AT2G47190
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013233
Physical Location & Seq
Forward (+)
19375985 .. 19377543
1559 bp
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UTR
Exon/CDS
Intron
AT2G47190.1

Sequence Viewer

Length: 822 bp
ATGGAAGATTACGAGCGAATAAACTCAAACTCTCCAACACATGAAGAAGATTCTGATGTACGGAAAGGTCCATGGACCGAGGAAGAAGATGCAATCCTAGTCAACTTCGTCTCTATCCATGGCGATGCTCGTTGGAACCACATCGCTCGTTCCTCTGGGCTAAAGCGAACTGGTAAGAGTTGTAGATTAAGATGGCTTAATTACTTACGTCCAGATGTTAGAAGAGGCAACATCACTCTCGAAGAACAATTTATGATCCTCAAACTCCATTCTCTTTGGGGCAATAGGTGGTCGAAGATTGCGCAATATCTACCGGGAAGAACAGATAATGAAATAAAGAATTATTGGAGAACTCGAGTCCAAAAGCAAGCCAAACACCTAAGATGCGATGTTAACAGTAATCTTTTCAAGGAGACTATGAGAAATGTTTGGATGCCGAGATTAGTGGAACGAATCAACGCCCAATCATTACCCACCACGTGTGAACAAGTGGAGTCAATGATCACCGACCCAAGTCAACCAGTTAACGAACCGAGTCCGGTCGAGCCGGGTTTCGTTCAATTCAGCCAGAATCATCATCAGCAATTCGTACCGGCTACGGAATTGTCAGCAACGTCTTCGAATTCTCCGGCTGAGACGTTTTCGGACGTTCGAGGTGGGGTGGTGAACGGGTCAGGTTATGATCCGTCGGGTCAAACGGGTTTCGGAGAGTTCAACGATTGGGGCTGTGTTGGTGGGGACAACATGTGGACTGACGAGGAGAGTTTTTGGTTCTTGCAGGACCAGTTCTGCCCCGATACGACATCGTATTCGTATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

273

Amino Acids

31.45

Weight (kDa)

5.33

Isoelectric Point (pI)

