FvH4_1g26530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013474
Physical Location & Seq
Reverse (-)
18343405 .. 18346547
3143 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26530.t2

Sequence Viewer

Length: 993 bp
ATGGCACTCGTGGTTTACTGGTACGACTTCGTCTGCTTCGGCATTGTAGGCGTCGCCATGGTTTGGGCTCTGTTGGGCATTTGGAAGAAGGAAGGAGCCTCGGAGAGATTCGAAGACAGTACTGTGTACGAGAGCCTTCTGGTGACCCGTCCCGATGCGGAGGTGTTCGTGAGTGCATTGCCCAAGGGACATGTTAGTACTTCGCAGCTCTGGACTAGTTGCTGGAAAGGGCTTCATCCTGGTTGGCTCCTCGCCTTTCGGTTCGTCTCGTTTCTGGTCATGGCTGGCTTTTTGGCTTGGGATGTTTTGGCCTGGGATGCTTCCATCTTCATTTACTACACCGAGTGGACTTTCACATTGGTTATGCTGTATTTTGGGTTGGGGACCATAGTGTCTGGTTACGGATGGTGGTTGTCCTCAAACAAACCCGTCTCTGCAAATGGGACAAGAGATTTGGAAGAGAATACTTATAGGCAAAATGGAAACAACAGAACCATCAAATTGCAAAGCCACTATGCTCAGGAGGAGATTCAACTCAGAGCAGGATTTTGGGGATATCTCATGCAAATTGCATTCCAGACTTGTGCAGGAGCAGTGGTCCTCACGGACGTTGTCTTTTGGTGTGTCATCGTCCCATTTTTATCAACTTCTCACCTCGGCCTCAATGTGTTGATGGGCTGCATGCATACTTTGAATGCGTTCTTTATTCTTCTGGACACCAGTCTTAACAGCCTTCCATTTCCTTGGTTTCGGCTCTCATATTTCGTTCTTTGGAGCTGCCTCTATGTCATCTTTCAATGGGTCATTCATGCCCTTGGTTTCCCATGGTGGCCATATCCGTTCCTCGAGCTCGATACACCATGGGCTACATTGTGGTATTTTTGTATGGCCTTGATTCACATCCCTTGTTATGGGATTTTTGCGCTGATTATAAAAGCCAAGTACACAATTTTCCCCAAATTGTTTCCTCATGCTTTCGTGAGGCCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

38.15

Weight (kDa)

6.43

Isoelectric Point (pI)

