Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004371

Physical Location & Seq

Genomic Coordinates Forward (+)

36587205 .. 36590298

Gene Structure 3094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1287000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCTTGTGCTTCTGCAACTGCTGTAGCATCAGTCTACATTTCCGGCCCGAACTGTCCCGGCAGTCTTACCCACGTACCCATTTGGAGAAGCTCTTCTCTCAGACCACCGCCGCCGTCTTCTCTCGGCGACTTCTCCTTCAAGATCCCATGTGGGTCTTTCAGGCGGAGCTCCGTCCTCACTGGATTCAGAAGTACTTCCCCCGTCGTTATGCAATGGCAGGACTGCACAGTAAAGATGGAAATTGATGTGCCTATTTCCGTTGCATATGATTGTTACTCTGATCGTGAGGCGATTCCCCGTTGGATGCCTTTTATTTCAACCGTGAAGATATTGGAAGACCAGCCTGACCTATCACGATGGTCACTGAAGTATAAAGCTTTTGGTCGTAATATTGAATTCTCATGGCTTGCTCGGAATATGCAGCCTACACCAAATCAGAAAATCCACTGGAGATCTCTAGAAGGGCTTCCTAACAGAGGTGCTGTTAGGTTCTATCCGAAAGGTCCTTCATCATGCTTAGTAGAACTAACGGTGTCATATGAAGTTCCGCCAATTCTGTCTCCAGTGGCATCAGCGCTTCAACCATTTCTTGAAAATTTACTTGGACGTGGCTTGGAAAGGTTTGCGACATTTGCAAGAACCTACAAAACAGACTCACCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

223

Amino Acids

24.8

Weight (kDa)

9.23

Isoelectric Point (pI)

