RchiOBHm_Chr3g0486901
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0013233
Physical Location & Seq
Forward (+)
33970197 .. 33971347
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45135

Sequence Viewer

Length: 918 bp
ATGGATGTTGATCAGTACTTACTGAGAGGTTATACTTCATCTGTAACTCATGAGTTACCAAGCTGTGATCCAGAAGATGATCTGCGAAAAGGGCCATGGACAGTTGAGGAAGACTCCATTCTCATGGAGTATATCAACACTCACGGCGAGGGCCGGTGGAATTCACTGGCCGGAAACTCGGGCCTGAAACGAAGCGGCAAAAGCTGCAGACTGAGATGGTTGAACTACTTGCGCCCAAATGTTCGACGTGGAAATATCACCCTCCAAGAACAGCTTCTGATTCTTCAACTTCATTCTCGCTGGGGCAACAGGTGGTCGAAGATAGCGGAATACTTGCCGGGAAGAACAGACAATGAGATAAAAAACTACTGGAGAACAAGAGTCCAAAAGCAAGCAAAGCAGCTCAACTGTGACGTCAACAGCAAGCAATTCCAGGACGCCATGCGTTACGTATGGATTCCGCGCTTAATGGAACGGATCCGGGCCTCATCCGATTCTACTGTGTTATCGGGTCAACCCACGGAAACCGCCACCTCCACTGCATTTACACCACCAGATGACTACTGCCTCACTGACCATAGTAATACGGCGGCTGCTGGGTCTTCTCACTACTGGATTGACCCGAACTACCTGCCCGAGGCGTCTGCAACTTCGTCCGGCTCAACGGAACTTCAAGATTGGTTGAATATTCCCGAGCCTACCAGTACTGAATTGAGTGAACTCAACTGCTATCCAATGAACGGGCAATATTATTCTTCAACAAACGGGTCGGGTTGTTATCAAGATGGTTCAGAAATTCAAGGTTCCGATCATATAGAAAGCAGCAACAGTTGGTCAACTCCCGGTGGGGACTTGGTGGAGAATTTATGGAATGAAGAGAATATATGGTTCTTGCAACAACAGCTTAATAGCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

305

Amino Acids

34.77

Weight (kDa)

4.88

Isoelectric Point (pI)