32.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47115
fragaria_vesca FvH4_1g26530 FvH4_1g26530
malus_domestica MD09G1288800.v1.1 MD17G1280700.v1.1
prunus_persica Prupe.3G004800_v2.0.a1
pyrus_communis pycom09g19580 pycom17g27850
rosa_chinensis RchiOBHm_Chr3g0486611
rosa_laevigata RLG00000023073
rosa_multiflora Rmu_sc0001508.1_g000003
rosa_roxburghii Rroxscaffold_6G00395770
rosa_rugosa Rorug03G0225600 Rorug03G0225700
rosa_samantha Rh3AG275500 Rh3CG309900 Rh3DG306600
rosa_wichuraiana Rw3G024550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 932
AasI GACNNNNNNGTC 1 cut(s) 391
AccB7I CCANNNNNTGG 1 cut(s) 63
AciI CCGC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 830
AcyI GRCGYC 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 345
AfaI GTAC 5 cut(s) 23, 121, 128, 199, 944
AfiI CCNNNNNNNGG 2 cut(s) 63, 911
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 3 cut(s) 533, 694, 797
AhlI ACTAGT 1 cut(s) 215
AjnI CCWGG 2 cut(s) 238, 311
AluBI AGCT 3 cut(s) 208, 777, 850
AluI AGCT 3 cut(s) 208, 777, 850
Alw21I GWGCWC 1 cut(s) 852
Alw26I GTCTC 2 cut(s) 271, 436
Ama87I CYCGRG 1 cut(s) 845
AoxI GGCC 5 cut(s) 309, 658, 830, 888, 983
ApeKI GCWGC 3 cut(s) 205, 678, 777
ArsI GACNNNNNNTTYG 2 cut(s) 436, 468
Asp700I GAANNNNTTC 1 cut(s) 698
AspLEI GCGC 1 cut(s) 925
AspS9I GGNCC 2 cut(s) 384, 598
AsuHPI GGTGA 2 cut(s) 154, 644
AsuII TTCGAA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 845
AvaII GGWCC 2 cut(s) 384, 598
BalI TGGCCA 1 cut(s) 832
BanII GRGCYC 2 cut(s) 70, 852
BauI CACGAG 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 852
BbvI GCAGC 3 cut(s) 217, 665, 764
BccI CCATC 4 cut(s) 332, 399, 503, 667
BciT130I CCWGG 2 cut(s) 240, 313
BcoDI GTCTC 2 cut(s) 271, 436
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 2 cut(s) 216, 991
BisI GCNGC 3 cut(s) 206, 679, 778
BlsI GCNGC 3 cut(s) 207, 680, 779
BmcAI AGTACT 2 cut(s) 121, 199
Bme1390I CCNGG 2 cut(s) 240, 313
Bme18I GGWCC 2 cut(s) 384, 598
BmeT110I CYCGRG 1 cut(s) 845
BmgT120I GGNCC 2 cut(s) 384, 598
BmiI GGNNCC 3 cut(s) 97, 248, 385
BmrFI CCNGG 2 cut(s) 240, 313
BmsI GCATC 2 cut(s) 145, 307
BoxI GACNNNNGTC 1 cut(s) 720
BpiI GAAGAC 1 cut(s) 120
Bpu10I CCTNAGC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 899
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 9 cut(s) 57, 99, 183, 312, 655, 743, 814, 824, 860
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 911
Bse1I ACTGG 2 cut(s) 23, 720
Bse3DI GCAATG 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 899
BseBI CCWGG 2 cut(s) 240, 313
BseDI CCNNGG 9 cut(s) 57, 99, 183, 312, 655, 743, 814, 824, 860
BseGI GGATG 5 cut(s) 235, 307, 322, 410, 900
BseJI GATNNNNATC 1 cut(s) 899
BseLI CCNNNNNNNGG 2 cut(s) 63, 911
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 2 cut(s) 533, 550
BseNI ACTGG 2 cut(s) 23, 720
BseRI GAGGAG 2 cut(s) 239, 539
BseXI GCAGC 3 cut(s) 217, 665, 764
BsgI GTGCAG 1 cut(s) 606
BshFI GGCC 5 cut(s) 311, 660, 832, 890, 985
BsiHKAI GWGCWC 1 cut(s) 852
BsiHKCI CYCGRG 1 cut(s) 845
BslFI GGGAC 5 cut(s) 135, 201, 397, 457, 617
BslI CCNNNNNNNGG 2 cut(s) 63, 911
BsmAI GTCTC 2 cut(s) 271, 436
BsmBI CGTCTC 2 cut(s) 271, 436
BsmFI GGGAC 5 cut(s) 135, 201, 397, 457, 617
BsmI GAATGC 2 cut(s) 572, 700
BsnI GGCC 5 cut(s) 311, 660, 832, 890, 985
BsoBI CYCGRG 1 cut(s) 845
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 70, 852
Bsp19I CCATGG 3 cut(s) 57, 824, 860
BspACI CCGC 1 cut(s) 158
