transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47190 |
| fragaria_vesca | FvH4_1g26720 |
| malus_domestica | MD09G1286900.v1.1 MD17G1279200.v1.1 |
| prunus_persica | Prupe.3G006300_v2.0.a1 |
| pyrus_communis | pycom17g27710 |
| rosa_chinensis | RchiOBHm_Chr3g0486901 |
| rosa_laevigata | RLG00000023046 |
| rosa_multiflora | Rmu_sc0000501.1_g000017 Rmu_sc0003470.1_g000020 |
| rosa_roxburghii | Rroxscaffold_6G00395370 |
| rosa_rugosa | Rorug03G0228600 Rorug03G0228700 |
| rosa_samantha | Rh3AG278000 Rh3BG313800 Rh3CG312200 Rh3DG308500 |
| rosa_wichuraiana | Rw3G024680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1557 |
| Acc16I | TGCGCA | 1 cut(s) | 819 |
| Acc36I | ACCTGC | 3 cut(s) | 1222, 1393, 1557 |
| AccI | GTMKAC | 1 cut(s) | 1266 |
| AciI | CCGC | 5 cut(s) | 28, 977, 1208, 2093, 2281 |
| AclWI | GGATC | 2 cut(s) | 1003, 1015 |
| AcoI | YGGCCR | 1 cut(s) | 381 |
| AcsI | RAATTY | 4 cut(s) | 17, 548, 559, 719 |
| AcuI | CTGAAG | 3 cut(s) | 1347, 1671, 2376 |
| AfaI | GTAC | 5 cut(s) | 336, 347, 506, 1121, 1374 |
| AfeI | AGCGCT | 1 cut(s) | 357 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 691, 1231, 1753, 1754, 2179 |
| AflIII | ACRYGT | 2 cut(s) | 2163, 2252 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2320 |
| AhlI | ACTAGT | 1 cut(s) | 2285 |
| AjnI | CCWGG | 2 cut(s) | 657, 1503 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1577, 1609 |
| Alw21I | GWGCWC | 3 cut(s) | 1371, 1800, 2229 |
| Alw26I | GTCTC | 6 cut(s) | 86, 875, 1432, 1762, 1944, 2180 |
| AlwI | GGATC | 2 cut(s) | 1003, 1015 |
| Ama87I | CYCGRG | 1 cut(s) | 1377 |
| Aor51HI | AGCGCT | 1 cut(s) | 357 |
| AoxI | GGCC | 8 cut(s) | 25, 381, 438, 1407, 1974, 2001, 2181, 2399 |
| ApaI | GGGCCC | 2 cut(s) | 1411, 1978 |
| ApeKI | GCWGC | 9 cut(s) | 667, 781, 1211, 1534, 1662, 1831, 1853, 1856, 1964 |
| ApoI | RAATTY | 4 cut(s) | 17, 548, 559, 719 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1242 |
| AspLEI | GCGC | 3 cut(s) | 315, 358, 820 |
| AspS9I | GGNCC | 9 cut(s) | 25, 1382, 1407, 1408, 1931, 1974, 1975, 2103, 2242 |
| AsuC2I | CCSGG | 1 cut(s) | 322 |
| AsuHPI | GGTGA | 9 cut(s) | 271, 319, 1319, 1538, 1556, 1894, 2000, 2107, 2305 |
| AsuII | TTCGAA | 1 cut(s) | 14 |
| AvaI | CYCGRG | 1 cut(s) | 1377 |
| AvaII | GGWCC | 4 cut(s) | 1382, 1931, 2103, 2242 |
| AxyI | CCTNAGG | 2 cut(s) | 1226, 2042 |
| BaeGI | GKGCMC | 3 cut(s) | 882, 1411, 1978 |
| BanII | GRGCYC | 5 cut(s) | 1371, 1411, 1800, 1978, 2229 |
