FvH4_1g26710

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004371
Physical Location & Seq
Reverse (-)
18545085 .. 18549708
4624 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26710.t6

Sequence Viewer

Length: 657 bp
ATGTCTGCTGCTTCTGCAACCGCTGTAGCAGCCTACATATCTAGACTAAACTGTACCAGTCTCACCCACGTACCCGTTTGGAGGAGCCCTTCTTCTCTAAGACCACAGCCGTCTCTTACTCGCATCTTCTTCAAAATCCCATGTGGATTTTCCCAGCAAAGCTCGGTCCTCACTGGATTCAGACGTCTTTCCCCTGTTATGCAATGGCAGGACTGCACAGTAAAGACGGAAATTGATGTGCCTATTTCAGTTGCATATGATTGTTACTCTGATCGTGAGGCAATTCCCCAATGGATGCCCTTTATTTCTACGGTAAAGGTATTAGAAGACAAGCCTGATCTATCACGATGGTCGCTTAAGTATAGAGCTTTTGGGCGTGATATTGAATTCTCATGGCTTGCTCGAAATATGCAGCCAACCCGAAATCAGAAAATCCACTGGAGATCTCTGGAAGGTCTTCCTAACAGAGGCGCTGTTCGTTTTTATCCAAAAGGTTCATCGTCATGCATAGTAGAACTAACCGTCTCTTATGAAGTTCCTGCAATTTTGGTTCCAGTGGCATCAGCACTGCAACCTTTTACTGAAAGTTTACTTGCACGCGGCTTGGAAAGGTTTGCAACATTTGCGAAAAGCTACAAATCGGACTCAACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

219

Amino Acids

24.59

Weight (kDa)

9.53

Isoelectric Point (pI)

