Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004371

Physical Location & Seq

Genomic Coordinates Reverse (-)

31901477 .. 31904277

Gene Structure 2801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G024670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCTGCTGCTTCTGCAACCGCTGTAGCAGCCTACATTTCTAGACCAAACTGTACCAGTCTCAGCCACGTACCCGTTTGGAGAAGCTCTTCTTCTCTAAAACCACAGCCGTCTCTTACTCGCATCTTCTTCAAAATTCCCATGTGGGTTTTCCAAGCGAAGCTCGGTCTTCACTGGATTCAGACCTCTTTCCCCTGTTATGGAATGGCAGGACTGCACGTAATTTCCATCTCTTATTGCTTTGAGAATATAGATTCTTATTTATGTCTGAAATTAATTTGTTCGGTAAAGACGAAAATTGATGTGCCTATTTCAGTCGCATATGATTGTTACTCTGATCGTGAGGCCATTCCCCAGTGGATGCCCTTTATTTCTACTGTAAAGGTATTGGAAGACAAGCCTGACCTATCACGATGGTCACTTAAGTATAGGGCTTTTGGGCGTGATATTGAATTCTCATGGCTTGCTCGAAATATGCAGCCCACCCGAAATCAGAAAATCCACTGGAGATCTCTGGAAGGTCTTCCTAACAGAGGCGCTGTTCGTTTTTATCCAAAAGGTCCTTCGTCATGCATAGTAGAATTAACAGTCTCTTACGAAGTTCCTGCAATTTTGGCTCCAGTGGCGTCAGCACTGCAACCTTTTACTGCAAGTTTACTTGGACGTGGCTTGGAAAGGTTTGCAACATTTGCAAAAAGCTACAAATCGGACTCAGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

240

Amino Acids

26.97

Weight (kDa)