61.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 22 - 69 1.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 25 - 83 4.1e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 75 - 118 1.8e-15 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47190
fragaria_vesca FvH4_1g26720
malus_domestica MD09G1286900.v1.1 MD17G1279200.v1.1
prunus_persica Prupe.3G006300_v2.0.a1
pyrus_communis pycom17g27710
rosa_chinensis RchiOBHm_Chr3g0486901
rosa_laevigata RLG00000023046
rosa_multiflora Rmu_sc0000501.1_g000017 Rmu_sc0003470.1_g000020
rosa_roxburghii Rroxscaffold_6G00395370
rosa_rugosa Rorug03G0228600 Rorug03G0228700
rosa_samantha Rh3AG278000 Rh3BG313800 Rh3CG312200 Rh3DG308500
rosa_wichuraiana Rw3G024680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 303
AclWI GGATC 2 cut(s) 250, 677
AcsI RAATTY 1 cut(s) 622
AcvI CACGTG 1 cut(s) 480
AdeI CACNNNGTG 1 cut(s) 480
AfaI GTAC 2 cut(s) 60, 591
AflIII ACRYGT 2 cut(s) 479, 744
AgsI TTSAA 3 cut(s) 409, 560, 715
Alw26I GTCTC 3 cut(s) 115, 407, 629
AlwI GGATC 2 cut(s) 250, 677
Ama87I CYCGRG 1 cut(s) 354
ApoI RAATTY 1 cut(s) 622
ArsI GACNNNNNNTTYG 1 cut(s) 793
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 3 cut(s) 68, 75, 781
AsuC2I CCSGG 2 cut(s) 315, 549
AsuHPI GGTGA 2 cut(s) 496, 676
AsuII TTCGAA 1 cut(s) 620
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 3 cut(s) 68, 75, 781
BbrPI CACGTG 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 609
BccI CCATC 1 cut(s) 186
BcgI CGANNNNNNTGC 2 cut(s) 600, 634
BclI TGATCA 1 cut(s) 501
BcnI CCSGG 2 cut(s) 315, 549
BcoDI GTCTC 3 cut(s) 115, 407, 629
BfaI CTAG 1 cut(s) 98
Bme1390I CCNGG 2 cut(s) 315, 549
Bme18I GGWCC 3 cut(s) 68, 75, 781
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 3 cut(s) 68, 75, 781
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 2 cut(s) 315, 549
BmsI GCATC 4 cut(s) 79, 115, 374, 423
BoxI GACNNNNGTC 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 620
BpuMI CCSGG 2 cut(s) 315, 549
BsaAI YACGTR 1 cut(s) 480
BsaJI CCNNGG 3 cut(s) 71, 78, 118
BsaWI WCCGGW 1 cut(s) 538
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 3 cut(s) 175, 521, 784
BseDI CCNNGG 3 cut(s) 71, 78, 118
BseGI GGATG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 3 cut(s) 175, 521, 784
BseRI GAGGAG 1 cut(s) 773
Bsh1285I CGRYCG 1 cut(s) 543
BsiEI CGRYCG 1 cut(s) 543
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 5 cut(s) 314, 539, 548, 593, 629
BslFI GGGAC 1 cut(s) 752
BsmAI GTCTC 3 cut(s) 115, 407, 629
BsmBI CGTCTC 2 cut(s) 115, 629
BsmFI GGGAC 1 cut(s) 752
BsoBI CYCGRG 1 cut(s) 354
Bsp119I TTCGAA 1 cut(s) 620
Bsp143I GATC 3 cut(s) 255, 501, 682
Bsp19I CCATGG 2 cut(s) 71, 118
BspCNI CTCAG 1 cut(s) 625
BspLI GGNNCC 1 cut(s) 137
BspPI GGATC 2 cut(s) 250, 677
BspT104I TTCGAA 1 cut(s) 620
BsrFI RCCGGY 1 cut(s) 592
BsrI ACTGG 3 cut(s) 175, 521, 784
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 3 cut(s) 71, 78, 118
BssMI GATC 3 cut(s) 255, 501, 682
BssT1I CCWWGG 2 cut(s) 71, 118
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 217
BstBAI YACGTR 1 cut(s) 480
BstBI TTCGAA 1 cut(s) 620
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 380, 633
BstDSI CCRYGG 2 cut(s) 71, 118
BstF5I GGATG 1 cut(s) 438
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 3 cut(s) 258, 504, 685
BstMAI GTCTC 3 cut(s) 115, 407, 629
BstMBI GATC 3 cut(s) 255, 501, 682
BstMCI CGRYCG 1 cut(s) 543
BstNSI RCATGY 1 cut(s) 748
BstPAI GACNNNNGTC 1 cut(s) 513
BstSCI CCNGG 2 cut(s) 313, 547
BstV2I GAAGAC 1 cut(s) 609
BtgI CCRYGG 2 cut(s) 71, 118
BtgZI GCGATG 3 cut(s) 127, 138, 402
BtsCI GGATG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 369
CfoI GCGC 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 3 cut(s) 68, 75, 781
Csp6I GTAC 2 cut(s) 59, 590
CviAII CATG 4 cut(s) 41, 72, 119, 745
CviJI RGCY 8 cut(s) 160, 196, 371, 547, 567, 596, 632, 726
CviKI_1 RGCY 8 cut(s) 160, 196, 371, 547, 567, 596, 632, 726
CviQI GTAC 2 cut(s) 59, 590
DdeI CTNAG 2 cut(s) 380, 633
