Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004371

Physical Location & Seq

Genomic Coordinates Reverse (-)

31882211 .. 31884845

Gene Structure 2635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG313600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCTGCTGCTTCTGCAACCGCTGTAGCAACCTACATTTCTAGACCAAACTGTACCAGTCTCAGCCACGTACCCGTTTTGAGAAGCTCTTCTTCTCTAAGACCACAGCCGTCTCTTACTCGCATCTTCTTCAAAATCCCATGTGGGTTTTCCAAGCGAAGCTCGGTCTTCACTGGATTCAGACCTCTTTCCCCTGTTATGGAATGGCAGGACTGCACAGTAAAGACGAAAATTGATGTGCCTATTTCAGTCGCATATGATTGTTACTCTGATCGTGAGGCCATTCCCCAGTGGATGCCCTTTATTTCTACTGTAAAGGTATTGGAAGACAAGCCTGACCTATCACGATGGTCACTTAAGTATAGAGCTTTTGGGCGTGATATTGAATTCTCATGGCTTGCTCGAAATATGCAGCCCACCCGAAATCAGAAAATCCACTGGAGATCTCTGGAAGGTCTTCCTAACAGAGGCGCTGTTCGTTTTTATCCAAAAGGTCCTTCGTCATGCATAGTAGAATTAACAGTCTCTTACGAAGTTCCTGGAATTTTGGCTCCAGTGGCGTCAGCACTGCAACCTTTTACTGAAAGTTTACTTGGACGTGGCTTGGAAAGGTTTGCAACATTTGCAAAAAGCTACAAATCGGACTCAACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

218

Amino Acids

24.47

Weight (kDa)