9.43

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	96 - 229	4e-08	Polyketide cyclase / dehydrase and lipid transport
Polyketide_cyc	PF03364	100 - 221	8.9e-14	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02475 AT4G01883 AT4G01883 AT4G01883
fragaria_vesca	FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710
malus_domestica	MD09G1287000.v1.1 MD17G1279300.v1.1
prunus_persica	Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1
pyrus_communis	pycom09g19410 pycom17g27720
rosa_chinensis	RchiOBHm_Chr3g0486891
rosa_laevigata	RLG00000023048
rosa_multiflora	Rmu_sc0003470.1_g000011
rosa_roxburghii	Rroxscaffold_6G00395420
rosa_rugosa	Rorug03G0228600 Rorug03G0228600 Rorug03G0228600
rosa_samantha	Rh3AG277800 Rh3BG313600 Rh3CG311900 Rh3DG308400
rosa_wichuraiana	Rw3G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	135, 452
AcyI	GRCGYC	1 cut(s)	626
AfaI	GTAC	2 cut(s)	55, 72
AfiI	CCNNNNNNNGG	2 cut(s)	200, 533
AflII	CTTAAG	1 cut(s)	422
AgsI	TTSAA	2 cut(s)	133, 452
AjiI	CACGTC	1 cut(s)	665
AjuI	GAANNNNNNNTTGG	2 cut(s)	547, 579
AluBI	AGCT	4 cut(s)	87, 163, 699, 716
AluI	AGCT	4 cut(s)	87, 163, 699, 716
Alw26I	GTCTC	3 cut(s)	65, 117, 595
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	3 cut(s)	8, 29, 478
ApoI	RAATTY	2 cut(s)	135, 452
AseI	ATTAAT	1 cut(s)	275
Asp700I	GAANNNNTTC	2 cut(s)	88, 522
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	560
BbsI	GAAGAC	3 cut(s)	161, 399, 515
BbvI	GCAGC	2 cut(s)	41, 490
BccI	CCATC	2 cut(s)	236, 408
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BcoDI	GTCTC	3 cut(s)	65, 117, 595
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	540
BfrI	CTTAAG	1 cut(s)	422
BglII	AGATCT	1 cut(s)	509
BisI	GCNGC	3 cut(s)	9, 30, 479
BlsI	GCNGC	3 cut(s)	10, 31, 480
Bme18I	GGWCC	1 cut(s)	560
BmgBI	CACGTC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	618
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	132, 351
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	3 cut(s)	161, 399, 515
BpmI	CTGGAG	2 cut(s)	526, 603
BsaAI	YACGTR	2 cut(s)	70, 220
BsaHI	GRCGYC	1 cut(s)	626
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 533
Bse1I	ACTGG	5 cut(s)	57, 179, 355, 509, 620
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	200, 533
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	5 cut(s)	57, 179, 355, 509, 620
BseXI	GCAGC	2 cut(s)	41, 490
BsgI	GTGCAG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	200, 533
BsmAI	GTCTC	3 cut(s)	65, 117, 595
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	337, 509
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	618
BspQI	GCTCTTC	1 cut(s)	94
BspTI	CTTAAG	1 cut(s)	422
BsrI	ACTGG	5 cut(s)	57, 179, 355, 509, 620
BssMI	GATC	2 cut(s)	337, 509
BssNI	GRCGYC	1 cut(s)	626
Bst4CI	ACNGT	3 cut(s)	53, 379, 589
Bst6I	CTCTTC	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	626
BstAFI	CTTAAG	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstBAI	YACGTR	2 cut(s)	70, 220
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	2 cut(s)	62, 712
BstENI	CCTNNNNNAGG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	366
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	2 cut(s)	340, 512
BstMAI	GTCTC	3 cut(s)	65, 117, 595
BstMBI	GATC	2 cut(s)	337, 509
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 29, 614, 623, 689
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	41, 490
BstV2I	GAAGAC	3 cut(s)	161, 399, 515
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
BsuRI	GGCC	1 cut(s)	347
BtrI	CACGTC	1 cut(s)	665
BtsCI	GGATG	1 cut(s)	366
BtsI	GCAGTG	1 cut(s)	632
BtsIMutI	CAGTG	5 cut(s)	172, 362, 502, 627, 632
Cac8I	GCNNGC	1 cut(s)	465
CfoI	GCGC	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	560
CseI	GACGC	1 cut(s)	615
Csp6I	GTAC	2 cut(s)	54, 71
CviAII	CATG	3 cut(s)	142, 459, 570
CviQI	GTAC	2 cut(s)	54, 71
DdeI	CTNAG	2 cut(s)	62, 712
DpnI	GATC	2 cut(s)	339, 511
DpnII	GATC	2 cut(s)	337, 509
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	560