63.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 30 - 77 7.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 33 - 90 8e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 83 - 126 8.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 87 - 134 4.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47190
fragaria_vesca FvH4_1g26720
malus_domestica MD09G1286900.v1.1 MD17G1279200.v1.1
prunus_persica Prupe.3G006300_v2.0.a1
pyrus_communis pycom17g27710
rosa_chinensis RchiOBHm_Chr3g0486901
rosa_laevigata RLG00000023046
rosa_multiflora Rmu_sc0000501.1_g000017 Rmu_sc0003470.1_g000020
rosa_roxburghii Rroxscaffold_6G00395370
rosa_rugosa Rorug03G0228600 Rorug03G0228700
rosa_samantha Rh3AG278000 Rh3BG313800 Rh3CG312200 Rh3DG308500
rosa_wichuraiana Rw3G024680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 417
Acc36I ACCTGC 1 cut(s) 639
AccII CGCG 1 cut(s) 463
AciI CCGC 5 cut(s) 195, 326, 461, 528, 590
AclWI GGATC 3 cut(s) 62, 472, 485
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 3 cut(s) 160, 795, 862
AcyI GRCGYC 3 cut(s) 414, 438, 641
AfaI GTAC 2 cut(s) 17, 706
AfiI CCNNNNNNNGG 2 cut(s) 637, 740
AgsI TTSAA 6 cut(s) 223, 287, 674, 685, 759, 800
AjiI CACGTC 1 cut(s) 248
AjnI CCWGG 1 cut(s) 432
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 5 cut(s) 63, 204, 274, 403, 904
AluI AGCT 5 cut(s) 63, 204, 274, 403, 904
AlwI GGATC 3 cut(s) 62, 472, 485
AlwNI CAGNNNCTG 1 cut(s) 277
Ama87I CYCGRG 3 cut(s) 178, 635, 692
AoxI GGCC 5 cut(s) 92, 151, 168, 181, 483
ApeKI GCWGC 4 cut(s) 204, 400, 593, 822
ApoI RAATTY 3 cut(s) 160, 795, 862
Asp700I GAANNNNTTC 1 cut(s) 273
AspLEI GCGC 2 cut(s) 234, 465
AspS9I GGNCC 4 cut(s) 92, 151, 181, 483
AsuC2I CCSGG 3 cut(s) 339, 482, 843
AsuHPI GGTGA 1 cut(s) 250
AvaI CYCGRG 3 cut(s) 178, 635, 692
BamHI GGATCC 1 cut(s) 477
BbsI GAAGAC 2 cut(s) 117, 594
BbvI GCAGC 4 cut(s) 191, 412, 580, 834
BccI CCATC 2 cut(s) 210, 779
BceAI ACGGC 2 cut(s) 160, 603
BcgI CGANNNNNNTGC 4 cut(s) 613, 626, 647, 660
BciT130I CCWGG 1 cut(s) 434
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 3 cut(s) 339, 482, 843
BfmI CTRYAG 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 639
BisI GCNGC 6 cut(s) 196, 205, 401, 591, 594, 823
BlsI GCNGC 6 cut(s) 197, 206, 402, 592, 595, 824
BmcAI AGTACT 2 cut(s) 17, 706
Bme1390I CCNGG 4 cut(s) 339, 434, 482, 843
BmeT110I CYCGRG 3 cut(s) 178, 635, 692
BmgBI CACGTC 1 cut(s) 248
BmgT120I GGNCC 4 cut(s) 92, 151, 181, 483
BmiI GGNNCC 2 cut(s) 479, 805
BmrFI CCNGG 4 cut(s) 339, 434, 482, 843
BpiI GAAGAC 2 cut(s) 117, 594
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 1 cut(s) 391
BpuMI CCSGG 3 cut(s) 339, 482, 843
BsaAI YACGTR 1 cut(s) 451
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 3 cut(s) 414, 438, 641
BsaJI CCNNGG 3 cut(s) 95, 519, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 637, 740
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 4 cut(s) 171, 374, 617, 702
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 3 cut(s) 95, 519, 636
BseGI GGATG 2 cut(s) 10, 488
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 637, 740
BseMII CTCAG 2 cut(s) 14, 203
BseNI ACTGG 4 cut(s) 171, 374, 617, 702
BseXI GCAGC 4 cut(s) 191, 412, 580, 834
BseYI CCCAGC 2 cut(s) 300, 596
Bsh1236I CGCG 1 cut(s) 463
BshFI GGCC 5 cut(s) 94, 153, 170, 183, 485
BsiHKCI CYCGRG 3 cut(s) 178, 635, 692
BsiSI CCGG 6 cut(s) 154, 171, 338, 481, 657, 843
BslFI GGGAC 1 cut(s) 863
BslI CCNNNNNNNGG 2 cut(s) 637, 740