| BauI | CACGAG | 1 cut(s) | 1467 |
| BbsI | GAAGAC | 1 cut(s) | 2257 |
| Bbv12I | GWGCWC | 3 cut(s) | 1371, 1800, 2229 |
| BbvCI | CCTCAGC | 1 cut(s) | 2360 |
| BbvI | GCAGC | 9 cut(s) | 679, 793, 1198, 1521, 1649, 1818, 1865, 1868, 1976 |
| BccI | CCATC | 2 cut(s) | 611, 756 |
| BciT130I | CCWGG | 2 cut(s) | 659, 1505 |
| BciVI | GTATCC | 1 cut(s) | 697 |
| BclI | TGATCA | 2 cut(s) | 37, 2211 |
| BcnI | CCSGG | 1 cut(s) | 322 |
| BcoDI | GTCTC | 6 cut(s) | 86, 875, 1432, 1762, 1944, 2180 |
| BcuI | ACTAGT | 1 cut(s) | 2285 |
| BfaI | CTAG | 9 cut(s) | 99, 317, 392, 636, 773, 1100, 1286, 1802, 2286 |
| BfmI | CTRYAG | 1 cut(s) | 519 |
| BfoI | RGCGCY | 1 cut(s) | 359 |
| BfuAI | ACCTGC | 3 cut(s) | 1222, 1393, 1557 |
| BfuI | GTATCC | 1 cut(s) | 697 |
| BlpI | GCTNAGC | 2 cut(s) | 192, 1290 |
| Bme1390I | CCNGG | 3 cut(s) | 322, 659, 1505 |
| Bme18I | GGWCC | 4 cut(s) | 1382, 1931, 2103, 2242 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2320 |
| BmeT110I | CYCGRG | 1 cut(s) | 1377 |
| BmgT120I | GGNCC | 9 cut(s) | 25, 1382, 1407, 1408, 1931, 1974, 1975, 2103, 2242 |
| BmiI | GGNNCC | 4 cut(s) | 26, 1383, 1409, 1976 |
| BmrFI | CCNGG | 3 cut(s) | 322, 659, 1505 |
| BmsI | GCATC | 7 cut(s) | 300, 394, 574, 853, 1327, 1367, 2058 |
| BoxI | GACNNNNGTC | 2 cut(s) | 687, 1328 |
| BpiI | GAAGAC | 1 cut(s) | 2257 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 137, 169, 670, 702 |
| BpmI | CTGGAG | 2 cut(s) | 1487, 2084 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1365, 2360 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 192, 1290 |
| Bpu14I | TTCGAA | 1 cut(s) | 14 |
| BpuEI | CTTGAG | 8 cut(s) | 320, 449, 848, 1242, 1784, 1814, 1931, 2288 |
| BpuMI | CCSGG | 1 cut(s) | 322 |
| BsaAI | YACGTR | 1 cut(s) | 699 |
| BsaI | GGTCTC | 3 cut(s) | 875, 1762, 1944 |
| BsaJI | CCNNGG | 4 cut(s) | 384, 435, 874, 1376 |
| BsaWI | WCCGGW | 1 cut(s) | 1899 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2389, 2419 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 691, 1231, 1753, 1754, 2179 |
| Bse21I | CCTNAGG | 2 cut(s) | 1226, 2042 |
| Bse3DI | GCAATG | 1 cut(s) | 1479 |
| BseBI | CCWGG | 2 cut(s) | 659, 1505 |
| BseDI | CCNNGG | 4 cut(s) | 384, 435, 874, 1376 |
| BseGI | GGATG | 4 cut(s) | 409, 957, 1513, 1580 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 691, 1231, 1753, 1754, 2179 |
| BseMI | GCAATG | 1 cut(s) | 1479 |
| BseRI | GAGGAG | 5 cut(s) | 104, 218, 386, 658, 2030 |