66.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 78 - 140 4.1e-08 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 187
AccII CGCG 1 cut(s) 600
AciI CCGC 2 cut(s) 21, 600
AcsI RAATTY 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 184
AfaI GTAC 2 cut(s) 55, 72
AfiI CCNNNNNNNGG 2 cut(s) 81, 467
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 2 cut(s) 133, 386
AluBI AGCT 3 cut(s) 162, 368, 633
AluI AGCT 3 cut(s) 162, 368, 633
Alw26I GTCTC 3 cut(s) 65, 117, 529
ApeKI GCWGC 3 cut(s) 8, 29, 412
ApoI RAATTY 1 cut(s) 386
Asp700I GAANNNNTTC 1 cut(s) 456
AspLEI GCGC 1 cut(s) 473
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 166
BaeI ACNNNNGTAYC 2 cut(s) 54, 87
BanII GRGCYC 1 cut(s) 89
BbsI GAAGAC 2 cut(s) 333, 449
BbvI GCAGC 2 cut(s) 41, 424
BccI CCATC 1 cut(s) 342
BceAI ACGGC 1 cut(s) 94
BcoDI GTCTC 3 cut(s) 65, 117, 529
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 24
BfoI RGCGCY 1 cut(s) 474
BfrI CTTAAG 1 cut(s) 356
BglII AGATCT 1 cut(s) 443
BisI GCNGC 4 cut(s) 9, 30, 413, 601
BlsI GCNGC 4 cut(s) 10, 31, 414, 602
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 2 cut(s) 86, 552
BmsI GCATC 3 cut(s) 132, 285, 569
BpiI GAAGAC 2 cut(s) 333, 449
BpmI CTGGAG 1 cut(s) 460
BsaAI YACGTR 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 467
Bse1I ACTGG 4 cut(s) 57, 178, 443, 554
Bse3DI GCAATG 1 cut(s) 209
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 2 cut(s) 81, 467
BseMI GCAATG 1 cut(s) 209
BseNI ACTGG 4 cut(s) 57, 178, 443, 554
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 2 cut(s) 41, 424
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 600
BslI CCNNNNNNNGG 2 cut(s) 81, 467
BsmAI GTCTC 3 cut(s) 65, 117, 529
BsmBI CGTCTC 2 cut(s) 117, 529
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 3 cut(s) 271, 337, 443
BspACI CCGC 2 cut(s) 21, 600
BspFNI CGCG 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 86, 552
BspTI CTTAAG 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 209
BsrI ACTGG 4 cut(s) 57, 178, 443, 554
BssMI GATC 3 cut(s) 271, 337, 443
BssNI GRCGYC 1 cut(s) 184
Bst4CI ACNGT 5 cut(s) 53, 220, 313, 523, 652
BstACI GRCGYC 1 cut(s) 184
BstAFI CTTAAG 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 623
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 399, 598
BstDEI CTNAG 1 cut(s) 98
BstENI CCTNNNNNAGG 1 cut(s) 465
BstF5I GGATG 1 cut(s) 300
BstFNI CGCG 1 cut(s) 600
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 3 cut(s) 274, 340, 446
BstMAI GTCTC 3 cut(s) 65, 117, 529
BstMBI GATC 3 cut(s) 271, 337, 443
BstMWI GCNNNNNNNGC 3 cut(s) 14, 29, 623
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 1 cut(s) 600
BstV1I GCAGC 2 cut(s) 41, 424
BstV2I GAAGAC 2 cut(s) 333, 449
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BtsCI GGATG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 4 cut(s) 171, 436, 561, 566
Cac8I GCNNGC 2 cut(s) 399, 598
CfoI GCGC 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 2 cut(s) 54, 71
CviAII CATG 3 cut(s) 141, 393, 504
CviQI GTAC 2 cut(s) 54, 71
DdeI CTNAG 1 cut(s) 98
DpnI GATC 3 cut(s) 273, 339, 445
DpnII GATC 3 cut(s) 271, 337, 443
Eco24I GRGCYC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 386
EcoT22I ATGCAT 1 cut(s) 509
EcoT38I GRGCYC 1 cut(s) 89
Esp3I CGTCTC 2 cut(s) 117, 529
FaeI CATG 3 cut(s) 144, 396, 507
FatI CATG 3 cut(s) 140, 392, 503
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 4 cut(s) 9, 30, 413, 601
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 4 cut(s) 9, 30, 413, 601
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 472
GluI GCNGC 4 cut(s) 9, 30, 413, 601
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 460
HaeII RGCGCY 1 cut(s) 474
HhaI GCGC 1 cut(s) 473
Hin1I GRCGYC 1 cut(s) 184
Hin1II CATG 3 cut(s) 144, 396, 507
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HinfI GANTC 2 cut(s) 177, 644
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 590
Hpy188I TCNGA 4 cut(s) 182, 271, 429, 643
Hpy188III TCNNGA 4 cut(s) 42, 275, 345, 449
Hpy8I GTNNAC 1 cut(s) 590
HpyAV CCTTC 2 cut(s) 99, 446
HpyCH4III ACNGT 5 cut(s) 53, 220, 313, 523, 652
HpyCH4IV ACGT 2 cut(s) 69, 184
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 29, 623
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 2 cut(s) 69, 184
Hsp92I GRCGYC 1 cut(s) 184
Hsp92II CATG 3 cut(s) 144, 396, 507
HspAI GCGC 1 cut(s) 471
Kzo9I GATC 3 cut(s) 271, 337, 443
LmnI GCTCC 1 cut(s) 84
Lsp1109I GCAGC 2 cut(s) 41, 424
LweI GCATC 3 cut(s) 132, 285, 569
MaeI CTAG 1 cut(s) 42
MaeII ACGT 2 cut(s) 69, 184
MaeIII GTNAC 1 cut(s) 263
MalI GATC 3 cut(s) 273, 339, 445
MboI GATC 3 cut(s) 271, 337, 443
MboII GAAGA 5 cut(s) 84, 118, 121, 338, 449
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 4 cut(s) 231, 282, 386, 543
MlyI GAGTC 1 cut(s) 638
MnlI CCTC 4 cut(s) 75, 179, 271, 461
Mph1103I ATGCAT 1 cut(s) 509
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 502
MspA1I CMGCKG 1 cut(s) 23
MspCI CTTAAG 1 cut(s) 356
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 3 cut(s) 14, 29, 623
NdeI CATATG 1 cut(s) 256
NdeII GATC 3 cut(s) 271, 337, 443
NlaIII CATG 3 cut(s) 144, 396, 507
NlaIV GGNNCC 2 cut(s) 86, 552
NsiI ATGCAT 1 cut(s) 509
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 4 cut(s) 10, 31, 414, 602
PleI GAGTC 1 cut(s) 638
PpsI GAGTC 1 cut(s) 638
Ppu21I YACGTR 1 cut(s) 70
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 86, 552
PspPI GGNCC 1 cut(s) 166
PsuI RGATCY 1 cut(s) 443
RsaI GTAC 2 cut(s) 55, 72
RsaNI GTAC 2 cut(s) 54, 71
RseI CAYNNNNRTG 1 cut(s) 502
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 4 cut(s) 9, 30, 413, 601
Sau3AI GATC 3 cut(s) 271, 337, 443
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 638
SduI GDGCHC 1 cut(s) 89
SfaNI GCATC 3 cut(s) 132, 285, 569
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 502
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 231, 282, 386, 543
SsiI CCGC 2 cut(s) 21, 600
SspMI CTAG 1 cut(s) 42
TaaI ACNGT 5 cut(s) 53, 220, 313, 523, 652
TaiI ACGT 2 cut(s) 72, 187
TaqI TCGA 1 cut(s) 403
TaqII GACCGA 1 cut(s) 154
TasI AATT 4 cut(s) 231, 282, 386, 543
TauI GCSGC 1 cut(s) 603
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 4 cut(s) 178, 443, 561, 573
TseI GCWGC 3 cut(s) 8, 29, 412
TspDTI ATGAA 2 cut(s) 486, 546
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 4 cut(s) 178, 443, 561, 573
Vha464I CTTAAG 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 166
XagI CCTNNNNNAGG 1 cut(s) 465
XapI RAATTY 1 cut(s) 386
XbaI TCTAGA 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 1 cut(s) 42
ZraI GACGTC 1 cut(s) 185
Zsp2I ATGCAT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.