Rw3G024680
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013233
Physical Location & Seq
Forward (+)
31941219 .. 31942366
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024680.1

Sequence Viewer

Length: 879 bp
ATGGATGTTGATCAGTACTTACTGAGAGGTTATACTTCACCTGTAACTCTTGAGTTACCAAGCTGTGATCCAGAAGATGATCTGCGAAAAGGGCCATGGACAGTTGAGGAAGACTCCATTCTCATGGAGTATATCAACACTCACGGCGAGGGCCGTGGCAAAAGCTGCAGACTGAGATGGTTGAACTACTTGCGCCCAAATGTTCGACGTGGAAATATCACCCTCCAAGAACAGCTTCTGATTCTTCAACTTCATTCTCGCTGGGGCAACAGGTGGTCGAAGATAGCGGAATACTTGCCGGGAAGAACAGACAATGAGATAAAAAACTACTGGAGAACAAGAGTCCAAAAGCAAGCAAAGCAGCTCAACTGTGACGTCAACAGCAAGCAATTCCAGGACGCCATGCGTTACGTATGGATTCCGCGCTTAATGGAACGGATCAGGGCCTCATCCGATTCTACTGTGTTATCAGGTCAACCCACGGAAACCACCACTTCCACTGCATTTACACCACCAGATGACTACTGCCTCACTGACCATAGTAATACGGCGGCTGCTGGGTCTTCTCACTACTGGATTGACCCGAACTACCTGCCCGAGGCGTCTTCAACTTCGTCCGGCTCAACGGAACTTCAAGATTGTTTGAATATTCCCGAGCCTACCAGTACAGAATTCAGTGAACTCAACTGCTATCCAATGAACGGGCAATATTATTCTTCAACAAACTGGTCGGGTTGTTATCAAGATGGTTCAGATATTCAAGGTTCCGAACAAATAGAAAGCAGCAACAGTTGGTCAACTCCTGGTGGGGACTTGGTGGAGAATTTATGGAATGAAGAGAATATATGGTTCTTGCAACAACAGCTTAATATCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

292

Amino Acids

33.52

Weight (kDa)

4.66

Isoelectric Point (pI)