EcoNI	CCTNNNNNAGG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRI	GAATTC	1 cut(s)	452
EcoT22I	ATGCAT	1 cut(s)	575
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	3 cut(s)	145, 462, 573
FalI	AAGNNNNNCTT	2 cut(s)	76, 108
FatI	CATG	3 cut(s)	141, 458, 569
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	3 cut(s)	9, 30, 479
FokI	GGATG	1 cut(s)	373
Fsp4HI	GCNGC	3 cut(s)	9, 30, 479
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	3 cut(s)	9, 30, 479
GsuI	CTGGAG	2 cut(s)	526, 603
HaeII	RGCGCY	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	347
HgaI	GACGC	1 cut(s)	615
HhaI	GCGC	1 cut(s)	539
Hin1I	GRCGYC	1 cut(s)	626
Hin1II	CATG	3 cut(s)	145, 462, 573
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HinfI	GANTC	3 cut(s)	178, 254, 710
Hpy166II	GTNNAC	1 cut(s)	656
Hpy188I	TCNGA	5 cut(s)	183, 270, 337, 495, 709
Hpy188III	TCNNGA	4 cut(s)	42, 341, 411, 515
Hpy8I	GTNNAC	1 cut(s)	656
HpyAV	CCTTC	2 cut(s)	512, 573
HpyCH4III	ACNGT	3 cut(s)	53, 379, 589
HpyCH4IV	ACGT	3 cut(s)	69, 219, 664
HpyCH4V	TGCA	9 cut(s)	17, 217, 478, 573, 608, 637, 650, 683, 692
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 29, 614, 623, 689
HpyF3I	CTNAG	2 cut(s)	62, 712
HpySE526I	ACGT	3 cut(s)	69, 219, 664
Hsp92I	GRCGYC	1 cut(s)	626
Hsp92II	CATG	3 cut(s)	145, 462, 573
HspAI	GCGC	1 cut(s)	537
Kzo9I	GATC	2 cut(s)	337, 509
LguI	GCTCTTC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	2 cut(s)	41, 490
LweI	GCATC	2 cut(s)	132, 351
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	3 cut(s)	69, 219, 664
MaeIII	GTNAC	2 cut(s)	329, 417
MalI	GATC	2 cut(s)	339, 511
MboI	GATC	2 cut(s)	337, 509
MboII	GAAGA	7 cut(s)	81, 84, 118, 121, 161, 404, 515
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	8 cut(s)	135, 222, 272, 276, 297, 452, 581, 609
MlyI	GAGTC	1 cut(s)	704
MnlI	CCTC	3 cut(s)	196, 337, 527
Mph1103I	ATGCAT	1 cut(s)	575
MroXI	GAANNNNTTC	2 cut(s)	88, 522
MseI	TTAA	4 cut(s)	275, 423, 584, 721
MspA1I	CMGCKG	2 cut(s)	23, 716
MspCI	CTTAAG	1 cut(s)	422
MwoI	GCNNNNNNNGC	5 cut(s)	14, 29, 614, 623, 689
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	337, 509
NlaIII	CATG	3 cut(s)	145, 462, 573
NlaIV	GGNNCC	1 cut(s)	618
NmuCI	GTSAC	1 cut(s)	417
NsiI	ATGCAT	1 cut(s)	575
PciSI	GCTCTTC	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PdmI	GAANNNNTTC	2 cut(s)	88, 522
PfeI	GAWTC	2 cut(s)	178, 254
PkrI	GCNGC	3 cut(s)	10, 31, 480
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
Ppu21I	YACGTR	2 cut(s)	70, 220
PpuMI	RGGWCCY	1 cut(s)	560
PshBI	ATTAAT	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	618
PspPI	GGNCC	1 cut(s)	560
PspPPI	RGGWCCY	1 cut(s)	560
PsuI	RGATCY	1 cut(s)	509
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	2 cut(s)	55, 72
RsaNI	GTAC	2 cut(s)	54, 71
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	4 cut(s)	275, 423, 584, 721
SatI	GCNGC	3 cut(s)	9, 30, 479
Sau3AI	GATC	2 cut(s)	337, 509
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	1 cut(s)	704
SfaNI	GCATC	2 cut(s)	132, 351
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	8 cut(s)	135, 222, 272, 276, 297, 452, 581, 609
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	1 cut(s)	42
TaaI	ACNGT	3 cut(s)	53, 379, 589
TaiI	ACGT	3 cut(s)	72, 222, 667
TaqI	TCGA	1 cut(s)	469
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	8 cut(s)	135, 222, 272, 276, 297, 452, 581, 609
TfiI	GAWTC	2 cut(s)	178, 254
Tru1I	TTAA	4 cut(s)	275, 423, 584, 721
Tru9I	TTAA	4 cut(s)	275, 423, 584, 721
TscAI	CASTG	5 cut(s)	179, 362, 509, 627, 639
TseFI	GTSAC	1 cut(s)	417
TseI	GCWGC	3 cut(s)	8, 29, 478
Tsp45I	GTSAC	1 cut(s)	417
TspRI	CASTG	5 cut(s)	179, 362, 509, 627, 639
Vha464I	CTTAAG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	560
VspI	ATTAAT	1 cut(s)	275
XagI	CCTNNNNNAGG	1 cut(s)	531
XapI	RAATTY	2 cut(s)	135, 452
XbaI	TCTAGA	1 cut(s)	41
XmnI	GAANNNNTTC	2 cut(s)	88, 522
XspI	CTAG	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.