BspANI GGCC 5 cut(s) 311, 660, 832, 890, 985
BspCNI CTCAG 2 cut(s) 532, 549
BspLI GGNNCC 3 cut(s) 97, 248, 385
BspT104I TTCGAA 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 176
BsrI ACTGG 2 cut(s) 23, 720
BssECI CCNNGG 9 cut(s) 57, 99, 183, 312, 655, 743, 814, 824, 860
BssNI GRCGYC 1 cut(s) 51
BssSI CACGAG 1 cut(s) 8
BssT1I CCWWGG 6 cut(s) 57, 183, 743, 814, 824, 860
Bst2BI CACGAG 1 cut(s) 8
Bst2UI CCWGG 2 cut(s) 240, 313
Bst4CI ACNGT 2 cut(s) 119, 124
Bst6I CTCTTC 1 cut(s) 453
BstACI GRCGYC 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 286, 683
BstDEI CTNAG 2 cut(s) 519, 536
BstDSI CCRYGG 3 cut(s) 57, 824, 860
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 5 cut(s) 235, 307, 322, 410, 900
BstHHI GCGC 1 cut(s) 925
BstMAI GTCTC 2 cut(s) 271, 436
BstMWI GCNNNNNNNGC 2 cut(s) 48, 317
BstNI CCWGG 2 cut(s) 240, 313
BstNSI RCATGY 2 cut(s) 194, 685
BstPAI GACNNNNGTC 1 cut(s) 720
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 238, 311
BstV1I GCAGC 3 cut(s) 217, 665, 764
BstV2I GAAGAC 1 cut(s) 120
BstXI CCANNNNNNTGG 1 cut(s) 744
BsuRI GGCC 5 cut(s) 311, 660, 832, 890, 985
BtgI CCRYGG 3 cut(s) 57, 824, 860
BtsCI GGATG 5 cut(s) 235, 307, 322, 410, 900
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 1 cut(s) 600
Cac8I GCNNGC 2 cut(s) 286, 683
CfoI GCGC 1 cut(s) 925
Cfr13I GGNCC 2 cut(s) 384, 598
CseI GACGC 1 cut(s) 40
Csp6I GTAC 5 cut(s) 22, 120, 127, 198, 943
CviAII CATG 9 cut(s) 58, 191, 280, 562, 682, 809, 825, 861, 971
CviQI GTAC 5 cut(s) 22, 120, 127, 198, 943
DdeI CTNAG 2 cut(s) 519, 536
DraIII CACNNNGTG 1 cut(s) 345
DrdI GACNNNNNNGTC 1 cut(s) 391
DseDI GACNNNNNNGTC 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 830
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
Ecl136II GAGCTC 1 cut(s) 850
Eco130I CCWWGG 6 cut(s) 57, 183, 743, 814, 824, 860
Eco24I GRGCYC 2 cut(s) 70, 852
Eco32I GATATC 1 cut(s) 557
Eco47I GGWCC 2 cut(s) 384, 598
Eco53kI GAGCTC 1 cut(s) 850
Eco88I CYCGRG 1 cut(s) 845
Eco91I GGTNACC 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 850
EcoO65I GGTNACC 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 238, 311
EcoRV GATATC 1 cut(s) 557
EcoT14I CCWWGG 6 cut(s) 57, 183, 743, 814, 824, 860
EcoT22I ATGCAT 1 cut(s) 687
EcoT38I GRGCYC 2 cut(s) 70, 852
ErhI CCWWGG 6 cut(s) 57, 183, 743, 814, 824, 860
Esp3I CGTCTC 2 cut(s) 271, 436
FaeI CATG 9 cut(s) 61, 194, 283, 565, 685, 812, 828, 864, 974
FaqI GGGAC 5 cut(s) 135, 201, 397, 457, 617
FatI CATG 9 cut(s) 57, 190, 279, 561, 681, 808, 824, 860, 970
Fnu4HI GCNGC 3 cut(s) 206, 679, 778
FokI GGATG 5 cut(s) 222, 314, 329, 417, 887
FriOI GRGCYC 2 cut(s) 70, 852
Fsp4HI GCNGC 3 cut(s) 206, 679, 778
FspBI CTAG 2 cut(s) 216, 991
GlaI GCGC 1 cut(s) 924
GluI GCNGC 3 cut(s) 206, 679, 778
HaeIII GGCC 5 cut(s) 311, 660, 832, 890, 985
HgaI GACGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 925
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 9 cut(s) 61, 194, 283, 565, 685, 812, 828, 864, 974
Hin6I GCGC 1 cut(s) 923
HinP1I GCGC 1 cut(s) 923
HinfI GANTC 3 cut(s) 108, 529, 895
HphI GGTGA 2 cut(s) 154, 644
Hpy166II GTNNAC 4 cut(s) 16, 127, 348, 945
Hpy188I TCNGA 2 cut(s) 103, 539
Hpy188III TCNNGA 7 cut(s) 152, 169, 211, 521, 577, 713, 979
Hpy8I GTNNAC 4 cut(s) 16, 127, 348, 945
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 4 cut(s) 82, 86, 146, 743
HpyCH4III ACNGT 2 cut(s) 119, 124