63.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 70 - 113 7.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 74 - 121 3.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47190
fragaria_vesca FvH4_1g26720
malus_domestica MD09G1286900.v1.1 MD17G1279200.v1.1
prunus_persica Prupe.3G006300_v2.0.a1
pyrus_communis pycom17g27710
rosa_chinensis RchiOBHm_Chr3g0486901
rosa_laevigata RLG00000023046
rosa_multiflora Rmu_sc0000501.1_g000017 Rmu_sc0003470.1_g000020
rosa_roxburghii Rroxscaffold_6G00395370
rosa_rugosa Rorug03G0228600 Rorug03G0228700
rosa_samantha Rh3AG278000 Rh3BG313800 Rh3CG312200 Rh3DG308500
rosa_wichuraiana Rw3G024680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 378
Acc36I ACCTGC 1 cut(s) 600
AccII CGCG 1 cut(s) 424
AciI CCGC 3 cut(s) 287, 422, 551
AclWI GGATC 2 cut(s) 62, 446
AcsI RAATTY 2 cut(s) 671, 823
AcyI GRCGYC 3 cut(s) 375, 399, 602
AfaI GTAC 2 cut(s) 17, 667
AfiI CCNNNNNNNGG 2 cut(s) 598, 701
AgsI TTSAA 7 cut(s) 184, 248, 609, 635, 646, 720, 761
AjiI CACGTC 1 cut(s) 209
AjnI CCWGG 2 cut(s) 393, 802
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AluBI AGCT 5 cut(s) 63, 165, 235, 364, 865
AluI AGCT 5 cut(s) 63, 165, 235, 364, 865
AlwI GGATC 2 cut(s) 62, 446
AlwNI CAGNNNCTG 1 cut(s) 238
Ama87I CYCGRG 2 cut(s) 596, 653
AoxI GGCC 3 cut(s) 92, 151, 444
ApeKI GCWGC 4 cut(s) 165, 361, 554, 783
ApoI RAATTY 2 cut(s) 671, 823
Asp700I GAANNNNTTC 1 cut(s) 234
AspLEI GCGC 2 cut(s) 195, 426
AspS9I GGNCC 3 cut(s) 92, 151, 444
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 2 cut(s) 30, 211
AvaI CYCGRG 2 cut(s) 596, 653
BbsI GAAGAC 3 cut(s) 117, 555, 597
BbvI GCAGC 4 cut(s) 152, 373, 541, 795
BccI CCATC 2 cut(s) 171, 740
BceAI ACGGC 3 cut(s) 138, 160, 564
BcgI CGANNNNNNTGC 2 cut(s) 574, 608
BciT130I CCWGG 2 cut(s) 395, 804
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 600
BisI GCNGC 5 cut(s) 166, 362, 552, 555, 784
BlsI GCNGC 5 cut(s) 167, 363, 553, 556, 785
BmcAI AGTACT 1 cut(s) 17
Bme1390I CCNGG 3 cut(s) 300, 395, 804
BmeT110I CYCGRG 2 cut(s) 596, 653
BmgBI CACGTC 1 cut(s) 209
BmgT120I GGNCC 3 cut(s) 92, 151, 444
BmiI GGNNCC 1 cut(s) 766
BmrFI CCNGG 3 cut(s) 300, 395, 804
BpiI GAAGAC 3 cut(s) 117, 555, 597
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 300
BsaAI YACGTR 1 cut(s) 412
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 3 cut(s) 375, 399, 602
BsaJI CCNNGG 4 cut(s) 95, 154, 480, 597
Bsc4I CCNNNNNNNGG 2 cut(s) 598, 701
Bse1I ACTGG 4 cut(s) 335, 578, 663, 731
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 2 cut(s) 395, 804
BseDI CCNNGG 4 cut(s) 95, 154, 480, 597
BseGI GGATG 2 cut(s) 10, 449
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 598, 701
BseMII CTCAG 2 cut(s) 14, 164
BseNI ACTGG 4 cut(s) 335, 578, 663, 731
BseXI GCAGC 4 cut(s) 152, 373, 541, 795
BseYI CCCAGC 2 cut(s) 261, 557
Bsh1236I CGCG 1 cut(s) 424
BshFI GGCC 3 cut(s) 94, 153, 446
BsiHKCI CYCGRG 2 cut(s) 596, 653
BsiSI CCGG 2 cut(s) 299, 618
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 2 cut(s) 598, 701
BsmFI GGGAC 1 cut(s) 824
BsnI GGCC 3 cut(s) 94, 153, 446
BsoBI CYCGRG 2 cut(s) 596, 653
Bsp143I GATC 4 cut(s) 10, 67, 79, 438
