FvH4_1g26720
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013233
Physical Location & Seq
Forward (+)
18556925 .. 18558455
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26720.t1

Sequence Viewer

Length: 936 bp
ATGGATCATGTTGATCAGTACTTACTGGGAGGTTACACCTCATTATCTGTAACTGATCATGATCGGTTACCAAGCTGTGATCCAGAAGAAGATCTGCGAAAAGGGCCGTGGACAGTTGAGGAAGACTCCATTCTCATGGAGTACATCAACACTCACGGCGAGGGTCGGTGGAATTCACTGGCCGGAAACTCGGGACTGAAACGAAGCGGCAAAAGCTGCAGACTGAGATGGTTGAACTACTTGCGCCCAAACGTTCGACGTGGAAATATTACCCTCCAAGAACAGCTTTTGATTCTTCAACTCCATTCTAGCTGGGGAAATAGGTGGTCGAAGATAGCGGAATACTTGCCGGGAAGAACAGACAATGAGATCAAGAACTACTGGAGAACAAGAGTCCAAAAGCAAGCAAAGCATCTCAATTGTGACGTTAACAGCAAACAATTCCAGGACGCCATGCGTTACGTGTGGATTCCACGCTTAATGGAAAGGATCCGGGCTTCACCCGATTCTACGACTTTGTTATCGGGTCAAACCACCGCAACCGCAACCGCCACCGCCACCTCATTTACACCAACAGATGACTACAGCCTCTCTGACCAAAGTAACACGGCGGCTGCTGGGTCTACTCACTACCTGCCCGAGACGTCTGCAACTTCGTCCGGTTCAACGGGACTTCAAGATTGTTTGAATTATATTGGAGAGCCTACCAGAACTGAGTTCAGTGAGCTCATCAACTATTATCCAACGAACGGGCAATACTATTCTTCAACAAATTACGGGTCCGGTTGTTACCAATTAGATGATTCGGATTTTCAAGGTTCCGAGCAAATAGAAAGCAGCAACAGTTGGTCAACTCCTGGTGGGGATGACTCGGTGGATAATTTATGGAATGAAGAGAATATATGGTTCTTGCAACAACAGCTTAATAGCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

312

Amino Acids

35.24

Weight (kDa)

