycom09g19580 pycom17g27850
rosa_chinensis RchiOBHm_Chr3g0486611
rosa_laevigata RLG00000023073
rosa_multiflora Rmu_sc0001508.1_g000003
rosa_roxburghii Rroxscaffold_6G00395770
rosa_rugosa Rorug03G0225600 Rorug03G0225700
rosa_samantha Rh3AG275500 Rh3CG309900 Rh3DG306600
rosa_wichuraiana Rw3G024550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 391
AccI GTMKAC 1 cut(s) 804
AciI CCGC 1 cut(s) 507
AdeI CACNNNGTG 1 cut(s) 345
AfaI GTAC 2 cut(s) 23, 199
AfiI CCNNNNNNNGG 2 cut(s) 63, 64
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 3 cut(s) 551, 712, 764
AhlI ACTAGT 1 cut(s) 215
AjnI CCWGG 4 cut(s) 57, 238, 311, 792
AjuI GAANNNNNNNTTGG 2 cut(s) 910, 942
AluBI AGCT 4 cut(s) 98, 208, 774, 898
AluI AGCT 4 cut(s) 98, 208, 774, 898
Alw21I GWGCWC 1 cut(s) 621
AoxI GGCC 2 cut(s) 309, 676
ApeKI GCWGC 3 cut(s) 205, 771, 898
AseI ATTAAT 1 cut(s) 480
AspS9I GGNCC 1 cut(s) 384
AsuHPI GGTGA 3 cut(s) 154, 227, 662
AvaII GGWCC 1 cut(s) 384
BauI CACGAG 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 621
BbvI GCAGC 3 cut(s) 217, 783, 885
BccI CCATC 5 cut(s) 149, 399, 521, 685, 850
BciT130I CCWGG 4 cut(s) 59, 240, 313, 794
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 1 cut(s) 216
BisI GCNGC 3 cut(s) 206, 772, 899
BlsI GCNGC 3 cut(s) 207, 773, 900
BmcAI AGTACT 1 cut(s) 199
Bme1390I CCNGG 4 cut(s) 59, 240, 313, 794
Bme18I GGWCC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 3 cut(s) 385, 511, 870
BmrFI CCNGG 4 cut(s) 59, 240, 313, 794
BmsI GCATC 1 cut(s) 307
BoxI GACNNNNGTC 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 537
BsaJI CCNNGG 7 cut(s) 57, 183, 238, 312, 673, 864, 945
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 64
Bse1I ACTGG 2 cut(s) 23, 738
Bse3DI GCAATG 1 cut(s) 176
BseBI CCWGG 4 cut(s) 59, 240, 313, 794
BseDI CCNNGG 7 cut(s) 57, 183, 238, 312, 673, 864, 945
BseGI GGATG 3 cut(s) 307, 322, 410
BseLI CCNNNNNNNGG 2 cut(s) 63, 64
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 2 cut(s) 551, 568
BseNI ACTGG 2 cut(s) 23, 738
BseRI GAGGAG 1 cut(s) 557
BseXI GCAGC 3 cut(s) 217, 783, 885
BsgI GTGCAG 1 cut(s) 624
BshFI GGCC 2 cut(s) 311, 678
BsiHKAI GWGCWC 1 cut(s) 621
BslFI GGGAC 4 cut(s) 201, 397, 457, 635
BslI CCNNNNNNNGG 2 cut(s) 63, 64
BsmFI GGGAC 4 cut(s) 201, 397, 457, 635
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 2 cut(s) 311, 678
Bsp1286I GDGCHC 1 cut(s) 621
Bsp19I CCATGG 1 cut(s) 945
BspACI CCGC 1 cut(s) 507
BspANI GGCC 2 cut(s) 311, 678
BspCNI CTCAG 2 cut(s) 550, 567
BspLI GGNNCC 3 cut(s) 385, 511, 870
BsrDI GCAATG 1 cut(s) 176
BsrI ACTGG 2 cut(s) 23, 738
BssECI CCNNGG 7 cut(s) 57, 183, 238, 312, 673, 864, 945