| BseSI | GKGCMC | 3 cut(s) | 882, 1411, 1978 |
| BseXI | GCAGC | 9 cut(s) | 679, 793, 1198, 1521, 1649, 1818, 1865, 1868, 1976 |
| BsgI | GTGCAG | 1 cut(s) | 932 |
| BshFI | GGCC | 8 cut(s) | 27, 383, 440, 1409, 1976, 2003, 2183, 2401 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1371, 1800, 2229 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1377 |
| BsiSI | CCGG | 2 cut(s) | 322, 1900 |
| BslFI | GGGAC | 3 cut(s) | 1036, 1395, 1705 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 691, 1231, 1753, 1754, 2179 |
| BsmAI | GTCTC | 6 cut(s) | 86, 875, 1432, 1762, 1944, 2180 |
| BsmBI | CGTCTC | 2 cut(s) | 86, 1432 |
| BsmFI | GGGAC | 3 cut(s) | 1036, 1395, 1705 |
| BsnI | GGCC | 8 cut(s) | 27, 383, 440, 1409, 1976, 2003, 2183, 2401 |
| Bso31I | GGTCTC | 3 cut(s) | 875, 1762, 1944 |
| BsoBI | CYCGRG | 1 cut(s) | 1377 |
| Bsp119I | TTCGAA | 1 cut(s) | 14 |
| Bsp120I | GGGCCC | 2 cut(s) | 1407, 1974 |
| Bsp1286I | GDGCHC | 6 cut(s) | 882, 1371, 1411, 1800, 1978, 2229 |
| Bsp1407I | TGTACA | 1 cut(s) | 345 |
| Bsp143I | GATC | 4 cut(s) | 37, 995, 1007, 2211 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 192, 1290 |
| Bsp19I | CCATGG | 1 cut(s) | 874 |
| BspACI | CCGC | 5 cut(s) | 28, 977, 1208, 2093, 2281 |
| BspANI | GGCC | 8 cut(s) | 27, 383, 440, 1409, 1976, 2003, 2183, 2401 |
| BspHI | TCATGA | 3 cut(s) | 675, 1735, 2214 |
| BspLI | GGNNCC | 4 cut(s) | 26, 1383, 1409, 1976 |
| BspMI | ACCTGC | 3 cut(s) | 1222, 1393, 1557 |
| BspPI | GGATC | 2 cut(s) | 1003, 1015 |
| BspQI | GCTCTTC | 2 cut(s) | 522, 2217 |
| BspT104I | TTCGAA | 1 cut(s) | 14 |
| BspTNI | GGTCTC | 3 cut(s) | 875, 1762, 1944 |
| BsrDI | GCAATG | 1 cut(s) | 1479 |
| BsrGI | TGTACA | 1 cut(s) | 345 |
| BssECI | CCNNGG | 4 cut(s) | 384, 435, 874, 1376 |
| BssMI | GATC | 4 cut(s) | 37, 995, 1007, 2211 |
| BssSI | CACGAG | 1 cut(s) | 1467 |
| BssT1I | CCWWGG | 2 cut(s) | 435, 874 |
| Bst2BI | CACGAG | 1 cut(s) | 1467 |
| Bst2UI | CCWGG | 2 cut(s) | 659, 1505 |
| Bst4CI | ACNGT | 4 cut(s) | 220, 709, 1559, 1945 |
| Bst6I | CTCTTC | 6 cut(s) | 522, 534, 1985, 2028, 2217, 2424 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 803, 919, 1355 |
| BstAUI | TGTACA | 1 cut(s) | 345 |
| BstBAI | YACGTR | 1 cut(s) | 699 |
| BstBI | TTCGAA | 1 cut(s) | 14 |
| BstC8I | GCNNGC | 1 cut(s) | 266 |
| BstDSI | CCRYGG | 1 cut(s) | 874 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1229, 2177 |
| BstF5I | GGATG | 4 cut(s) | 409, 957, 1513, 1580 |