DpnI GATC 3 cut(s) 257, 503, 684
DpnII GATC 3 cut(s) 255, 501, 682
DraIII CACNNNGTG 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 71, 118
Eco47I GGWCC 3 cut(s) 68, 75, 781
Eco72I CACGTG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 622
EcoT14I CCWWGG 2 cut(s) 71, 118
ErhI CCWWGG 2 cut(s) 71, 118
Esp3I CGTCTC 2 cut(s) 115, 629
FaeI CATG 4 cut(s) 44, 75, 122, 748
FaiI YATR 8 cut(s) 42, 73, 120, 254, 419, 681, 746, 816
FaqI GGGAC 1 cut(s) 752
FatI CATG 4 cut(s) 40, 71, 118, 744
FbaI TGATCA 1 cut(s) 501
FokI GGATG 1 cut(s) 445
FspBI CTAG 1 cut(s) 98
FspI TGCGCA 1 cut(s) 303
GlaI GCGC 1 cut(s) 303
HapII CCGG 5 cut(s) 314, 539, 548, 593, 629
HhaI GCGC 1 cut(s) 304
Hin1II CATG 4 cut(s) 44, 75, 122, 748
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HincII GTYRAC 4 cut(s) 103, 394, 518, 526
HindII GTYRAC 4 cut(s) 103, 394, 518, 526
HinfI GANTC 6 cut(s) 50, 357, 453, 494, 535, 571
HpaI GTTAAC 2 cut(s) 394, 526
HpaII CCGG 5 cut(s) 314, 539, 548, 593, 629
HphI GGTGA 2 cut(s) 496, 676
Hpy166II GTNNAC 7 cut(s) 103, 394, 485, 518, 526, 667, 750
Hpy188I TCNGA 3 cut(s) 55, 646, 707
Hpy188III TCNNGA 2 cut(s) 212, 239
Hpy8I GTNNAC 7 cut(s) 103, 394, 485, 518, 526, 667, 750
Hpy99I CGWCG 1 cut(s) 691
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 5 cut(s) 208, 479, 614, 638, 648
HpyCH4V TGCA 2 cut(s) 92, 778
HpyF3I CTNAG 2 cut(s) 380, 633
HpySE526I ACGT 5 cut(s) 208, 479, 614, 638, 648
Hsp92II CATG 4 cut(s) 44, 75, 122, 748
HspAI GCGC 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 501
KspAI GTTAAC 2 cut(s) 394, 526
Kzo9I GATC 3 cut(s) 255, 501, 682
LweI GCATC 4 cut(s) 79, 115, 374, 423
MaeI CTAG 1 cut(s) 98
MaeII ACGT 5 cut(s) 208, 479, 614, 638, 648
MalI GATC 3 cut(s) 257, 503, 684
MboI GATC 3 cut(s) 255, 501, 682
MluCI AATT 8 cut(s) 199, 248, 340, 560, 584, 602, 622, 817
MlyI GAGTC 3 cut(s) 366, 503, 544
MmeI TCCRAC 2 cut(s) 59, 113
MnlI CCTC 6 cut(s) 73, 163, 218, 269, 647, 751
MseI TTAA 5 cut(s) 188, 198, 393, 525, 820
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 5 cut(s) 314, 539, 548, 593, 629
MspR9I CCNGG 2 cut(s) 315, 549
NciI CCSGG 2 cut(s) 315, 549
NcoI CCATGG 2 cut(s) 71, 118
NdeII GATC 3 cut(s) 255, 501, 682
NlaIII CATG 4 cut(s) 44, 75, 122, 748
NlaIV GGNNCC 1 cut(s) 137
NmeAIII GCCGAG 1 cut(s) 462
NsbI TGCGCA 1 cut(s) 303
NspI RCATGY 1 cut(s) 748
NspV TTCGAA 1 cut(s) 620
PaeR7I CTCGAG 1 cut(s) 354
PciI ACATGT 1 cut(s) 744
PfeI GAWTC 3 cut(s) 50, 453, 571
PleI GAGTC 3 cut(s) 365, 502, 543
PmaCI CACGTG 1 cut(s) 480
PmlI CACGTG 1 cut(s) 480
PpsI GAGTC 3 cut(s) 365, 502, 543
Ppu21I YACGTR 1 cut(s) 480
PscI ACATGT 1 cut(s) 744
PshAI GACNNNNGTC 1 cut(s) 513
PspCI CACGTG 1 cut(s) 480
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 3 cut(s) 68, 75, 781
PspXI VCTCGAGB 1 cut(s) 354
RsaI GTAC 2 cut(s) 60, 591
RsaNI GTAC 2 cut(s) 59, 590
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 5 cut(s) 188, 198, 393, 525, 820
Sau3AI GATC 3 cut(s) 255, 501, 682
Sau96I GGNCC 3 cut(s) 68, 75, 781
SchI GAGTC 3 cut(s) 366, 503, 544
ScrFI CCNGG 2 cut(s) 315, 549
SfaNI GCATC 4 cut(s) 79, 115, 374, 423
Sfr274I CTCGAG 1 cut(s) 354
SfuI TTCGAA 1 cut(s) 620
SinI GGWCC 3 cut(s) 68, 75, 781
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 8 cut(s) 199, 248, 340, 560, 584, 602, 622, 817
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 313, 547
StyI CCWWGG 2 cut(s) 71, 118
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 5 cut(s) 211, 482, 617, 641, 651
TaqI TCGA 6 cut(s) 240, 293, 355, 543, 620, 652
TaqII GACCGA 1 cut(s) 92
TasI AATT 8 cut(s) 199, 248, 340, 560, 584, 602, 622, 817
TfiI GAWTC 3 cut(s) 50, 453, 571
Tru1I TTAA 5 cut(s) 188, 198, 393, 525, 820
Tru9I TTAA 5 cut(s) 188, 198, 393, 525, 820
TspDTI ATGAA 2 cut(s) 57, 345
TspGWI ACGGA 3 cut(s) 76, 614, 675
VpaK11BI GGWCC 3 cut(s) 68, 75, 781
XapI RAATTY 1 cut(s) 622
XceI RCATGY 1 cut(s) 748
XhoI CTCGAG 1 cut(s) 354
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.