4.85

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 34 - 81 7.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 37 - 94 8.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 87 - 130 1.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 91 - 138 1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47190
fragaria_vesca FvH4_1g26720
malus_domestica MD09G1286900.v1.1 MD17G1279200.v1.1
prunus_persica Prupe.3G006300_v2.0.a1
pyrus_communis pycom17g27710
rosa_chinensis RchiOBHm_Chr3g0486901
rosa_laevigata RLG00000023046
rosa_multiflora Rmu_sc0000501.1_g000017 Rmu_sc0003470.1_g000020
rosa_roxburghii Rroxscaffold_6G00395370
rosa_rugosa Rorug03G0228600 Rorug03G0228700
rosa_samantha Rh3AG278000 Rh3BG313800 Rh3CG312200 Rh3DG308500
rosa_wichuraiana Rw3G024680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 647
Acc36I ACCTGC 1 cut(s) 642
AccI GTMKAC 1 cut(s) 623
AciI CCGC 7 cut(s) 207, 338, 537, 543, 549, 555, 611
AclI AACGTT 1 cut(s) 252
AclWI GGATC 4 cut(s) 12, 74, 484, 497
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 1 cut(s) 172
AcyI GRCGYC 2 cut(s) 450, 644
AfaI GTAC 2 cut(s) 20, 143
AfiI CCNNNNNNNGG 1 cut(s) 749
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 7 cut(s) 235, 299, 666, 677, 688, 768, 815
AjiI CACGTC 1 cut(s) 260
AjnI CCWGG 2 cut(s) 444, 856
AluBI AGCT 6 cut(s) 75, 216, 286, 312, 727, 922
AluI AGCT 6 cut(s) 75, 216, 286, 312, 727, 922
Alw21I GWGCWC 1 cut(s) 729
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 4 cut(s) 12, 74, 484, 497
Ama87I CYCGRG 2 cut(s) 190, 638
AoxI GGCC 2 cut(s) 104, 180
ApeKI GCWGC 3 cut(s) 216, 614, 837
ApoI RAATTY 1 cut(s) 172
ArsI GACNNNNNNTTYG 2 cut(s) 764, 796
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 2 cut(s) 104, 780
AsuC2I CCSGG 2 cut(s) 351, 494
AsuHPI GGTGA 1 cut(s) 492
AvaI CYCGRG 2 cut(s) 190, 638
AvaII GGWCC 1 cut(s) 780
BamHI GGATCC 1 cut(s) 489
BanII GRGCYC 1 cut(s) 729
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 729
BbvI GCAGC 3 cut(s) 203, 601, 849
BccI CCATC 1 cut(s) 222
BceAI ACGGC 3 cut(s) 91, 172, 624
BcgI CGANNNNNNTGC 2 cut(s) 629, 663
BciT130I CCWGG 2 cut(s) 446, 858
BclI TGATCA 2 cut(s) 13, 55
BcnI CCSGG 2 cut(s) 351, 494
BcoDI GTCTC 1 cut(s) 635
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 2 cut(s) 217, 583
BfuAI ACCTGC 1 cut(s) 642
BglII AGATCT 1 cut(s) 91
BisI GCNGC 5 cut(s) 208, 217, 612, 615, 838
BlsI GCNGC 5 cut(s) 209, 218, 613, 616, 839
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 4 cut(s) 351, 446, 494, 858
Bme18I GGWCC 1 cut(s) 780
BmeT110I CYCGRG 2 cut(s) 190, 638
BmgBI CACGTC 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 104, 780
BmiI GGNNCC 3 cut(s) 491, 781, 820
BmrFI CCNGG 4 cut(s) 351, 446, 494, 858
BmrI ACTGGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 129
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpmI CTGGAG 1 cut(s) 403
BpuMI CCSGG 2 cut(s) 351, 494
BsaAI YACGTR 1 cut(s) 463
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 2 cut(s) 450, 644
BsaJI CCNNGG 1 cut(s) 107
BsaWI WCCGGW 2 cut(s) 659, 782
Bsc4I CCNNNNNNNGG 1 cut(s) 749
Bse1I ACTGG 3 cut(s) 30, 183, 386
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 2 cut(s) 446, 858
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 871
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 749
BseMII CTCAG 2 cut(s) 215, 705
BseNI ACTGG 3 cut(s) 30, 183, 386
BseXI GCAGC 3 cut(s) 203, 601, 849
BseYI CCCAGC 2 cut(s) 312, 617
BshFI GGCC 2 cut(s) 106, 182
BsiHKAI GWGCWC 1 cut(s) 729
BsiHKCI CYCGRG 2 cut(s) 190, 638
BsiSI CCGG 5 cut(s) 183, 350, 493, 660, 783
BslFI GGGAC 2 cut(s) 207, 684
BslI CCNNNNNNNGG 1 cut(s) 749