| BstH2I | RGCGCY | 1 cut(s) | 359 |
| BstHHI | GCGC | 3 cut(s) | 315, 358, 820 |
| BstKTI | GATC | 4 cut(s) | 40, 998, 1010, 2214 |
| BstMAI | GTCTC | 6 cut(s) | 86, 875, 1432, 1762, 1944, 2180 |
| BstMBI | GATC | 4 cut(s) | 37, 995, 1007, 2211 |
| BstNI | CCWGG | 2 cut(s) | 659, 1505 |
| BstNSI | RCATGY | 3 cut(s) | 886, 896, 2167 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 687, 1328 |
| BstSCI | CCNGG | 3 cut(s) | 320, 657, 1503 |
| BstSFI | CTRYAG | 1 cut(s) | 519 |
| BstSLI | GKGCMC | 3 cut(s) | 882, 1411, 1978 |
| BstV1I | GCAGC | 9 cut(s) | 679, 793, 1198, 1521, 1649, 1818, 1865, 1868, 1976 |
| BstV2I | GAAGAC | 1 cut(s) | 2257 |
| BstX2I | RGATCY | 2 cut(s) | 995, 1007 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1834 |
| BstYI | RGATCY | 2 cut(s) | 995, 1007 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1226, 2042 |
| BsuI | GTATCC | 1 cut(s) | 697 |
| BsuRI | GGCC | 8 cut(s) | 27, 383, 440, 1409, 1976, 2003, 2183, 2401 |
| BtgI | CCRYGG | 1 cut(s) | 874 |
| BtsCI | GGATG | 4 cut(s) | 409, 957, 1513, 1580 |
| BtsI | GCAGTG | 1 cut(s) | 1815 |
| BtsIMutI | CAGTG | 3 cut(s) | 1042, 1113, 1815 |
| BveI | ACCTGC | 3 cut(s) | 1222, 1393, 1557 |
| Cac8I | GCNNGC | 1 cut(s) | 266 |
| CciI | TCATGA | 3 cut(s) | 675, 1735, 2214 |
| CfoI | GCGC | 3 cut(s) | 315, 358, 820 |
| Cfr13I | GGNCC | 9 cut(s) | 25, 1382, 1407, 1408, 1931, 1974, 1975, 2103, 2242 |
| Csp6I | GTAC | 5 cut(s) | 335, 346, 505, 1120, 1373 |
| CviQI | GTAC | 5 cut(s) | 335, 346, 505, 1120, 1373 |
| DpnI | GATC | 4 cut(s) | 39, 997, 1009, 2213 |
| DpnII | GATC | 4 cut(s) | 37, 995, 1007, 2211 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2320 |
| EaeI | YGGCCR | 1 cut(s) | 381 |
| Eam1104I | CTCTTC | 6 cut(s) | 522, 534, 1985, 2028, 2217, 2424 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2320 |
| EarI | CTCTTC | 6 cut(s) | 522, 534, 1985, 2028, 2217, 2424 |
| EciI | GGCGGA | 1 cut(s) | 992 |
| Ecl136II | GAGCTC | 3 cut(s) | 1369, 1798, 2227 |
| Eco130I | CCWWGG | 2 cut(s) | 435, 874 |
| Eco147I | AGGCCT | 2 cut(s) | 440, 2003 |
| Eco24I | GRGCYC | 5 cut(s) | 1371, 1411, 1800, 1978, 2229 |
| Eco31I | GGTCTC | 3 cut(s) | 875, 1762, 1944 |
| Eco32I | GATATC | 1 cut(s) | 1733 |
| Eco47I | GGWCC | 4 cut(s) | 1382, 1931, 2103, 2242 |
| Eco47III | AGCGCT | 1 cut(s) | 357 |
| Eco53kI | GAGCTC | 3 cut(s) | 1369, 1798, 2227 |
| Eco57I | CTGAAG | 3 cut(s) | 1347, 1671, 2376 |
| Eco81I | CCTNAGG | 2 cut(s) | 1226, 2042 |