Bsp19I CCATGG 1 cut(s) 95
BspACI CCGC 3 cut(s) 287, 422, 551
BspANI GGCC 3 cut(s) 94, 153, 446
BspCNI CTCAG 2 cut(s) 15, 165
BspFNI CGCG 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 766
BspMAI CTGCAG 1 cut(s) 170
BspMI ACCTGC 1 cut(s) 600
BspPI GGATC 2 cut(s) 62, 446
BsrI ACTGG 4 cut(s) 335, 578, 663, 731
BssECI CCNNGG 4 cut(s) 95, 154, 480, 597
BssMI GATC 4 cut(s) 10, 67, 79, 438
BssNI GRCGYC 3 cut(s) 375, 399, 602
BssT1I CCWWGG 1 cut(s) 95
Bst2UI CCWGG 2 cut(s) 395, 804
Bst4CI ACNGT 4 cut(s) 103, 371, 463, 791
Bst6I CTCTTC 1 cut(s) 831
BstACI GRCGYC 3 cut(s) 375, 399, 602
BstAPI GCANNNNNTGC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 412
BstC8I GCNNGC 2 cut(s) 354, 386
BstDEI CTNAG 2 cut(s) 23, 173
BstDSI CCRYGG 3 cut(s) 95, 154, 480
BstENI CCTNNNNNAGG 1 cut(s) 596
BstF5I GGATG 2 cut(s) 10, 449
BstFNI CGCG 1 cut(s) 424
BstHHI GCGC 2 cut(s) 195, 426
BstKTI GATC 4 cut(s) 13, 70, 82, 441
BstMBI GATC 4 cut(s) 10, 67, 79, 438
BstMWI GCNNNNNNNGC 4 cut(s) 91, 165, 358, 862
BstNI CCWGG 2 cut(s) 395, 804
BstSCI CCNGG 3 cut(s) 298, 393, 802
BstSFI CTRYAG 1 cut(s) 166
BstSNI TACGTA 1 cut(s) 412
BstUI CGCG 1 cut(s) 424
BstV1I GCAGC 4 cut(s) 152, 373, 541, 795
BstV2I GAAGAC 3 cut(s) 117, 555, 597
BstXI CCANNNNNNTGG 1 cut(s) 124
BsuRI GGCC 3 cut(s) 94, 153, 446
BtgI CCRYGG 3 cut(s) 95, 154, 480
BtrI CACGTC 1 cut(s) 209
BtsCI GGATG 2 cut(s) 10, 449
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 3 cut(s) 498, 531, 682
BveI ACCTGC 1 cut(s) 600
Cac8I GCNNGC 2 cut(s) 354, 386
CaiI CAGNNNCTG 1 cut(s) 238
CfoI GCGC 2 cut(s) 195, 426
Cfr13I GGNCC 3 cut(s) 92, 151, 444
CseI GACGC 2 cut(s) 407, 591
Csp6I GTAC 2 cut(s) 16, 666
CviAII CATG 3 cut(s) 96, 124, 403
CviQI GTAC 2 cut(s) 16, 666
DdeI CTNAG 2 cut(s) 23, 173
DpnI GATC 4 cut(s) 12, 69, 81, 440
DpnII GATC 4 cut(s) 10, 67, 79, 438
Eam1104I CTCTTC 1 cut(s) 831
EarI CTCTTC 1 cut(s) 831
Eco105I TACGTA 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 95
Eco88I CYCGRG 2 cut(s) 596, 653
EcoNI CCTNNNNNAGG 1 cut(s) 596
EcoO109I RGGNCCY 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 671
EcoRII CCWGG 2 cut(s) 393, 802
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 3 cut(s) 99, 127, 406
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FaqI GGGAC 1 cut(s) 824
FatI CATG 3 cut(s) 95, 123, 402
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 5 cut(s) 166, 362, 552, 555, 784
FokI GGATG 2 cut(s) 17, 436
Fsp4HI GCNGC 5 cut(s) 166, 362, 552, 555, 784
GlaI GCGC 2 cut(s) 194, 425
GluI GCNGC 5 cut(s) 166, 362, 552, 555, 784
GsaI CCCAGC 2 cut(s) 265, 561
GsuI CTGGAG 1 cut(s) 352
HaeIII GGCC 3 cut(s) 94, 153, 446
HapII CCGG 2 cut(s) 299, 618
HgaI GACGC 2 cut(s) 407, 591
HhaI GCGC 2 cut(s) 195, 426
Hin1I GRCGYC 3 cut(s) 375, 399, 602
Hin1II CATG 3 cut(s) 99, 127, 406
Hin6I GCGC 2 cut(s) 193, 424
HinP1I GCGC 2 cut(s) 193, 424
HincII GTYRAC 3 cut(s) 379, 476, 798
HindII GTYRAC 3 cut(s) 379, 476, 798
HinfI GANTC 5 cut(s) 113, 241, 342, 418, 455
HpaII CCGG 2 cut(s) 299, 618
HphI GGTGA 2 cut(s) 30, 211
Hpy166II GTNNAC 4 cut(s) 379, 476, 680, 798
Hpy188I TCNGA 4 cut(s) 240, 454, 754, 769
Hpy188III TCNNGA 5 cut(s) 50, 71, 635, 653, 743
