MD09G1286900.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0013233
Physical Location & Seq
Reverse (-)
36579428 .. 36580730
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1286900.v1.1.491

Sequence Viewer

Length: 909 bp
ATGGATACTAGTAACGTACATGATCAGATGAAATCAGCAGGTTATGGCTCATTAGCAGCAGCAGCAGCTCCTGATCAACCAATTGAAGAAGGACTGGGCTTAAGAACAGGTCCATGGACAGCCGAGGAGGACTCCATTCTCATCGATTACGTCAACCTTCACGGTGAAGGCCGCTGGAATTCCTTGGCTCGTCATGCAGGTCTGAAACGAACTGGAAAAAGCTGCAGATTAAGGTGGTTAAACTACTTGCGACCAAGCGTTCGACGTGGAAACATAACTCTCCAAGAACAGCTTATAATTCTTCAACTTCATTCACGCTGGGGTAACAGGTGGTCCAAGATAGCCGAACACTTGCCCGGTAGAACAGACAATGAGATAAAGAACTATTGGAGAACAAGAGTGCAAAAGCAAGCAAAACAGCTCAAGTGTGATGTTAACAGCAAACAATTTCAAGATGCCATGCGTTACGTATGGATTCCCCGTCTAATTGAACGGATCGGGGGCTTGCCTGAATCTCTACCAGATCAACCCAGGACTTGTACCACTACGAGATCCGAGTTTGAGTACTGGGTTGACACTAATTTCGTGCCCAAAACCTCTGGCAGTACTTCATCAGACTCATATGATCAGGTTCAAGCTTGTTCAATTCCCACCGACCGTACTAGCAGTGGTGATGAATTCATGACTTATCCATGCAGCGGTCAATATGGTTCAGAAAACGGGTCGGGTTATAGTCAAAATGGTATAAATTCAGATATTCATGACTTTGAGCAAATCGATTATTGTTCAACCGGTGGGGACACATCAGTGGAGAATTTGTGGAATGAAGAGAATATATGGTTCTTGCAACAGCAGCTTAGTGATGGTAATATTGAATTGATGGAAGGATCGAGCAGCCACGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

303

Amino Acids

34.23

Weight (kDa)