| Eco88I | CYCGRG | 1 cut(s) | 1377 |
| EcoICRI | GAGCTC | 3 cut(s) | 1369, 1798, 2227 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1229, 2177 |
| EcoO109I | RGGNCCY | 7 cut(s) | 1382, 1407, 1408, 1931, 1974, 1975, 2103 |
| EcoRII | CCWGG | 2 cut(s) | 657, 1503 |
| EcoRV | GATATC | 1 cut(s) | 1733 |
| EcoT14I | CCWWGG | 2 cut(s) | 435, 874 |
| EcoT38I | GRGCYC | 5 cut(s) | 1371, 1411, 1800, 1978, 2229 |
| ErhI | CCWWGG | 2 cut(s) | 435, 874 |
| Esp3I | CGTCTC | 2 cut(s) | 86, 1432 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 516, 548, 2374, 2406 |
| FaqI | GGGAC | 3 cut(s) | 1036, 1395, 1705 |
| FauNDI | CATATG | 2 cut(s) | 1569, 1779 |
| FbaI | TGATCA | 2 cut(s) | 37, 2211 |
| FblI | GTMKAC | 1 cut(s) | 1266 |
| FokI | GGATG | 4 cut(s) | 416, 944, 1520, 1567 |
| FriOI | GRGCYC | 5 cut(s) | 1371, 1411, 1800, 1978, 2229 |
| FspBI | CTAG | 9 cut(s) | 99, 317, 392, 636, 773, 1100, 1286, 1802, 2286 |
| FspI | TGCGCA | 1 cut(s) | 819 |
| GlaI | GCGC | 3 cut(s) | 314, 357, 819 |
| GsuI | CTGGAG | 2 cut(s) | 1487, 2084 |
| HaeII | RGCGCY | 1 cut(s) | 359 |
| HaeIII | GGCC | 8 cut(s) | 27, 383, 440, 1409, 1976, 2003, 2183, 2401 |
| HapII | CCGG | 2 cut(s) | 322, 1900 |
| HhaI | GCGC | 3 cut(s) | 315, 358, 820 |
| Hin6I | GCGC | 3 cut(s) | 313, 356, 818 |
| HinP1I | GCGC | 3 cut(s) | 313, 356, 818 |
| HincII | GTYRAC | 4 cut(s) | 223, 712, 970, 2314 |
| HindII | GTYRAC | 4 cut(s) | 223, 712, 970, 2314 |
| HindIII | AAGCTT | 2 cut(s) | 650, 824 |
| HpaII | CCGG | 2 cut(s) | 322, 1900 |
| HphI | GGTGA | 9 cut(s) | 271, 319, 1319, 1538, 1556, 1894, 2000, 2107, 2305 |
| Hpy166II | GTNNAC | 5 cut(s) | 223, 712, 970, 1267, 2314 |
| Hpy8I | GTNNAC | 5 cut(s) | 223, 712, 970, 1267, 2314 |
| HpyAV | CCTTC | 7 cut(s) | 298, 741, 745, 1253, 1646, 1690, 2400 |
| HpyCH4III | ACNGT | 4 cut(s) | 220, 709, 1559, 1945 |
| HpyCH4IV | ACGT | 2 cut(s) | 698, 2254 |
| HpySE526I | ACGT | 2 cut(s) | 698, 2254 |
| HspAI | GCGC | 3 cut(s) | 313, 356, 818 |
| Ksp22I | TGATCA | 2 cut(s) | 37, 2211 |
| Kzo9I | GATC | 4 cut(s) | 37, 995, 1007, 2211 |
| LguI | GCTCTTC | 2 cut(s) | 522, 2217 |
| LmnI | GCTCC | 4 cut(s) | 1186, 1803, 2043, 2232 |
| Lsp1109I | GCAGC | 9 cut(s) | 679, 793, 1198, 1521, 1649, 1818, 1865, 1868, 1976 |
| LweI | GCATC | 7 cut(s) | 300, 394, 574, 853, 1327, 1367, 2058 |
| MaeI | CTAG | 9 cut(s) | 99, 317, 392, 636, 773, 1100, 1286, 1802, 2286 |
| MaeII | ACGT | 2 cut(s) | 698, 2254 |