9.68

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	73 - 207	7.4e-09	Polyketide cyclase / dehydrase and lipid transport
Polyketide_cyc	PF03364	78 - 205	1.8e-14	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02475 AT4G01883 AT4G01883 AT4G01883
fragaria_vesca	FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710
malus_domestica	MD09G1287000.v1.1 MD17G1279300.v1.1
prunus_persica	Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1
pyrus_communis	pycom09g19410 pycom17g27720
rosa_chinensis	RchiOBHm_Chr3g0486891
rosa_laevigata	RLG00000023048
rosa_multiflora	Rmu_sc0003470.1_g000011
rosa_roxburghii	Rroxscaffold_6G00395420
rosa_rugosa	Rorug03G0228600 Rorug03G0228600 Rorug03G0228600
rosa_samantha	Rh3AG277800 Rh3BG313600 Rh3CG311900 Rh3DG308400
rosa_wichuraiana	Rw3G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	386, 543
AcyI	GRCGYC	1 cut(s)	560
AfaI	GTAC	2 cut(s)	55, 72
AfiI	CCNNNNNNNGG	2 cut(s)	199, 467
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	133, 386
AjiI	CACGTC	1 cut(s)	599
AjnI	CCWGG	1 cut(s)	538
AjuI	GAANNNNNNNTTGG	4 cut(s)	481, 513, 576, 608
AluBI	AGCT	4 cut(s)	87, 162, 368, 633
AluI	AGCT	4 cut(s)	87, 162, 368, 633
Alw26I	GTCTC	3 cut(s)	65, 117, 529
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	8, 412
ApoI	RAATTY	2 cut(s)	386, 543
Asp700I	GAANNNNTTC	2 cut(s)	88, 456
AspLEI	GCGC	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	494
BbsI	GAAGAC	3 cut(s)	160, 333, 449
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	1 cut(s)	342
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	540
BcoDI	GTCTC	3 cut(s)	65, 117, 529
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	474
BfrI	CTTAAG	1 cut(s)	356
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	2 cut(s)	9, 413
BlsI	GCNGC	2 cut(s)	10, 414
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	1 cut(s)	494
BmgBI	CACGTC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	1 cut(s)	540
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	2 cut(s)	132, 285
BmuI	ACTGGG	1 cut(s)	283
BpiI	GAAGAC	3 cut(s)	160, 333, 449
BpmI	CTGGAG	2 cut(s)	460, 537
BsaAI	YACGTR	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 467
Bse1I	ACTGG	5 cut(s)	57, 178, 289, 443, 554
BseBI	CCWGG	1 cut(s)	540
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	199, 467
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	5 cut(s)	57, 178, 289, 443, 554
BseXI	GCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	199, 467
BsmAI	GTCTC	3 cut(s)	65, 117, 529
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	271, 443
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	552
BspQI	GCTCTTC	1 cut(s)	94
BspTI	CTTAAG	1 cut(s)	356
BsrI	ACTGG	5 cut(s)	57, 178, 289, 443, 554
BssMI	GATC	2 cut(s)	271, 443
BssNI	GRCGYC	1 cut(s)	560
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	5 cut(s)	53, 220, 313, 523, 652
Bst6I	CTCTTC	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	560
BstAFI	CTTAAG	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	2 cut(s)	62, 98
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	2 cut(s)	274, 446
BstMAI	GTCTC	3 cut(s)	65, 117, 529
BstMBI	GATC	2 cut(s)	271, 443
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 557, 623
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	3 cut(s)	160, 333, 449
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	281
BtrI	CACGTC	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	5 cut(s)	171, 296, 436, 561, 566
Cac8I	GCNNGC	1 cut(s)	399
CfoI	GCGC	1 cut(s)	473
Cfr13I	GGNCC	1 cut(s)	494
CseI	GACGC	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	54, 71
CviAII	CATG	3 cut(s)	141, 393, 504
CviQI	GTAC	2 cut(s)	54, 71
DdeI	CTNAG	2 cut(s)	62, 98
DpnI	GATC	2 cut(s)	273, 445
DpnII	GATC	2 cut(s)	271, 443
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	494
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	538
EcoT22I	ATGCAT	1 cut(s)	509
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	3 cut(s)	144, 396, 507
FaiI	YATR	9 cut(s)	142, 200, 256, 258, 363, 394, 410, 505, 509
FalI	AAGNNNNNCTT	2 cut(s)	76, 108
FatI	CATG	3 cut(s)	140, 392, 503
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	9, 413
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	9, 413
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	2 cut(s)	9, 413
GsuI	CTGGAG	2 cut(s)	460, 537
HaeII	RGCGCY	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	281
HgaI	GACGC	1 cut(s)	549
HhaI	GCGC	1 cut(s)	473
Hin1I	GRCGYC	1 cut(s)	560
Hin1II	CATG	3 cut(s)	144, 396, 507
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HinfI	GANTC	2 cut(s)	177, 644
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	4 cut(s)	182, 271, 429, 643
Hpy188III	TCNNGA	4 cut(s)	42, 275, 345, 449
Hpy8I	GTNNAC	1 cut(s)	590
HpyAV	CCTTC	2 cut(s)	446, 507
HpyCH4III	ACNGT	5 cut(s)	53, 220, 313, 523, 652
HpyCH4IV	ACGT	2 cut(s)	69, 598
HpyCH4V	TGCA	7 cut(s)	17, 216, 412, 507, 571, 617, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 557, 623
HpyF3I	CTNAG	2 cut(s)	62, 98
HpySE526I	ACGT	2 cut(s)	69, 598
Hsp92I	GRCGYC	1 cut(s)	560
Hsp92II	CATG	3 cut(s)	144, 396, 507
HspAI	GCGC	1 cut(s)	471
Kzo9I	GATC	2 cut(s)	271, 443
LguI	GCTCTTC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	2 cut(s)	132, 285
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	2 cut(s)	69, 598
MaeIII	GTNAC	2 cut(s)	263, 351
MalI	GATC	2 cut(s)	273, 445
MboI	GATC	2 cut(s)	271, 443
MboII	GAAGA	7 cut(s)	81, 84, 118, 121, 160, 338, 449
MflI	RGATCY	1 cut(s)	443
MluCI	AATT	4 cut(s)	231, 386, 515, 543
MlyI	GAGTC	1 cut(s)	638
MnlI	CCTC	3 cut(s)	195, 271, 461
Mph1103I	ATGCAT	1 cut(s)	509
MroXI	GAANNNNTTC	2 cut(s)	88, 456
MseI	TTAA	3 cut(s)	357, 518, 655
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	3 cut(s)	14, 557, 623
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	2 cut(s)	271, 443
NlaIII	CATG	3 cut(s)	144, 396, 507
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	1 cut(s)	351
NsiI	ATGCAT	1 cut(s)	509
PciSI	GCTCTTC	1 cut(s)	94
PdmI	GAANNNNTTC	2 cut(s)	88, 456
PfeI	GAWTC	1 cut(s)	177
PfoI	TCCNGGA	1 cut(s)	538
PkrI	GCNGC	2 cut(s)	10, 414
PleI	GAGTC	1 cut(s)	638
PpsI	GAGTC	1 cut(s)	638
Ppu21I	YACGTR	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	494
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	1 cut(s)	494
PspPPI	RGGWCCY	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	443
RsaI	GTAC	2 cut(s)	55, 72
RsaNI	GTAC	2 cut(s)	54, 71
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	3 cut(s)	357, 518, 655
SatI	GCNGC	2 cut(s)	9, 413
Sau3AI	GATC	2 cut(s)	271, 443
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	1 cut(s)	540
SfaNI	GCATC	2 cut(s)	132, 285
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	4 cut(s)	231, 386, 515, 543
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	538
TaaI	ACNGT	5 cut(s)	53, 220, 313, 523, 652
TaiI	ACGT	2 cut(s)	72, 601
TaqI	TCGA	1 cut(s)	403
TaqII	GACCGA	1 cut(s)	154
TasI	AATT	4 cut(s)	231, 386, 515, 543
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	3 cut(s)	357, 518, 655
Tru9I	TTAA	3 cut(s)	357, 518, 655
TscAI	CASTG	5 cut(s)	178, 296, 443, 561, 573
TseFI	GTSAC	1 cut(s)	351
TseI	GCWGC	2 cut(s)	8, 412
Tsp45I	GTSAC	1 cut(s)	351
TspRI	CASTG	5 cut(s)	178, 296, 443, 561, 573
Vha464I	CTTAAG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	494
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	2 cut(s)	386, 543
XbaI	TCTAGA	1 cut(s)	41
XmnI	GAANNNNTTC	2 cut(s)	88, 456
XspI	CTAG	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.