BssNAI GTATAC 1 cut(s) 805
BssSI CACGAG 1 cut(s) 8
BssT1I CCWWGG 3 cut(s) 183, 864, 945
Bst1107I GTATAC 1 cut(s) 805
Bst2BI CACGAG 1 cut(s) 8
Bst2UI CCWGG 4 cut(s) 59, 240, 313, 794
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 2 cut(s) 445, 456
BstC8I GCNNGC 3 cut(s) 286, 475, 701
BstDEI CTNAG 2 cut(s) 537, 554
BstDSI CCRYGG 1 cut(s) 945
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 3 cut(s) 307, 322, 410
BstMWI GCNNNNNNNGC 2 cut(s) 48, 317
BstNI CCWGG 4 cut(s) 59, 240, 313, 794
BstNSI RCATGY 2 cut(s) 194, 703
BstPAI GACNNNNGTC 1 cut(s) 738
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 4 cut(s) 57, 238, 311, 792
BstV1I GCAGC 3 cut(s) 217, 783, 885
BstV2I GAAGAC 1 cut(s) 120
BstXI CCANNNNNNTGG 1 cut(s) 865
BstZ17I GTATAC 1 cut(s) 805
BsuRI GGCC 2 cut(s) 311, 678
BtgI CCRYGG 1 cut(s) 945
BtsCI GGATG 3 cut(s) 307, 322, 410
Cac8I GCNNGC 3 cut(s) 286, 475, 701
Cfr13I GGNCC 1 cut(s) 384
CsiI ACCWGGT 1 cut(s) 792
Csp6I GTAC 2 cut(s) 22, 198
CviAII CATG 6 cut(s) 191, 580, 700, 809, 930, 946
CviQI GTAC 2 cut(s) 22, 198
DdeI CTNAG 2 cut(s) 537, 554
DraIII CACNNNGTG 1 cut(s) 345
DrdI GACNNNNNNGTC 1 cut(s) 391
DseDI GACNNNNNNGTC 1 cut(s) 391
Eam1104I CTCTTC 2 cut(s) 445, 456
EarI CTCTTC 2 cut(s) 445, 456
Eco130I CCWWGG 3 cut(s) 183, 864, 945
Eco32I GATATC 2 cut(s) 575, 834
Eco47I GGWCC 1 cut(s) 384
Eco91I GGTNACC 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 142
EcoRII CCWGG 4 cut(s) 57, 238, 311, 792
EcoRV GATATC 2 cut(s) 575, 834
EcoT14I CCWWGG 3 cut(s) 183, 864, 945
EcoT22I ATGCAT 2 cut(s) 705, 956
ErhI CCWWGG 3 cut(s) 183, 864, 945
FaeI CATG 6 cut(s) 194, 583, 703, 812, 933, 949
FaqI GGGAC 4 cut(s) 201, 397, 457, 635
FatI CATG 6 cut(s) 190, 579, 699, 808, 929, 945
FauNDI CATATG 1 cut(s) 822
FblI GTMKAC 1 cut(s) 804
Fnu4HI GCNGC 3 cut(s) 206, 772, 899
FokI GGATG 3 cut(s) 314, 329, 417
Fsp4HI GCNGC 3 cut(s) 206, 772, 899
FspBI CTAG 1 cut(s) 216
GluI GCNGC 3 cut(s) 206, 772, 899
GsuI CTGGAG 1 cut(s) 103
HaeIII GGCC 2 cut(s) 311, 678
Hin1II CATG 6 cut(s) 194, 583, 703, 812, 933, 949
HinfI GANTC 2 cut(s) 108, 547
HphI GGTGA 3 cut(s) 154, 227, 662
Hpy166II GTNNAC 3 cut(s) 16, 348, 805
Hpy188I TCNGA 2 cut(s) 103, 557
Hpy188III TCNNGA 7 cut(s) 82, 169, 211, 250, 539, 595, 731
Hpy8I GTNNAC 3 cut(s) 16, 348, 805
HpyAV CCTTC 5 cut(s) 82, 86, 146, 439, 944
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 907
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 317
HpyF3I CTNAG 2 cut(s) 537, 554
HpySE526I ACGT 1 cut(s) 907
Hsp92II CATG 6 cut(s) 194, 583, 703, 812, 933, 949
LmnI GCTCC 3 cut(s) 95, 608, 895
