Rh3BG313800
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0013233
Physical Location & Seq
Forward (+)
31924814 .. 31926347
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG313800.1

Sequence Viewer

Length: 477 bp
ATGCGTTACGTATGGATTCCGCGCTTAATGGAACGGATCCGGGCCTCATCCGATTCTACTGTGTTATCGGGTCAACCCACGGAAACCGCCACCTCCACTGCATTTACACCACCAGATGACTACTGCCTCACTGACCATAGTAATACGGCGGCTGCTGGGTCTTCTCACTACTGGGTTGACCCGAACTACCTGCTTGAGGCGTCTGCAACTTCGTCCGGCTCAACGGAACTTCAAGATTGTTTGAATATTCCCGAGCCTACCAGTACTGAGTTCAGCGAACTCAACTGCTATCCAATGAACGGGCAATATTATTCTTCAACAAACGGGTCGGGTTGTTATCAAGATGGTTCAGAAATTCAAGGTTCCGAGCAAATAGACAGCAGCAACAGTTGGTCAACTCCTGGTGGGGACTTGGTGGAGAATTTATGGAATGAAGAGAATATATGGTTCTTGCAACAACAGCTTAATAGCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

158

Amino Acids

17.48

Weight (kDa)

4.05

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47190
fragaria_vesca FvH4_1g26720
malus_domestica MD09G1286900.v1.1 MD17G1279200.v1.1
prunus_persica Prupe.3G006300_v2.0.a1
pyrus_communis pycom17g27710
rosa_chinensis RchiOBHm_Chr3g0486901
rosa_laevigata RLG00000023046
rosa_multiflora Rmu_sc0000501.1_g000017 Rmu_sc0003470.1_g000020
rosa_roxburghii Rroxscaffold_6G00395370
rosa_rugosa Rorug03G0228600 Rorug03G0228700
rosa_samantha Rh3AG278000 Rh3BG313800 Rh3CG312200 Rh3DG308500
rosa_wichuraiana Rw3G024680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 198
AccII CGCG 1 cut(s) 22
AciI CCGC 3 cut(s) 20, 87, 149
AclWI GGATC 2 cut(s) 31, 44
AcsI RAATTY 2 cut(s) 354, 421
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 2 cut(s) 196, 299
AgsI TTSAA 4 cut(s) 233, 244, 318, 359
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 1 cut(s) 463
AluI AGCT 1 cut(s) 463
AlwI GGATC 2 cut(s) 31, 44
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 152, 381
ApoI RAATTY 2 cut(s) 354, 421
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 42
AsuC2I CCSGG 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 251
BamHI GGATCC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 139, 393
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 162
BcgI CGANNNNNNTGC 2 cut(s) 172, 206
BciT130I CCWGG 1 cut(s) 402
BcnI CCSGG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 198
BisI GCNGC 3 cut(s) 150, 153, 382
BlsI GCNGC 3 cut(s) 151, 154, 383
BmcAI AGTACT 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 41, 402
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 2 cut(s) 38, 364
BmrFI CCNGG 2 cut(s) 41, 402
BmrI ACTGGG 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 299
Bse1I ACTGG 2 cut(s) 176, 261
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 196, 299
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 176, 261
BseXI GCAGC 2 cut(s) 139, 393
BseYI CCCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 2 cut(s) 40, 216
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 196, 299
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 251
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 3 cut(s) 20, 87, 149
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 2 cut(s) 38, 364
BspMI ACCTGC 1 cut(s) 198
BspPI GGATC 2 cut(s) 31, 44
BsrI ACTGG 2 cut(s) 176, 261
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 61, 389
Bst6I CTCTTC 1 cut(s) 429
BstACI GRCGYC 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 267
BstDSI CCRYGG 1 cut(s) 78
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 47
BstFNI CGCG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 460
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 2 cut(s) 39, 400
BstSNI TACGTA 1 cut(s) 10
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 139, 393
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 44
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 129
BveI ACCTGC 1 cut(s) 198
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 42
CseI GACGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 264
CviJI RGCY 5 cut(s) 44, 152, 219, 256, 463
CviKI_1 RGCY 5 cut(s) 44, 152, 219, 256, 463
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco105I TACGTA 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 400
FaiI YATR 5 cut(s) 13, 138, 427, 443, 445
FaqI GGGAC 1 cut(s) 422
Fnu4HI GCNGC 3 cut(s) 150, 153, 382
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 3 cut(s) 150, 153, 382
GlaI GCGC 1 cut(s) 23
GluI GCNGC 3 cut(s) 150, 153, 382
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 44
HapII CCGG 2 cut(s) 40, 216
HgaI GACGC 1 cut(s) 189
HhaI GCGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 200
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 3 cut(s) 74, 178, 396
HindII GTYRAC 3 cut(s) 74, 178, 396
HinfI GANTC 2 cut(s) 16, 53
HpaII CCGG 2 cut(s) 40, 216
Hpy166II GTNNAC 3 cut(s) 74, 178, 396
Hpy188I TCNGA 3 cut(s) 52, 352, 367
Hpy188III TCNNGA 3 cut(s) 233, 251, 341
Hpy8I GTNNAC 3 cut(s) 74, 178, 396
HpyCH4III ACNGT 2 cut(s) 61, 389
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 101, 206, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 460
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 200
HspAI GCGC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 9 cut(s) 53, 126, 141, 157, 203, 229, 274, 387, 414
Lsp1109I GCAGC 2 cut(s) 139, 393
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 5
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 3 cut(s) 153, 306, 446
MflI RGATCY 1 cut(s) 36
MluCI AATT 2 cut(s) 354, 421
MnlI CCTC 4 cut(s) 55, 103, 137, 190
MseI TTAA 2 cut(s) 26, 465
MspI CCGG 2 cut(s) 40, 216
MspR9I CCNGG 2 cut(s) 41, 402
MvaI CCWGG 1 cut(s) 402
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 460
NciI CCSGG 1 cut(s) 41
NdeII GATC 1 cut(s) 36
NlaIV GGNNCC 2 cut(s) 38, 364
PfeI GAWTC 2 cut(s) 16, 53
PkrI GCNGC 3 cut(s) 151, 154, 383
Ppu21I YACGTR 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 2 cut(s) 38, 364
PspPI GGNCC 1 cut(s) 42
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SaqAI TTAA 2 cut(s) 26, 465
SatI GCNGC 3 cut(s) 150, 153, 382
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 42
ScaI AGTACT 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 41, 402
SetI ASST 5 cut(s) 12, 95, 192, 364, 465
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SnaBI TACGTA 1 cut(s) 10
Sse9I AATT 2 cut(s) 354, 421
SsiI CCGC 3 cut(s) 20, 87, 149
SspI AATATT 2 cut(s) 247, 308
StyD4I CCNGG 2 cut(s) 39, 400
TaaI ACNGT 2 cut(s) 61, 389
TaiI ACGT 1 cut(s) 12
TasI AATT 2 cut(s) 354, 421
TatI WGTACW 1 cut(s) 263
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 2 cut(s) 16, 53
Tru1I TTAA 2 cut(s) 26, 465
Tru9I TTAA 2 cut(s) 26, 465
TscAI CASTG 2 cut(s) 103, 136
TseI GCWGC 2 cut(s) 152, 381
TspDTI ATGAA 2 cut(s) 311, 447
TspGWI ACGGA 3 cut(s) 49, 95, 239
TspRI CASTG 2 cut(s) 103, 136
XagI CCTNNNNNAGG 1 cut(s) 194
XapI RAATTY 2 cut(s) 354, 421
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.