5.16

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 37 - 83 5.6e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 39 - 96 1.5e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 89 - 132 3.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 93 - 140 1.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47190
fragaria_vesca FvH4_1g26720
malus_domestica MD09G1286900.v1.1 MD17G1279200.v1.1
prunus_persica Prupe.3G006300_v2.0.a1
pyrus_communis pycom17g27710
rosa_chinensis RchiOBHm_Chr3g0486901
rosa_laevigata RLG00000023046
rosa_multiflora Rmu_sc0000501.1_g000017 Rmu_sc0003470.1_g000020
rosa_roxburghii Rroxscaffold_6G00395370
rosa_rugosa Rorug03G0228600 Rorug03G0228700
rosa_samantha Rh3AG278000 Rh3BG313800 Rh3CG312200 Rh3DG308500
rosa_wichuraiana Rw3G024680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
Acc36I ACCTGC 2 cut(s) 29, 188
AciI CCGC 2 cut(s) 172, 699
AclWI GGATC 3 cut(s) 503, 546, 895
AcsI RAATTY 4 cut(s) 178, 677, 748, 814
AfaI GTAC 5 cut(s) 18, 541, 566, 607, 661
AfiI CCNNNNNNNGG 1 cut(s) 698
AflII CTTAAG 1 cut(s) 100
AgeI ACCGGT 1 cut(s) 791
AgsI TTSAA 8 cut(s) 86, 305, 452, 491, 635, 645, 789, 875
AhlI ACTAGT 1 cut(s) 8
AjiI CACGTC 1 cut(s) 266
AjnI CCWGG 1 cut(s) 530
AleI CACNNNNGTG 1 cut(s) 806
AluBI AGCT 6 cut(s) 68, 222, 292, 421, 638, 856
AluI AGCT 6 cut(s) 68, 222, 292, 421, 638, 856
AlwI GGATC 3 cut(s) 503, 546, 895
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 8 cut(s) 56, 59, 62, 65, 222, 696, 853, 894
ApoI RAATTY 4 cut(s) 178, 677, 748, 814
ArsI GACNNNNNNTTYG 4 cut(s) 243, 275, 566, 598
AsiGI ACCGGT 1 cut(s) 791
AspS9I GGNCC 2 cut(s) 110, 333
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 176, 683
AvaII GGWCC 2 cut(s) 110, 333
BaeGI GKGCMC 1 cut(s) 591
BbvI GCAGC 7 cut(s) 68, 71, 74, 77, 209, 708, 865
BccI CCATC 2 cut(s) 857, 874
BciT130I CCWGG 1 cut(s) 532
BclI TGATCA 3 cut(s) 22, 73, 625
BcnI CCSGG 1 cut(s) 357
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 3 cut(s) 9, 663, 907
BfmI CTRYAG 1 cut(s) 223
BfrI CTTAAG 1 cut(s) 100
BfuAI ACCTGC 2 cut(s) 29, 188
BisI GCNGC 9 cut(s) 57, 60, 63, 66, 172, 223, 697, 854, 895
BlsI GCNGC 9 cut(s) 58, 61, 64, 67, 173, 224, 698, 855, 896
BmcAI AGTACT 2 cut(s) 566, 607
Bme1390I CCNGG 2 cut(s) 357, 532
Bme18I GGWCC 2 cut(s) 110, 333
BmgBI CACGTC 1 cut(s) 266
BmgT120I GGNCC 2 cut(s) 110, 333
BmrFI CCNGG 2 cut(s) 357, 532
BmrI ACTGGG 2 cut(s) 104, 577
BmsI GCATC 1 cut(s) 445
BmuI ACTGGG 2 cut(s) 104, 577
BplI GAGNNNNNCTC 2 cut(s) 116, 148
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 357
Bsa29I ATCGAT 2 cut(s) 144, 777
BsaAI YACGTR 1 cut(s) 469
BsaJI CCNNGG 4 cut(s) 113, 123, 183, 530
BsaWI WCCGGW 1 cut(s) 791
BsaXI ACNNNNNCTCC 2 cut(s) 803, 833
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse118I RCCGGY 1 cut(s) 791
Bse1I ACTGG 3 cut(s) 99, 217, 572
BseBI CCWGG 1 cut(s) 532
BseCI ATCGAT 2 cut(s) 144, 777
BseDI CCNNGG 4 cut(s) 113, 123, 183, 530
BseLI CCNNNNNNNGG 1 cut(s) 698
BseNI ACTGG 3 cut(s) 99, 217, 572
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 591
BseXI GCAGC 7 cut(s) 68, 71, 74, 77, 209, 708, 865
BseYI CCCAGC 1 cut(s) 318
Bsh1285I CGRYCG 1 cut(s) 658
BshFI GGCC 1 cut(s) 171
BshTI ACCGGT 1 cut(s) 791
BshVI ATCGAT 2 cut(s) 144, 777
BsiEI CGRYCG 1 cut(s) 658
BsiSI CCGG 2 cut(s) 357, 792
BslFI GGGAC 1 cut(s) 812
BslI CCNNNNNNNGG 1 cut(s) 698
BsmFI GGGAC 1 cut(s) 812