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 8 cut(s) 176, 437, 505, 565, 572, 587, 681, 685
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 317
HpyF3I CTNAG 2 cut(s) 519, 536
HpySE526I ACGT 1 cut(s) 609
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 9 cut(s) 61, 194, 283, 565, 685, 812, 828, 864, 974
HspAI GCGC 1 cut(s) 923
LmnI GCTCC 4 cut(s) 95, 252, 590, 774
Lsp1109I GCAGC 3 cut(s) 217, 665, 764
LweI GCATC 2 cut(s) 145, 307
MaeI CTAG 2 cut(s) 216, 991
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 2 cut(s) 142, 398
MboII GAAGA 5 cut(s) 97, 125, 319, 470, 701
MhlI GDGCHC 2 cut(s) 70, 852
MlsI TGGCCA 1 cut(s) 832
MluCI AATT 4 cut(s) 500, 567, 948, 959
MluNI TGGCCA 1 cut(s) 832
Mox20I TGGCCA 1 cut(s) 832
Mph1103I ATGCAT 1 cut(s) 687
MroXI GAANNNNTTC 1 cut(s) 698
MscI TGGCCA 1 cut(s) 832
MseI TTAA 1 cut(s) 726
Msp20I TGGCCA 1 cut(s) 832
MspR9I CCNGG 2 cut(s) 240, 313
Mva1269I GAATGC 2 cut(s) 572, 700
MvaI CCWGG 2 cut(s) 240, 313
MwoI GCNNNNNNNGC 2 cut(s) 48, 317
NcoI CCATGG 3 cut(s) 57, 824, 860
NlaIII CATG 9 cut(s) 61, 194, 283, 565, 685, 812, 828, 864, 974
NlaIV GGNNCC 3 cut(s) 97, 248, 385
NmeAIII GCCGAG 1 cut(s) 636
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 687
NspI RCATGY 2 cut(s) 194, 685
NspV TTCGAA 1 cut(s) 111
PaeI GCATGC 1 cut(s) 685
PaeR7I CTCGAG 1 cut(s) 845
PciI ACATGT 1 cut(s) 190
PctI GAATGC 2 cut(s) 572, 700
PdmI GAANNNNTTC 1 cut(s) 698
PfeI GAWTC 3 cut(s) 108, 529, 895
PflFI GACNNNGTC 2 cut(s) 29, 611
PflMI CCANNNNNTGG 1 cut(s) 63
PkrI GCNGC 3 cut(s) 207, 680, 779
PscI ACATGT 1 cut(s) 190
PshAI GACNNNNGTC 1 cut(s) 720
PsiI TTATAA 1 cut(s) 932
Psp124BI GAGCTC 1 cut(s) 852
Psp6I CCWGG 2 cut(s) 238, 311
PspEI GGTNACC 1 cut(s) 142
PspGI CCWGG 2 cut(s) 238, 311
PspN4I GGNNCC 3 cut(s) 97, 248, 385
PspPI GGNCC 2 cut(s) 384, 598
PspXI VCTCGAGB 1 cut(s) 845
PsyI GACNNNGTC 2 cut(s) 29, 611
RsaI GTAC 5 cut(s) 23, 121, 128, 199, 944
RsaNI GTAC 5 cut(s) 22, 120, 127, 198, 943
SacI GAGCTC 1 cut(s) 852
SaqAI TTAA 1 cut(s) 726
SatI GCNGC 3 cut(s) 206, 679, 778
Sau96I GGNCC 2 cut(s) 384, 598
ScaI AGTACT 2 cut(s) 121, 199
ScrFI CCNGG 2 cut(s) 240, 313
SduI GDGCHC 2 cut(s) 70, 852
SetI ASST 6 cut(s) 165, 210, 612, 657, 779, 852
SfaNI GCATC 2 cut(s) 145, 307
Sfr274I CTCGAG 1 cut(s) 845
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 2 cut(s) 384, 598
SlaI CTCGAG 1 cut(s) 845
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
SpeI ACTAGT 1 cut(s) 215
SphI GCATGC 1 cut(s) 685
Sse9I AATT 4 cut(s) 500, 567, 948, 959
SsiI CCGC 1 cut(s) 158
SspMI CTAG 2 cut(s) 216, 991
SstI GAGCTC 1 cut(s) 852
StyD4I CCNGG 2 cut(s) 238, 311
StyI CCWWGG 6 cut(s) 57, 183, 743, 814, 824, 860
TaaI ACNGT 2 cut(s) 119, 124
TaiI ACGT 1 cut(s) 612
TaqI TCGA 3 cut(s) 111, 846, 852
TasI AATT 4 cut(s) 500, 567, 948, 959
TatI WGTACW 3 cut(s) 119, 197, 942
TfiI GAWTC 3 cut(s) 108, 529, 895
Tru1I TTAA 1 cut(s) 726
Tru9I TTAA 1 cut(s) 726
TscAI CASTG 1 cut(s) 600
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 3 cut(s) 205, 678, 777
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 224, 319, 797
TspGWI ACGGA 3 cut(s) 417, 620, 828
TspRI CASTG 1 cut(s) 600
Tth111I GACNNNGTC 2 cut(s) 29, 611
Van91I CCANNNNNTGG 1 cut(s) 63
VpaK11BI GGWCC 2 cut(s) 384, 598
XceI RCATGY 2 cut(s) 194, 685
XhoI CTCGAG 1 cut(s) 845
XmnI GAANNNNTTC 1 cut(s) 698
XspI CTAG 2 cut(s) 216, 991
ZrmI AGTACT 2 cut(s) 121, 199
Zsp2I ATGCAT 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.