| MaeIII | GTNAC | 8 cut(s) | 44, 680, 694, 1321, 1526, 1544, 1988, 2155 |
| MalI | GATC | 4 cut(s) | 39, 997, 1009, 2213 |
| MboI | GATC | 4 cut(s) | 37, 995, 1007, 2211 |
| MflI | RGATCY | 2 cut(s) | 995, 1007 |
| MhlI | GDGCHC | 6 cut(s) | 882, 1371, 1411, 1800, 1978, 2229 |
| MlyI | GAGTC | 7 cut(s) | 266, 805, 1105, 1125, 1552, 1768, 2182 |
| MmeI | TCCRAC | 2 cut(s) | 348, 1174 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1242 |
| MseI | TTAA | 4 cut(s) | 105, 177, 2141, 2381 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1900 |
| MspI | CCGG | 2 cut(s) | 322, 1900 |
| MspR9I | CCNGG | 3 cut(s) | 322, 659, 1505 |
| MvaI | CCWGG | 2 cut(s) | 659, 1505 |
| NciI | CCSGG | 1 cut(s) | 322 |
| NcoI | CCATGG | 1 cut(s) | 874 |
| NdeI | CATATG | 2 cut(s) | 1569, 1779 |
| NdeII | GATC | 4 cut(s) | 37, 995, 1007, 2211 |
| NlaIV | GGNNCC | 4 cut(s) | 26, 1383, 1409, 1976 |
| NmeAIII | GCCGAG | 3 cut(s) | 409, 2209, 2427 |
| NmuCI | GTSAC | 6 cut(s) | 44, 680, 1321, 1544, 1988, 2155 |
| NsbI | TGCGCA | 1 cut(s) | 819 |
| NspI | RCATGY | 3 cut(s) | 886, 896, 2167 |
| NspV | TTCGAA | 1 cut(s) | 14 |
| PagI | TCATGA | 3 cut(s) | 675, 1735, 2214 |
| PaqCI | CACCTGC | 1 cut(s) | 1557 |
| PceI | AGGCCT | 2 cut(s) | 440, 2003 |
| PciI | ACATGT | 1 cut(s) | 2163 |
| PciSI | GCTCTTC | 2 cut(s) | 522, 2217 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1242 |
| PfeI | GAWTC | 5 cut(s) | 59, 198, 496, 514, 2047 |
| PfoI | TCCNGGA | 2 cut(s) | 657, 1503 |
| PleI | GAGTC | 7 cut(s) | 266, 805, 1104, 1125, 1551, 1767, 2182 |
| PpsI | GAGTC | 7 cut(s) | 266, 805, 1104, 1125, 1551, 1767, 2182 |
| Ppu21I | YACGTR | 1 cut(s) | 699 |
| PpuMI | RGGWCCY | 3 cut(s) | 1382, 1931, 2103 |
| PscI | ACATGT | 1 cut(s) | 2163 |
| PshAI | GACNNNNGTC | 2 cut(s) | 687, 1328 |
| Psp124BI | GAGCTC | 3 cut(s) | 1371, 1800, 2229 |
| Psp5II | RGGWCCY | 3 cut(s) | 1382, 1931, 2103 |
| Psp6I | CCWGG | 2 cut(s) | 657, 1503 |
| PspGI | CCWGG | 2 cut(s) | 657, 1503 |
| PspN4I | GGNNCC | 4 cut(s) | 26, 1383, 1409, 1976 |
| PspOMI | GGGCCC | 2 cut(s) | 1407, 1974 |
| PspPI | GGNCC | 9 cut(s) | 25, 1382, 1407, 1408, 1931, 1974, 1975, 2103, 2242 |
| PspPPI | RGGWCCY | 3 cut(s) | 1382, 1931, 2103 |
| PsuI | RGATCY | 2 cut(s) | 995, 1007 |
| RsaI | GTAC | 5 cut(s) | 336, 347, 506, 1121, 1374 |
| RsaNI | GTAC | 5 cut(s) | 335, 346, 505, 1120, 1373 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1900 |
| SacI | GAGCTC | 3 cut(s) | 1371, 1800, 2229 |
| SapI | GCTCTTC | 2 cut(s) | 522, 2217 |