74.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	77 - 211	1.8e-09	Polyketide cyclase / dehydrase and lipid transport
Polyketide_cyc	PF03364	82 - 209	1.2e-14	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02475 AT4G01883 AT4G01883 AT4G01883
fragaria_vesca	FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710
malus_domestica	MD09G1287000.v1.1 MD17G1279300.v1.1
prunus_persica	Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1
pyrus_communis	pycom09g19410 pycom17g27720
rosa_chinensis	RchiOBHm_Chr3g0486891
rosa_laevigata	RLG00000023048
rosa_multiflora	Rmu_sc0003470.1_g000011
rosa_roxburghii	Rroxscaffold_6G00395420
rosa_rugosa	Rorug03G0228600 Rorug03G0228600 Rorug03G0228600
rosa_samantha	Rh3AG277800 Rh3BG313600 Rh3CG311900 Rh3DG308400
rosa_wichuraiana	Rw3G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	4 cut(s)	110, 113, 166, 551
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	398, 598
AcuI	CTGAAG	1 cut(s)	389
AfaI	GTAC	2 cut(s)	78, 196
AfeI	AGCGCT	1 cut(s)	579
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgsI	TTSAA	5 cut(s)	142, 321, 398, 584, 596
AjiI	CACGTC	1 cut(s)	611
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AluBI	AGCT	3 cut(s)	93, 171, 380
AluI	AGCT	3 cut(s)	93, 171, 380
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	139
Aor51HI	AGCGCT	1 cut(s)	579
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	424
ApoI	RAATTY	2 cut(s)	398, 598
Asp700I	GAANNNNTTC	3 cut(s)	94, 196, 468
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	2 cut(s)	47, 506
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	651
AvaII	GGWCC	1 cut(s)	506
BaeI	ACNNNNGTAYC	2 cut(s)	60, 93
BanII	GRGCYC	1 cut(s)	173
BbsI	GAAGAC	2 cut(s)	111, 345
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	2 cut(s)	232, 354
BceAI	ACGGC	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	581
BglII	AGATCT	1 cut(s)	455
BisI	GCNGC	2 cut(s)	113, 425
BlsI	GCNGC	2 cut(s)	114, 426
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	506
BmgBI	CACGTC	1 cut(s)	611
BmgT120I	GGNCC	2 cut(s)	47, 506
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	3 cut(s)	38, 297, 581
BpiI	GAAGAC	2 cut(s)	111, 345
BpmI	CTGGAG	2 cut(s)	472, 549
BpuMI	CCSGG	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse1I	ACTGG	4 cut(s)	187, 455, 566, 662
Bse3DI	GCAATG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMI	GCAATG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	115
BseNI	ACTGG	4 cut(s)	187, 455, 566, 662
BseXI	GCAGC	1 cut(s)	436
BsgI	GTGCAG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	45, 60
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	144, 283, 455
BspACI	CCGC	4 cut(s)	110, 113, 166, 551
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	114
BspPI	GGATC	1 cut(s)	139
BspQI	GCTCTTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	221
BsrI	ACTGG	4 cut(s)	187, 455, 566, 662
BssMI	GATC	3 cut(s)	144, 283, 455
Bst4CI	ACNGT	4 cut(s)	56, 232, 325, 535
Bst6I	CTCTTC	1 cut(s)	100
BstBAI	YACGTR	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	2 cut(s)	101, 520
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	312
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	3 cut(s)	147, 286, 458
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	3 cut(s)	144, 283, 455
BstMWI	GCNNNNNNNGC	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	436
BstV2I	GAAGAC	2 cut(s)	111, 345
BstX2I	RGATCY	2 cut(s)	144, 455
BstYI	RGATCY	2 cut(s)	144, 455
BsuRI	GGCC	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	611
BtsCI	GGATG	1 cut(s)	312
BtsIMutI	CAGTG	4 cut(s)	180, 365, 448, 573
Cac8I	GCNNGC	1 cut(s)	411
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	2 cut(s)	47, 506
Csp6I	GTAC	2 cut(s)	77, 195
CviAII	CATG	3 cut(s)	150, 405, 516
CviJI	RGCY	9 cut(s)	48, 93, 171, 346, 380, 409, 427, 469, 615
CviKI_1	RGCY	9 cut(s)	48, 93, 171, 346, 380, 409, 427, 469, 615
CviQI	GTAC	2 cut(s)	77, 195
DdeI	CTNAG	2 cut(s)	101, 520
DpnI	GATC	3 cut(s)	146, 285, 457
DpnII	GATC	3 cut(s)	144, 283, 455
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
EciI	GGCGGA	2 cut(s)	181, 540
Ecl136II	GAGCTC	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	506
Eco47III	AGCGCT	1 cut(s)	579
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	171
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRI	GAATTC	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	3 cut(s)	153, 408, 519
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	3 cut(s)	149, 404, 515
FauNDI	CATATG	2 cut(s)	268, 541
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	113, 425
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	113, 425
FspBI	CTAG	1 cut(s)	461
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	2 cut(s)	113, 425
GsuI	CTGGAG	2 cut(s)	472, 549
HaeII	RGCGCY	1 cut(s)	581
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	2 cut(s)	45, 60
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	3 cut(s)	153, 408, 519
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	3 cut(s)	186, 295, 656
HpaII	CCGG	2 cut(s)	45, 60
HphI	GGTGA	1 cut(s)	651
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	6 cut(s)	104, 191, 283, 417, 441, 501
Hpy188III	TCNNGA	5 cut(s)	142, 287, 357, 461, 593
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	148, 458, 519
HpyCH4III	ACNGT	4 cut(s)	56, 232, 325, 535
HpyCH4IV	ACGT	2 cut(s)	75, 610
HpyCH4V	TGCA	6 cut(s)	17, 214, 228, 266, 424, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	635
HpyF3I	CTNAG	2 cut(s)	101, 520
HpySE526I	ACGT	2 cut(s)	75, 610
Hsp92II	CATG	3 cut(s)	153, 408, 519
HspAI	GCGC	1 cut(s)	578
Kzo9I	GATC	3 cut(s)	144, 283, 455
LguI	GCTCTTC	1 cut(s)	100
LmnI	GCTCC	2 cut(s)	168, 176
LpnPI	CCDG	9 cut(s)	58, 73, 148, 168, 206, 356, 360, 436, 579
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	3 cut(s)	38, 297, 581
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	2 cut(s)	75, 610
MaeIII	GTNAC	2 cut(s)	275, 363
MalI	GATC	3 cut(s)	146, 285, 457
MboI	GATC	3 cut(s)	144, 283, 455
MboII	GAAGA	4 cut(s)	87, 111, 340, 350
MflI	RGATCY	2 cut(s)	144, 455
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	4 cut(s)	243, 398, 555, 598
MlyI	GAGTC	1 cut(s)	650
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	3 cut(s)	188, 283, 473
MroXI	GAANNNNTTC	3 cut(s)	94, 196, 468
MspI	CCGG	2 cut(s)	45, 60
MspR9I	CCNGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	635
NciI	CCSGG	1 cut(s)	60
NdeI	CATATG	2 cut(s)	268, 541
NdeII	GATC	3 cut(s)	144, 283, 455
NlaIII	CATG	3 cut(s)	153, 408, 519
NmeAIII	GCCGAG	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	100
PdmI	GAANNNNTTC	3 cut(s)	94, 196, 468
PfeI	GAWTC	2 cut(s)	186, 295
PkrI	GCNGC	2 cut(s)	114, 426
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
Ppu21I	YACGTR	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	506
PspPI	GGNCC	2 cut(s)	47, 506
PspPPI	RGGWCCY	1 cut(s)	506
PsuI	RGATCY	2 cut(s)	144, 455
RsaI	GTAC	2 cut(s)	78, 196
RsaNI	GTAC	2 cut(s)	77, 195
SacI	GAGCTC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	100
SatI	GCNGC	2 cut(s)	113, 425
Sau3AI	GATC	3 cut(s)	144, 283, 455
Sau96I	GGNCC	2 cut(s)	47, 506
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	1 cut(s)	650
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	3 cut(s)	38, 297, 581
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	506
Sse9I	AATT	4 cut(s)	243, 398, 555, 598
SsiI	CCGC	4 cut(s)	110, 113, 166, 551
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	1 cut(s)	461
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	4 cut(s)	56, 232, 325, 535
TaiI	ACGT	2 cut(s)	78, 613
TasI	AATT	4 cut(s)	243, 398, 555, 598
TatI	WGTACW	1 cut(s)	194
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	186, 295
TscAI	CASTG	4 cut(s)	187, 372, 455, 573
TseFI	GTSAC	1 cut(s)	363
TseI	GCWGC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	363
TspDTI	ATGAA	2 cut(s)	501, 558
TspGWI	ACGGA	2 cut(s)	163, 250
TspRI	CASTG	4 cut(s)	187, 372, 455, 573
VpaK11BI	GGWCC	1 cut(s)	506
XagI	CCTNNNNNAGG	1 cut(s)	477
XapI	RAATTY	2 cut(s)	398, 598
XbaI	TCTAGA	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	36
XmnI	GAANNNNTTC	3 cut(s)	94, 196, 468
XspI	CTAG	1 cut(s)	461
ZrmI	AGTACT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.