BsmAI GTCTC 1 cut(s) 635
BsmBI CGTCTC 1 cut(s) 635
BsmFI GGGAC 2 cut(s) 207, 684
BsnI GGCC 2 cut(s) 106, 182
BsoBI CYCGRG 2 cut(s) 190, 638
Bsp1286I GDGCHC 1 cut(s) 729
Bsp143I GATC 8 cut(s) 4, 13, 55, 61, 79, 91, 369, 489
BspACI CCGC 7 cut(s) 207, 338, 537, 543, 549, 555, 611
BspANI GGCC 2 cut(s) 106, 182
BspCNI CTCAG 2 cut(s) 216, 706
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 3 cut(s) 491, 781, 820
BspMAI CTGCAG 1 cut(s) 221
BspMI ACCTGC 1 cut(s) 642
BspPI GGATC 4 cut(s) 12, 74, 484, 497
BsrI ACTGG 3 cut(s) 30, 183, 386
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 8 cut(s) 4, 13, 55, 61, 79, 91, 369, 489
BssNI GRCGYC 2 cut(s) 450, 644
Bst2UI CCWGG 2 cut(s) 446, 858
Bst4CI ACNGT 2 cut(s) 115, 845
Bst6I CTCTTC 1 cut(s) 888
BstACI GRCGYC 2 cut(s) 450, 644
BstAPI GCANNNNNTGC 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 463
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 224, 714
BstDSI CCRYGG 1 cut(s) 107
BstEII GGTNACC 1 cut(s) 66
BstF5I GGATG 1 cut(s) 871
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 8 cut(s) 7, 16, 58, 64, 82, 94, 372, 492
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 8 cut(s) 4, 13, 55, 61, 79, 91, 369, 489
BstMWI GCNNNNNNNGC 5 cut(s) 103, 213, 216, 409, 919
BstNI CCWGG 2 cut(s) 446, 858
BstPI GGTNACC 1 cut(s) 66
BstSCI CCNGG 4 cut(s) 349, 444, 492, 856
BstSFI CTRYAG 2 cut(s) 217, 583
BstV1I GCAGC 3 cut(s) 203, 601, 849
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 2 cut(s) 91, 489
BstXI CCANNNNNNTGG 1 cut(s) 136
BstYI RGATCY 2 cut(s) 91, 489
BsuRI GGCC 2 cut(s) 106, 182
BtgI CCRYGG 1 cut(s) 107
BtrI CACGTC 1 cut(s) 260
BtsCI GGATG 1 cut(s) 871
BtsIMutI CAGTG 2 cut(s) 176, 727
BveI ACCTGC 1 cut(s) 642
Cac8I GCNNGC 1 cut(s) 405
CciI TCATGA 1 cut(s) 58
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 2 cut(s) 104, 780
CseI GACGC 1 cut(s) 458
Csp6I GTAC 2 cut(s) 19, 142
CviAII CATG 4 cut(s) 8, 59, 136, 454
CviQI GTAC 2 cut(s) 19, 142
DdeI CTNAG 2 cut(s) 224, 714
DpnI GATC 8 cut(s) 6, 15, 57, 63, 81, 93, 371, 491
DpnII GATC 8 cut(s) 4, 13, 55, 61, 79, 91, 369, 489
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 888
EarI CTCTTC 1 cut(s) 888
Ecl136II GAGCTC 1 cut(s) 727
Eco24I GRGCYC 1 cut(s) 729
Eco47I GGWCC 1 cut(s) 780
Eco53kI GAGCTC 1 cut(s) 727
Eco88I CYCGRG 2 cut(s) 190, 638
Eco91I GGTNACC 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 727
EcoO65I GGTNACC 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 444, 856
EcoT38I GRGCYC 1 cut(s) 729
Esp3I CGTCTC 1 cut(s) 635
FaeI CATG 4 cut(s) 11, 62, 139, 457
FaiI YATR 8 cut(s) 9, 60, 137, 455, 693, 886, 902, 904
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FaqI GGGAC 2 cut(s) 207, 684
FatI CATG 4 cut(s) 7, 58, 135, 453
FbaI TGATCA 2 cut(s) 13, 55
FblI GTMKAC 1 cut(s) 623
Fnu4HI GCNGC 5 cut(s) 208, 217, 612, 615, 838
FokI GGATG 1 cut(s) 878
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 5 cut(s) 208, 217, 612, 615, 838
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 245
GluI GCNGC 5 cut(s) 208, 217, 612, 615, 838
GsaI CCCAGC 2 cut(s) 316, 621
GsuI CTGGAG 1 cut(s) 403
HaeIII GGCC 2 cut(s) 106, 182
HapII CCGG 5 cut(s) 183, 350, 493, 660, 783
HgaI GACGC 1 cut(s) 458
HhaI GCGC 1 cut(s) 246
Hin1I GRCGYC 2 cut(s) 450, 644
Hin1II CATG 4 cut(s) 11, 62, 139, 457
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HincII GTYRAC 2 cut(s) 430, 852
HindII GTYRAC 2 cut(s) 430, 852
HinfI GANTC 7 cut(s) 125, 292, 393, 469, 506, 803, 869
HpaI GTTAAC 1 cut(s) 430
HpaII CCGG 5 cut(s) 183, 350, 493, 660, 783
HphI GGTGA 1 cut(s) 492
Hpy166II GTNNAC 4 cut(s) 111, 430, 624, 852
Hpy188I TCNGA 3 cut(s) 595, 808, 823