| SaqAI | TTAA | 4 cut(s) | 105, 177, 2141, 2381 |
| Sau3AI | GATC | 4 cut(s) | 37, 995, 1007, 2211 |
| Sau96I | GGNCC | 9 cut(s) | 25, 1382, 1407, 1408, 1931, 1974, 1975, 2103, 2242 |
| SchI | GAGTC | 7 cut(s) | 266, 805, 1105, 1125, 1552, 1768, 2182 |
| ScrFI | CCNGG | 3 cut(s) | 322, 659, 1505 |
| SduI | GDGCHC | 6 cut(s) | 882, 1371, 1411, 1800, 1978, 2229 |
| SfaNI | GCATC | 7 cut(s) | 300, 394, 574, 853, 1327, 1367, 2058 |
| SfcI | CTRYAG | 1 cut(s) | 519 |
| SfuI | TTCGAA | 1 cut(s) | 14 |
| SinI | GGWCC | 4 cut(s) | 1382, 1931, 2103, 2242 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1900 |
| SmlI | CTYRAG | 8 cut(s) | 299, 464, 827, 1257, 1763, 1793, 1910, 2303 |
| SmoI | CTYRAG | 8 cut(s) | 299, 464, 827, 1257, 1763, 1793, 1910, 2303 |
| SpeI | ACTAGT | 1 cut(s) | 2285 |
| SseBI | AGGCCT | 2 cut(s) | 440, 2003 |
| SsiI | CCGC | 5 cut(s) | 28, 977, 1208, 2093, 2281 |
| SspI | AATATT | 1 cut(s) | 1181 |
| SspMI | CTAG | 9 cut(s) | 99, 317, 392, 636, 773, 1100, 1286, 1802, 2286 |
| SstI | GAGCTC | 3 cut(s) | 1371, 1800, 2229 |
| StuI | AGGCCT | 2 cut(s) | 440, 2003 |
| StyD4I | CCNGG | 3 cut(s) | 320, 657, 1503 |
| StyI | CCWWGG | 2 cut(s) | 435, 874 |
| TaaI | ACNGT | 4 cut(s) | 220, 709, 1559, 1945 |
| TaiI | ACGT | 2 cut(s) | 701, 2257 |
| TaqI | TCGA | 4 cut(s) | 8, 14, 201, 449 |
| TaqII | GACCGA | 1 cut(s) | 2174 |
| TatI | WGTACW | 3 cut(s) | 345, 504, 1119 |
| TauI | GCSGC | 3 cut(s) | 30, 1211, 2096 |
| TfiI | GAWTC | 5 cut(s) | 59, 198, 496, 514, 2047 |
| Tru1I | TTAA | 4 cut(s) | 105, 177, 2141, 2381 |
| Tru9I | TTAA | 4 cut(s) | 105, 177, 2141, 2381 |
| TscAI | CASTG | 3 cut(s) | 1042, 1120, 1815 |
| TseFI | GTSAC | 6 cut(s) | 44, 680, 1321, 1544, 1988, 2155 |
| TseI | GCWGC | 9 cut(s) | 667, 781, 1211, 1534, 1662, 1831, 1853, 1856, 1964 |
| Tsp45I | GTSAC | 6 cut(s) | 44, 680, 1321, 1544, 1988, 2155 |
| TspDTI | ATGAA | 9 cut(s) | 302, 467, 664, 1423, 1569, 1915, 2015, 2231, 2358 |
| TspGWI | ACGGA | 2 cut(s) | 950, 2115 |
| TspRI | CASTG | 3 cut(s) | 1042, 1120, 1815 |
| VpaK11BI | GGWCC | 4 cut(s) | 1382, 1931, 2103, 2242 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1229, 2177 |
| XapI | RAATTY | 4 cut(s) | 17, 548, 559, 719 |
| XbaI | TCTAGA | 1 cut(s) | 1099 |
| XceI | RCATGY | 3 cut(s) | 886, 896, 2167 |
| XmiI | GTMKAC | 1 cut(s) | 1266 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1242 |
| XspI | CTAG | 9 cut(s) | 99, 317, 392, 636, 773, 1100, 1286, 1802, 2286 |