Hpy8I GTNNAC 4 cut(s) 379, 476, 680, 798
Hpy99I CGWCG 1 cut(s) 210
HpyCH4III ACNGT 4 cut(s) 103, 371, 463, 791
HpyCH4IV ACGT 3 cut(s) 208, 375, 411
HpyCH4V TGCA 3 cut(s) 168, 503, 856
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 165, 358, 862
HpyF3I CTNAG 2 cut(s) 23, 173
HpySE526I ACGT 3 cut(s) 208, 375, 411
Hsp92I GRCGYC 3 cut(s) 375, 399, 602
Hsp92II CATG 3 cut(s) 99, 127, 406
HspAI GCGC 2 cut(s) 193, 424
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 4 cut(s) 10, 67, 79, 438
Lsp1109I GCAGC 4 cut(s) 152, 373, 541, 795
MaeII ACGT 3 cut(s) 208, 375, 411
MaeIII GTNAC 4 cut(s) 43, 54, 371, 407
MalI GATC 4 cut(s) 12, 69, 81, 440
MboI GATC 4 cut(s) 10, 67, 79, 438
MboII GAAGA 9 cut(s) 86, 122, 236, 292, 315, 555, 597, 708, 848
MluCI AATT 3 cut(s) 389, 671, 823
MlyI GAGTC 2 cut(s) 107, 351
MnlI CCTC 7 cut(s) 20, 100, 142, 233, 457, 539, 592
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 2 cut(s) 428, 867
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 2 cut(s) 299, 618
MspR9I CCNGG 3 cut(s) 300, 395, 804
MvaI CCWGG 2 cut(s) 395, 804
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 4 cut(s) 91, 165, 358, 862
NciI CCSGG 1 cut(s) 300
NcoI CCATGG 1 cut(s) 95
NdeII GATC 4 cut(s) 10, 67, 79, 438
NlaIII CATG 3 cut(s) 99, 127, 406
NlaIV GGNNCC 1 cut(s) 766
NmuCI GTSAC 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 3 cut(s) 241, 418, 455
PfoI TCCNGGA 1 cut(s) 393
PkrI GCNGC 5 cut(s) 167, 363, 553, 556, 785
PleI GAGTC 2 cut(s) 107, 350
PpsI GAGTC 2 cut(s) 107, 350
Ppu21I YACGTR 1 cut(s) 412
Psp6I CCWGG 2 cut(s) 393, 802
PspFI CCCAGC 2 cut(s) 261, 557
PspGI CCWGG 2 cut(s) 393, 802
PspN4I GGNNCC 1 cut(s) 766
PspPI GGNCC 3 cut(s) 92, 151, 444
PstI CTGCAG 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 238
RsaI GTAC 2 cut(s) 17, 667
RsaNI GTAC 2 cut(s) 16, 666
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 2 cut(s) 428, 867
SatI GCNGC 5 cut(s) 166, 362, 552, 555, 784
Sau3AI GATC 4 cut(s) 10, 67, 79, 438
Sau96I GGNCC 3 cut(s) 92, 151, 444
ScaI AGTACT 1 cut(s) 17
SchI GAGTC 2 cut(s) 107, 351
ScrFI CCNGG 3 cut(s) 300, 395, 804
SfcI CTRYAG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SnaBI TACGTA 1 cut(s) 412
Sse9I AATT 3 cut(s) 389, 671, 823
SsiI CCGC 3 cut(s) 287, 422, 551
SspI AATATT 2 cut(s) 649, 710
StyD4I CCNGG 3 cut(s) 298, 393, 802
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 4 cut(s) 103, 371, 463, 791
TaiI ACGT 3 cut(s) 211, 378, 414
TaqI TCGA 3 cut(s) 205, 278, 873
TasI AATT 3 cut(s) 389, 671, 823
TatI WGTACW 2 cut(s) 15, 665
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 3 cut(s) 241, 418, 455
Tru1I TTAA 2 cut(s) 428, 867
Tru9I TTAA 2 cut(s) 428, 867
TscAI CASTG 3 cut(s) 505, 538, 682
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 4 cut(s) 165, 361, 554, 783
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 3 cut(s) 242, 713, 849
TspGWI ACGGA 3 cut(s) 451, 497, 641
TspRI CASTG 3 cut(s) 505, 538, 682
XagI CCTNNNNNAGG 1 cut(s) 596
XapI RAATTY 2 cut(s) 671, 823
XmnI GAANNNNTTC 1 cut(s) 234
ZraI GACGTC 1 cut(s) 376
ZrmI AGTACT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.