Rorug03G0228600
MYB Family

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004371
Physical Location & Seq
Reverse (-)
20965043 .. 20969151
4109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0228600.1

Sequence Viewer

Length: 276 bp
ATGGAGGTTGATGAGAAACCAACTGAAGATTACAATGATATTGGAGGGCTAGAGAAACAGATTCAAGAACTGGTTGAGGCAATTGTTTTACCCATGACCCACAAGGAGCGTTTTCAGAAATTAGGGGTTCGCCCACCAAAGGGAGTTCTTTTGTATGGACCTCCTGGAACTGGTAAAACTTTAATGGCCCGGGCTTGTGCTGCACAAACGAATGCCACTTTTCTGAAACTTGCAGGTCCACAACTGGTTCAGATTTCCTTTGCCTTATCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

91

Amino Acids

9.91

Weight (kDa)

6.56

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 49 - 83 2e-10 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 45
AfiI CCNNNNNNNGG 3 cut(s) 139, 140, 170
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 200
AspS9I GGNCC 3 cut(s) 158, 187, 236
AsuC2I CCSGG 2 cut(s) 190, 191
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 2 cut(s) 158, 236
BbvI GCAGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 165
BcnI CCSGG 2 cut(s) 190, 191
BfaI CTAG 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 224
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 3 cut(s) 165, 190, 191
Bme18I GGWCC 2 cut(s) 158, 236
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 3 cut(s) 158, 187, 236
BmrFI CCNGG 3 cut(s) 165, 190, 191
BpuMI CCSGG 2 cut(s) 190, 191
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 140, 170
Bse1I ACTGG 3 cut(s) 75, 175, 249
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 189
BseLI CCNNNNNNNGG 3 cut(s) 139, 140, 170
BseNI ACTGG 3 cut(s) 75, 175, 249
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 1 cut(s) 190
BslI CCNNNNNNNGG 3 cut(s) 139, 140, 170
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 189
BspANI GGCC 1 cut(s) 188
BspMI ACCTGC 1 cut(s) 224
BsrI ACTGG 3 cut(s) 75, 175, 249
BssECI CCNNGG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 3 cut(s) 163, 188, 189
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 188
BveI ACCTGC 1 cut(s) 224
Cfr13I GGNCC 3 cut(s) 158, 187, 236
Cfr9I CCCGGG 1 cut(s) 189
CviAII CATG 1 cut(s) 94
CviJI RGCY 3 cut(s) 49, 188, 194
CviKI_1 RGCY 3 cut(s) 49, 188, 194
Eco47I GGWCC 2 cut(s) 158, 236
Eco57I CTGAAG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 163
FaeI CATG 1 cut(s) 97
FaiI YATR 2 cut(s) 95, 156
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 50
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 190
Hin1II CATG 1 cut(s) 97
HinfI GANTC 1 cut(s) 61
HpaII CCGG 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 3 cut(s) 117, 225, 252
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 203, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
Hsp92II CATG 1 cut(s) 97
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 7 cut(s) 56, 150, 156, 177, 203, 219, 230
Lsp1109I GCAGC 1 cut(s) 187
MaeI CTAG 1 cut(s) 50
MboII GAAGA 1 cut(s) 38
MfeI CAATTG 1 cut(s) 81
MluCI AATT 2 cut(s) 81, 119
MnlI CCTC 3 cut(s) 38, 70, 171
MseI TTAA 1 cut(s) 182
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 3 cut(s) 165, 190, 191
MunI CAATTG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 200
NciI CCSGG 2 cut(s) 190, 191
NlaIII CATG 1 cut(s) 97
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspPI GGNCC 3 cut(s) 158, 187, 236
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 1 cut(s) 201
Sau96I GGNCC 3 cut(s) 158, 187, 236
ScrFI CCNGG 3 cut(s) 165, 190, 191
SetI ASST 3 cut(s) 9, 163, 238
SinI GGWCC 2 cut(s) 158, 236
SmaI CCCGGG 1 cut(s) 191
SrfI GCCCGGGC 1 cut(s) 191
Sse9I AATT 2 cut(s) 81, 119
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 3 cut(s) 163, 188, 189
TasI AATT 2 cut(s) 81, 119
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TseI GCWGC 1 cut(s) 200
TspMI CCCGGG 1 cut(s) 189
VpaK11BI GGWCC 2 cut(s) 158, 236
XmaI CCCGGG 1 cut(s) 189
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.