BsnI GGCC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 7 cut(s) 22, 73, 495, 523, 551, 625, 887
Bsp19I CCATGG 1 cut(s) 113
BspACI CCGC 2 cut(s) 172, 699
BspANI GGCC 1 cut(s) 171
BspDI ATCGAT 2 cut(s) 144, 777
BspHI TCATGA 2 cut(s) 681, 760
BspMAI CTGCAG 1 cut(s) 227
BspMI ACCTGC 2 cut(s) 29, 188
BspPI GGATC 3 cut(s) 503, 546, 895
BspTI CTTAAG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 791
BsrI ACTGG 3 cut(s) 99, 217, 572
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 4 cut(s) 113, 123, 183, 530
BssMI GATC 7 cut(s) 22, 73, 495, 523, 551, 625, 887
BssT1I CCWWGG 2 cut(s) 113, 183
Bst2UI CCWGG 1 cut(s) 532
Bst4CI ACNGT 2 cut(s) 164, 659
Bst6I CTCTTC 1 cut(s) 822
BstAFI CTTAAG 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 469
BstC8I GCNNGC 2 cut(s) 411, 506
BstDEI CTNAG 1 cut(s) 857
BstDSI CCRYGG 1 cut(s) 113
BstKTI GATC 7 cut(s) 25, 76, 498, 526, 554, 628, 890
BstMBI GATC 7 cut(s) 22, 73, 495, 523, 551, 625, 887
BstMCI CGRYCG 1 cut(s) 658
BstMWI GCNNNNNNNGC 4 cut(s) 62, 65, 194, 853
BstNI CCWGG 1 cut(s) 532
BstSCI CCNGG 2 cut(s) 355, 530
BstSFI CTRYAG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 591
BstSNI TACGTA 1 cut(s) 469
BstV1I GCAGC 7 cut(s) 68, 71, 74, 77, 209, 708, 865
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
Bsu15I ATCGAT 2 cut(s) 144, 777
BsuRI GGCC 1 cut(s) 171
BsuTUI ATCGAT 2 cut(s) 144, 777
BtgI CCRYGG 1 cut(s) 113
BtrI CACGTC 1 cut(s) 266
BtsI GCAGTG 1 cut(s) 673
BtsIMutI CAGTG 2 cut(s) 673, 813
BveI ACCTGC 2 cut(s) 29, 188
Cac8I GCNNGC 2 cut(s) 411, 506
CaiI CAGNNNCTG 1 cut(s) 71
CciI TCATGA 2 cut(s) 681, 760
Cfr10I RCCGGY 1 cut(s) 791
Cfr13I GGNCC 2 cut(s) 110, 333
ClaI ATCGAT 2 cut(s) 144, 777
Csp6I GTAC 5 cut(s) 17, 540, 565, 606, 660
CspAI ACCGGT 1 cut(s) 791
CviAII CATG 7 cut(s) 20, 114, 194, 460, 682, 693, 761
CviQI GTAC 5 cut(s) 17, 540, 565, 606, 660
DdeI CTNAG 1 cut(s) 857
DpnI GATC 7 cut(s) 24, 75, 497, 525, 553, 627, 889
DpnII GATC 7 cut(s) 22, 73, 495, 523, 551, 625, 887
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
Eco105I TACGTA 1 cut(s) 469
Eco130I CCWWGG 2 cut(s) 113, 183
Eco47I GGWCC 2 cut(s) 110, 333
EcoRI GAATTC 2 cut(s) 178, 677
EcoRII CCWGG 1 cut(s) 530
EcoT14I CCWWGG 2 cut(s) 113, 183
ErhI CCWWGG 2 cut(s) 113, 183
FaeI CATG 7 cut(s) 23, 117, 197, 463, 685, 696, 764
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 1 cut(s) 812
FatI CATG 7 cut(s) 19, 113, 193, 459, 681, 692, 760
FauNDI CATATG 1 cut(s) 622
FbaI TGATCA 3 cut(s) 22, 73, 625
Fnu4HI GCNGC 9 cut(s) 57, 60, 63, 66, 172, 223, 697, 854, 895
Fsp4HI GCNGC 9 cut(s) 57, 60, 63, 66, 172, 223, 697, 854, 895
FspBI CTAG 3 cut(s) 9, 663, 907
GluI GCNGC 9 cut(s) 57, 60, 63, 66, 172, 223, 697, 854, 895
GsaI CCCAGC 1 cut(s) 322
HaeIII GGCC 1 cut(s) 171
HapII CCGG 2 cut(s) 357, 792
Hin1II CATG 7 cut(s) 23, 117, 197, 463, 685, 696, 764
HincII GTYRAC 3 cut(s) 154, 436, 574
HindII GTYRAC 3 cut(s) 154, 436, 574
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 4 cut(s) 131, 475, 512, 617
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 2 cut(s) 357, 792
HphI GGTGA 2 cut(s) 176, 683
Hpy166II GTNNAC 3 cut(s) 154, 436, 574
Hpy188I TCNGA 6 cut(s) 27, 204, 556, 616, 715, 754
Hpy188III TCNNGA 4 cut(s) 71, 452, 682, 761
Hpy8I GTNNAC 3 cut(s) 154, 436, 574
Hpy99I CGWCG 2 cut(s) 267, 905
HpyAV CCTTC 4 cut(s) 83, 161, 167, 878