Lsp1109I GCAGC 3 cut(s) 217, 783, 885
LweI GCATC 1 cut(s) 307
MabI ACCWGGT 1 cut(s) 792
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 907
MaeIII GTNAC 2 cut(s) 142, 977
MboII GAAGA 5 cut(s) 125, 462, 473, 719, 905
MhlI GDGCHC 1 cut(s) 621
MluCI AATT 2 cut(s) 518, 585
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 6 cut(s) 78, 154, 427, 535, 683, 912
Mph1103I ATGCAT 2 cut(s) 705, 956
MseI TTAA 3 cut(s) 480, 744, 987
MspR9I CCNGG 4 cut(s) 59, 240, 313, 794
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 4 cut(s) 59, 240, 313, 794
MwoI GCNNNNNNNGC 2 cut(s) 48, 317
NcoI CCATGG 1 cut(s) 945
NdeI CATATG 1 cut(s) 822
NlaIII CATG 6 cut(s) 194, 583, 703, 812, 933, 949
NlaIV GGNNCC 3 cut(s) 385, 511, 870
NmeAIII GCCGAG 1 cut(s) 654
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 2 cut(s) 705, 956
NspI RCATGY 2 cut(s) 194, 703
PaeI GCATGC 1 cut(s) 703
PciI ACATGT 1 cut(s) 190
PctI GAATGC 1 cut(s) 590
PfeI GAWTC 1 cut(s) 547
PflFI GACNNNGTC 2 cut(s) 29, 629
PkrI GCNGC 3 cut(s) 207, 773, 900
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PscI ACATGT 1 cut(s) 190
PshAI GACNNNNGTC 1 cut(s) 738
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 4 cut(s) 57, 238, 311, 792
PspEI GGTNACC 1 cut(s) 142
PspGI CCWGG 4 cut(s) 57, 238, 311, 792
PspN4I GGNNCC 3 cut(s) 385, 511, 870
PspPI GGNCC 1 cut(s) 384
PsyI GACNNNGTC 2 cut(s) 29, 629
RsaI GTAC 2 cut(s) 23, 199
RsaNI GTAC 2 cut(s) 22, 198
SaqAI TTAA 3 cut(s) 480, 744, 987
SatI GCNGC 3 cut(s) 206, 772, 899
Sau96I GGNCC 1 cut(s) 384
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 4 cut(s) 59, 240, 313, 794
SduI GDGCHC 1 cut(s) 621
SexAI ACCWGGT 1 cut(s) 792
SfaNI GCATC 1 cut(s) 307
SinI GGWCC 1 cut(s) 384
SpeI ACTAGT 1 cut(s) 215
SphI GCATGC 1 cut(s) 703
Sse9I AATT 2 cut(s) 518, 585
SsiI CCGC 1 cut(s) 507
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 4 cut(s) 57, 238, 311, 792
StyI CCWWGG 3 cut(s) 183, 864, 945
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 910
TaqI TCGA 1 cut(s) 111
TasI AATT 2 cut(s) 518, 585
TatI WGTACW 1 cut(s) 197
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 3 cut(s) 480, 744, 987
Tru9I TTAA 3 cut(s) 480, 744, 987
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 3 cut(s) 205, 771, 898
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 319, 868, 918
TspGWI ACGGA 2 cut(s) 638, 861
Tth111I GACNNNGTC 2 cut(s) 29, 629
VpaK11BI GGWCC 1 cut(s) 384
VspI ATTAAT 1 cut(s) 480
XceI RCATGY 2 cut(s) 194, 703
XmiI GTMKAC 1 cut(s) 804
XspI CTAG 1 cut(s) 216
ZrmI AGTACT 1 cut(s) 199
Zsp2I ATGCAT 2 cut(s) 705, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.