BsmFI GGGAC 1 cut(s) 863
BsnI GGCC 5 cut(s) 94, 153, 170, 183, 485
BsoBI CYCGRG 3 cut(s) 178, 635, 692
Bsp143I GATC 5 cut(s) 10, 67, 79, 477, 808
Bsp19I CCATGG 1 cut(s) 95
BspACI CCGC 5 cut(s) 195, 326, 461, 528, 590
BspANI GGCC 5 cut(s) 94, 153, 170, 183, 485
BspCNI CTCAG 2 cut(s) 15, 204
BspFNI CGCG 1 cut(s) 463
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 479, 805
BspMAI CTGCAG 1 cut(s) 209
BspMI ACCTGC 1 cut(s) 639
BspPI GGATC 3 cut(s) 62, 472, 485
BsrFI RCCGGY 1 cut(s) 153
BsrI ACTGG 4 cut(s) 171, 374, 617, 702
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 3 cut(s) 95, 519, 636
BssMI GATC 5 cut(s) 10, 67, 79, 477, 808
BssNI GRCGYC 3 cut(s) 414, 438, 641
BssT1I CCWWGG 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 4 cut(s) 103, 410, 502, 830
Bst6I CTCTTC 1 cut(s) 870
BstACI GRCGYC 3 cut(s) 414, 438, 641
BstAPI GCANNNNNTGC 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 2 cut(s) 393, 425
BstDEI CTNAG 2 cut(s) 23, 212
BstDSI CCRYGG 2 cut(s) 95, 519
BstENI CCTNNNNNAGG 1 cut(s) 635
BstF5I GGATG 2 cut(s) 10, 488
BstFNI CGCG 1 cut(s) 463
BstHHI GCGC 2 cut(s) 234, 465
BstKTI GATC 5 cut(s) 13, 70, 82, 480, 811
BstMBI GATC 5 cut(s) 10, 67, 79, 477, 808
BstMWI GCNNNNNNNGC 5 cut(s) 91, 201, 204, 397, 901
BstNI CCWGG 1 cut(s) 434
BstSCI CCNGG 4 cut(s) 337, 432, 480, 841
BstSFI CTRYAG 1 cut(s) 205
BstSNI TACGTA 1 cut(s) 451
BstUI CGCG 1 cut(s) 463
BstV1I GCAGC 4 cut(s) 191, 412, 580, 834
BstV2I GAAGAC 2 cut(s) 117, 594
BstX2I RGATCY 1 cut(s) 477
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 1 cut(s) 477
BsuRI GGCC 5 cut(s) 94, 153, 170, 183, 485
BtgI CCRYGG 2 cut(s) 95, 519
BtrI CACGTC 1 cut(s) 248
BtsCI GGATG 2 cut(s) 10, 488
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 3 cut(s) 164, 537, 570
BveI ACCTGC 1 cut(s) 639
Cac8I GCNNGC 2 cut(s) 393, 425
CaiI CAGNNNCTG 1 cut(s) 277
CciI TCATGA 1 cut(s) 49
CfoI GCGC 2 cut(s) 234, 465
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 4 cut(s) 92, 151, 181, 483
CseI GACGC 2 cut(s) 446, 630
Csp6I GTAC 2 cut(s) 16, 705
CviAII CATG 4 cut(s) 50, 96, 124, 442
CviQI GTAC 2 cut(s) 16, 705
DdeI CTNAG 2 cut(s) 23, 212
DpnI GATC 5 cut(s) 12, 69, 81, 479, 810
DpnII GATC 5 cut(s) 10, 67, 79, 477, 808
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 870
Eco105I TACGTA 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 95
Eco88I CYCGRG 3 cut(s) 178, 635, 692
EcoNI CCTNNNNNAGG 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 4 cut(s) 53, 99, 127, 445
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 1 cut(s) 863
FatI CATG 4 cut(s) 49, 95, 123, 441
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 6 cut(s) 196, 205, 401, 591, 594, 823
FokI GGATG 2 cut(s) 17, 475
Fsp4HI GCNGC 6 cut(s) 196, 205, 401, 591, 594, 823
GlaI GCGC 2 cut(s) 233, 464
GluI GCNGC 6 cut(s) 196, 205, 401, 591, 594, 823
GsaI CCCAGC 2 cut(s) 304, 600
GsuI CTGGAG 1 cut(s) 391
HaeIII GGCC 5 cut(s) 94, 153, 170, 183, 485
HapII CCGG 6 cut(s) 154, 171, 338, 481, 657, 843
HgaI GACGC 2 cut(s) 446, 630
HhaI GCGC 2 cut(s) 234, 465
Hin1I GRCGYC 3 cut(s) 414, 438, 641
Hin1II CATG 4 cut(s) 53, 99, 127, 445
Hin6I GCGC 2 cut(s) 232, 463
HinP1I GCGC 2 cut(s) 232, 463
HincII GTYRAC 3 cut(s) 418, 515, 837
HindII GTYRAC 3 cut(s) 418, 515, 837
HinfI GANTC 5 cut(s) 113, 280, 381, 457, 494
HpaII CCGG 6 cut(s) 154, 171, 338, 481, 657, 843
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 4 cut(s) 418, 515, 719, 837