HpyCH4III ACNGT 2 cut(s) 164, 659
HpyCH4IV ACGT 4 cut(s) 15, 150, 265, 468
HpyCH4V TGCA 5 cut(s) 197, 225, 403, 696, 847
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 65, 194, 853
HpyF3I CTNAG 1 cut(s) 857
HpySE526I ACGT 4 cut(s) 15, 150, 265, 468
Hsp92II CATG 7 cut(s) 23, 117, 197, 463, 685, 696, 764
Ksp22I TGATCA 3 cut(s) 22, 73, 625
KspAI GTTAAC 1 cut(s) 436
Kzo9I GATC 7 cut(s) 22, 73, 495, 523, 551, 625, 887
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 7 cut(s) 68, 71, 74, 77, 209, 708, 865
LweI GCATC 1 cut(s) 445
MaeI CTAG 3 cut(s) 9, 663, 907
MaeII ACGT 4 cut(s) 15, 150, 265, 468
MaeIII GTNAC 3 cut(s) 11, 323, 464
MalI GATC 7 cut(s) 24, 75, 497, 525, 553, 627, 889
MboI GATC 7 cut(s) 22, 73, 495, 523, 551, 625, 887
MboII GAAGA 3 cut(s) 98, 293, 839
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 1 cut(s) 591
MlyI GAGTC 2 cut(s) 125, 611
MnlI CCTC 3 cut(s) 118, 121, 607
MseI TTAA 4 cut(s) 101, 230, 239, 435
MslI CAYNNNNRTG 1 cut(s) 806
MspA1I CMGCKG 2 cut(s) 174, 699
MspCI CTTAAG 1 cut(s) 100
MspI CCGG 2 cut(s) 357, 792
MspR9I CCNGG 2 cut(s) 357, 532
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 532
MwoI GCNNNNNNNGC 4 cut(s) 62, 65, 194, 853
NciI CCSGG 1 cut(s) 357
NcoI CCATGG 1 cut(s) 113
NdeI CATATG 1 cut(s) 622
NdeII GATC 7 cut(s) 22, 73, 495, 523, 551, 625, 887
NlaIII CATG 7 cut(s) 23, 117, 197, 463, 685, 696, 764
NmeAIII GCCGAG 1 cut(s) 148
OliI CACNNNNGTG 1 cut(s) 806
PagI TCATGA 2 cut(s) 681, 760
PfeI GAWTC 2 cut(s) 475, 512
PinAI ACCGGT 1 cut(s) 791
PkrI GCNGC 9 cut(s) 58, 61, 64, 67, 173, 224, 698, 855, 896
PleI GAGTC 2 cut(s) 125, 611
PpsI GAGTC 2 cut(s) 125, 611
Ppu21I YACGTR 1 cut(s) 469
PsiI TTATAA 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 530
PspFI CCCAGC 1 cut(s) 318
PspGI CCWGG 1 cut(s) 530
PspPI GGNCC 2 cut(s) 110, 333
PstI CTGCAG 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 1 cut(s) 551
RsaI GTAC 5 cut(s) 18, 541, 566, 607, 661
RsaNI GTAC 5 cut(s) 17, 540, 565, 606, 660
RseI CAYNNNNRTG 1 cut(s) 806
SaqAI TTAA 4 cut(s) 101, 230, 239, 435
SatI GCNGC 9 cut(s) 57, 60, 63, 66, 172, 223, 697, 854, 895
Sau3AI GATC 7 cut(s) 22, 73, 495, 523, 551, 625, 887
Sau96I GGNCC 2 cut(s) 110, 333
ScaI AGTACT 2 cut(s) 566, 607
SchI GAGTC 2 cut(s) 125, 611
ScrFI CCNGG 2 cut(s) 357, 532
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 1 cut(s) 223
SinI GGWCC 2 cut(s) 110, 333
SmiMI CAYNNNNRTG 1 cut(s) 806
SmlI CTYRAG 2 cut(s) 100, 422
SmoI CTYRAG 2 cut(s) 100, 422
SnaBI TACGTA 1 cut(s) 469
SpeI ACTAGT 1 cut(s) 8
SsiI CCGC 2 cut(s) 172, 699
SspI AATATT 1 cut(s) 871
SspMI CTAG 3 cut(s) 9, 663, 907
StyD4I CCNGG 2 cut(s) 355, 530
StyI CCWWGG 2 cut(s) 113, 183
TaaI ACNGT 2 cut(s) 164, 659
TaiI ACGT 4 cut(s) 18, 153, 268, 471
TaqI TCGA 4 cut(s) 144, 262, 777, 890
TatI WGTACW 2 cut(s) 564, 605
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 475, 512
Tru1I TTAA 4 cut(s) 101, 230, 239, 435
Tru9I TTAA 4 cut(s) 101, 230, 239, 435
TscAI CASTG 2 cut(s) 673, 813
TseI GCWGC 8 cut(s) 56, 59, 62, 65, 222, 696, 853, 894
TspDTI ATGAA 7 cut(s) 44, 299, 600, 670, 690, 749, 840
TspGWI ACGGA 1 cut(s) 508
TspRI CASTG 2 cut(s) 673, 813
Vha464I CTTAAG 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 110, 333
XapI RAATTY 4 cut(s) 178, 677, 748, 814
XspI CTAG 3 cut(s) 9, 663, 907
ZrmI AGTACT 2 cut(s) 566, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.