Hpy188III TCNNGA 5 cut(s) 59, 83, 192, 373, 677
Hpy8I GTNNAC 4 cut(s) 111, 430, 624, 852
Hpy99I CGWCG 1 cut(s) 261
HpyCH4III ACNGT 2 cut(s) 115, 845
HpyCH4IV ACGT 5 cut(s) 252, 259, 426, 462, 644
HpyCH4V TGCA 3 cut(s) 219, 650, 913
HpyF10VI GCNNNNNNNGC 5 cut(s) 103, 213, 216, 409, 919
HpyF3I CTNAG 2 cut(s) 224, 714
HpySE526I ACGT 5 cut(s) 252, 259, 426, 462, 644
Hsp92I GRCGYC 2 cut(s) 450, 644
Hsp92II CATG 4 cut(s) 11, 62, 139, 457
HspAI GCGC 1 cut(s) 244
Ksp22I TGATCA 2 cut(s) 13, 55
KspAI GTTAAC 1 cut(s) 430
Kzo9I GATC 8 cut(s) 4, 13, 55, 61, 79, 91, 369, 489
Lsp1109I GCAGC 3 cut(s) 203, 601, 849
LweI GCATC 1 cut(s) 421
MaeI CTAG 1 cut(s) 309
MaeII ACGT 5 cut(s) 252, 259, 426, 462, 644
MaeIII GTNAC 7 cut(s) 32, 49, 66, 422, 458, 602, 788
MalI GATC 8 cut(s) 6, 15, 57, 63, 81, 93, 371, 491
MboI GATC 8 cut(s) 4, 13, 55, 61, 79, 91, 369, 489
MboII GAAGA 8 cut(s) 98, 101, 134, 287, 343, 366, 756, 905
MfeI CAATTG 1 cut(s) 418
MflI RGATCY 2 cut(s) 91, 489
MhlI GDGCHC 1 cut(s) 729
MluCI AATT 7 cut(s) 172, 418, 440, 688, 772, 794, 880
MlyI GAGTC 3 cut(s) 119, 402, 863
MmeI TCCRAC 1 cut(s) 767
MnlI CCTC 7 cut(s) 23, 49, 112, 154, 284, 571, 599
MseI TTAA 3 cut(s) 429, 479, 924
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 5 cut(s) 183, 350, 493, 660, 783
MspR9I CCNGG 4 cut(s) 351, 446, 494, 858
MunI CAATTG 1 cut(s) 418
MvaI CCWGG 2 cut(s) 446, 858
MwoI GCNNNNNNNGC 5 cut(s) 103, 213, 216, 409, 919
NciI CCSGG 2 cut(s) 351, 494
NdeII GATC 8 cut(s) 4, 13, 55, 61, 79, 91, 369, 489
NlaIII CATG 4 cut(s) 11, 62, 139, 457
NlaIV GGNNCC 3 cut(s) 491, 781, 820
NmuCI GTSAC 1 cut(s) 422
PagI TCATGA 1 cut(s) 58
PfeI GAWTC 4 cut(s) 292, 469, 506, 803
PfoI TCCNGGA 1 cut(s) 444
PkrI GCNGC 5 cut(s) 209, 218, 613, 616, 839
PleI GAGTC 3 cut(s) 119, 401, 863
PpsI GAGTC 3 cut(s) 119, 401, 863
Ppu21I YACGTR 1 cut(s) 463
Psp124BI GAGCTC 1 cut(s) 729
Psp1406I AACGTT 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 444, 856
PspEI GGTNACC 1 cut(s) 66
PspFI CCCAGC 2 cut(s) 312, 617
PspGI CCWGG 2 cut(s) 444, 856
PspN4I GGNNCC 3 cut(s) 491, 781, 820
PspPI GGNCC 2 cut(s) 104, 780
PsrI GAACNNNNNNTAC 2 cut(s) 740, 772
PstI CTGCAG 1 cut(s) 221
PsuI RGATCY 2 cut(s) 91, 489
RsaI GTAC 2 cut(s) 20, 143
RsaNI GTAC 2 cut(s) 19, 142
RseI CAYNNNNRTG 1 cut(s) 134
SacI GAGCTC 1 cut(s) 729
SaqAI TTAA 3 cut(s) 429, 479, 924
SatI GCNGC 5 cut(s) 208, 217, 612, 615, 838
Sau3AI GATC 8 cut(s) 4, 13, 55, 61, 79, 91, 369, 489
Sau96I GGNCC 2 cut(s) 104, 780
ScaI AGTACT 1 cut(s) 20
SchI GAGTC 3 cut(s) 119, 402, 863
ScrFI CCNGG 4 cut(s) 351, 446, 494, 858
SduI GDGCHC 1 cut(s) 729
SfaNI GCATC 1 cut(s) 421
SfcI CTRYAG 2 cut(s) 217, 583
SinI GGWCC 1 cut(s) 780
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 7 cut(s) 172, 418, 440, 688, 772, 794, 880
SsiI CCGC 7 cut(s) 207, 338, 537, 543, 549, 555, 611
SspI AATATT 1 cut(s) 268
SspMI CTAG 1 cut(s) 309
SstI GAGCTC 1 cut(s) 729
StyD4I CCNGG 4 cut(s) 349, 444, 492, 856
TaaI ACNGT 2 cut(s) 115, 845
TaiI ACGT 5 cut(s) 255, 262, 429, 465, 647
TaqI TCGA 2 cut(s) 256, 329
TasI AATT 7 cut(s) 172, 418, 440, 688, 772, 794, 880
TatI WGTACW 2 cut(s) 18, 141
TauI GCSGC 2 cut(s) 210, 614
TfiI GAWTC 4 cut(s) 292, 469, 506, 803
Tru1I TTAA 3 cut(s) 429, 479, 924
Tru9I TTAA 3 cut(s) 429, 479, 924
TscAI CASTG 2 cut(s) 183, 727
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 3 cut(s) 216, 614, 837
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 1 cut(s) 906
TspRI CASTG 2 cut(s) 183, 727
VpaK11BI GGWCC 1 cut(s) 780
XapI RAATTY 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 623
XspI CTAG 1 cut(s) 309
ZraI GACGTC 1 cut(s) 645
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.