Hpy188I TCNGA 4 cut(s) 279, 493, 793, 808
Hpy188III TCNNGA 5 cut(s) 50, 71, 674, 692, 782
Hpy8I GTNNAC 4 cut(s) 418, 515, 719, 837
Hpy99I CGWCG 1 cut(s) 249
HpyCH4III ACNGT 4 cut(s) 103, 410, 502, 830
HpyCH4IV ACGT 3 cut(s) 247, 414, 450
HpyCH4V TGCA 4 cut(s) 207, 542, 647, 895
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 201, 204, 397, 901
HpyF3I CTNAG 2 cut(s) 23, 212
HpySE526I ACGT 3 cut(s) 247, 414, 450
Hsp92I GRCGYC 3 cut(s) 414, 438, 641
Hsp92II CATG 4 cut(s) 53, 99, 127, 445
HspAI GCGC 2 cut(s) 232, 463
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 5 cut(s) 10, 67, 79, 477, 808
Lsp1109I GCAGC 4 cut(s) 191, 412, 580, 834
MaeII ACGT 3 cut(s) 247, 414, 450
MaeIII GTNAC 4 cut(s) 43, 54, 410, 446
MalI GATC 5 cut(s) 12, 69, 81, 479, 810
MboI GATC 5 cut(s) 10, 67, 79, 477, 808
MboII GAAGA 8 cut(s) 86, 122, 275, 331, 354, 594, 747, 887
MflI RGATCY 1 cut(s) 477
MluCI AATT 5 cut(s) 160, 428, 710, 795, 862
MlyI GAGTC 2 cut(s) 107, 390
MnlI CCTC 8 cut(s) 20, 100, 142, 272, 496, 544, 578, 631
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 2 cut(s) 467, 906
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 6 cut(s) 154, 171, 338, 481, 657, 843
MspR9I CCNGG 4 cut(s) 339, 434, 482, 843
MvaI CCWGG 1 cut(s) 434
MvnI CGCG 1 cut(s) 463
MwoI GCNNNNNNNGC 5 cut(s) 91, 201, 204, 397, 901
NciI CCSGG 3 cut(s) 339, 482, 843
NcoI CCATGG 1 cut(s) 95
NdeII GATC 5 cut(s) 10, 67, 79, 477, 808
NlaIII CATG 4 cut(s) 53, 99, 127, 445
NlaIV GGNNCC 2 cut(s) 479, 805
NmuCI GTSAC 1 cut(s) 410
PagI TCATGA 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 3 cut(s) 280, 457, 494
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 6 cut(s) 197, 206, 402, 592, 595, 824
PleI GAGTC 2 cut(s) 107, 389
PpsI GAGTC 2 cut(s) 107, 389
Ppu21I YACGTR 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 432
PspFI CCCAGC 2 cut(s) 300, 596
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 2 cut(s) 479, 805
PspPI GGNCC 4 cut(s) 92, 151, 181, 483
PstI CTGCAG 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 477
RsaI GTAC 2 cut(s) 17, 706
RsaNI GTAC 2 cut(s) 16, 705
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 2 cut(s) 467, 906
SatI GCNGC 6 cut(s) 196, 205, 401, 591, 594, 823
Sau3AI GATC 5 cut(s) 10, 67, 79, 477, 808
Sau96I GGNCC 4 cut(s) 92, 151, 181, 483
ScaI AGTACT 2 cut(s) 17, 706
SchI GAGTC 2 cut(s) 107, 390
ScrFI CCNGG 4 cut(s) 339, 434, 482, 843
SfcI CTRYAG 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 122
SnaBI TACGTA 1 cut(s) 451
Sse9I AATT 5 cut(s) 160, 428, 710, 795, 862
SsiI CCGC 5 cut(s) 195, 326, 461, 528, 590
SspI AATATT 2 cut(s) 688, 749
StyD4I CCNGG 4 cut(s) 337, 432, 480, 841
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 4 cut(s) 103, 410, 502, 830
TaiI ACGT 3 cut(s) 250, 417, 453
TaqI TCGA 2 cut(s) 244, 317
TasI AATT 5 cut(s) 160, 428, 710, 795, 862
TatI WGTACW 2 cut(s) 15, 704
TauI GCSGC 2 cut(s) 198, 593
TfiI GAWTC 3 cut(s) 280, 457, 494
Tru1I TTAA 2 cut(s) 467, 906
Tru9I TTAA 2 cut(s) 467, 906
TscAI CASTG 3 cut(s) 171, 544, 577
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 4 cut(s) 204, 400, 593, 822
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 4 cut(s) 27, 281, 752, 888
TspGWI ACGGA 3 cut(s) 490, 536, 680
TspRI CASTG 3 cut(s) 171, 544, 577
XagI CCTNNNNNAGG 1 cut(s) 635
XapI RAATTY 3 cut(s) 160, 795, 862
XmnI GAANNNNTTC 1 cut(s) 273
ZraI GACGTC 1 cut(s) 415
ZrmI AGTACT 2 cut(s) 17, 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.