AT4G01883

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004371
Physical Location & Seq
Forward (+)
813048 .. 815170
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01883.3

Sequence Viewer

Length: 675 bp
ATGTCTGCAACGGCAATTCTCTCTGTAAATAACCCTAAAGACTTAGTCACCGGATTTGGTAATCGGACATTTCATTCCCGGAGCAACTTTGCTAAACCCAGTTCGAGATTGTTTCCTTCTTCTTCTTCTCCGATGAAGCCTTTGACCCTTGCTTCTAGATTCTCTCCTTTGATTTCAACAAATAGATCCTTTAAATCTTCAGTCTTCAGGAGATTTGATACTCTCATGGAGTGGCAAGAATGCAAAGTAAAGATGAAGGTAGAAGTGCCTGTATCAGTTGCTTATGGACTCTACTCGGAACGAGAATCAATTCCTAAATGGATGACATTTATTTCATCCGTTAAGGTATTGAAGGACAAACCCGATTTATCTCGATGGACCTTGAAATATAAAGCATTTGGTCAGAATCTTGAGTACGCTTGGCTTGCTAAGAACTTGCAGCCTCTCCCAAACCAAAAAATACACTGGATTTCTCTTGAAGGGCTTCCTAACAAGGGCACTGTCCGGTTTTTCCCGCTAGGACCTTCATCATGTGACGTAGAACTAACCTTTGCATATGAAGTTCCACTGCTACTTATACCATTTGCAGCAGCGCTTCAACCGCTAATGCAAGGATTGATCAAGAACAGTTTGGAGCAATTTGCAGAGATAGCAAAAAGCACAAAGACCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

224

Amino Acids

25.29

Weight (kDa)

9.87

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 87 - 186 3.7e-10 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 515, 602
AclWI GGATC 1 cut(s) 180
AcuI CTGAAG 2 cut(s) 183, 190
AfaI GTAC 1 cut(s) 416
AfeI AGCGCT 1 cut(s) 594
AfiI CCNNNNNNNGG 1 cut(s) 494
AgsI TTSAA 5 cut(s) 177, 352, 385, 479, 599
AlwI GGATC 1 cut(s) 180
Aor51HI AGCGCT 1 cut(s) 594
ApeKI GCWGC 3 cut(s) 439, 587, 590
Asp700I GAANNNNTTC 2 cut(s) 309, 483
AspLEI GCGC 1 cut(s) 595
AspS9I GGNCC 2 cut(s) 378, 521
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 2 cut(s) 378, 521
BaeGI GKGCMC 1 cut(s) 500
BbsI GAAGAC 1 cut(s) 196
BbvI GCAGC 3 cut(s) 451, 599, 602
BccI CCATC 1 cut(s) 369
BceAI ACGGC 1 cut(s) 27
BclI TGATCA 1 cut(s) 618
BcnI CCSGG 1 cut(s) 79
BfaI CTAG 2 cut(s) 156, 518
BfoI RGCGCY 1 cut(s) 596
BisI GCNGC 3 cut(s) 440, 588, 591
BlsI GCNGC 3 cut(s) 441, 589, 592
Bme1390I CCNGG 1 cut(s) 79
Bme18I GGWCC 2 cut(s) 378, 521
BmgT120I GGNCC 2 cut(s) 378, 521
BmrFI CCNGG 1 cut(s) 79
BmrI ACTGGG 1 cut(s) 93
BmuI ACTGGG 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 79
BsaWI WCCGGW 2 cut(s) 50, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse1I ACTGG 2 cut(s) 99, 470
BseGI GGATG 2 cut(s) 327, 335
BseLI CCNNNNNNNGG 1 cut(s) 494
BseNI ACTGG 2 cut(s) 99, 470
BseSI GKGCMC 1 cut(s) 500
BseXI GCAGC 3 cut(s) 451, 599, 602
BsiSI CCGG 3 cut(s) 51, 79, 505
BslI CCNNNNNNNGG 1 cut(s) 494
BsmI GAATGC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 500
Bsp143I GATC 2 cut(s) 185, 618
BspACI CCGC 2 cut(s) 515, 602
BspPI GGATC 1 cut(s) 180
BsrI ACTGG 2 cut(s) 99, 470
BssMI GATC 2 cut(s) 185, 618
Bst4CI ACNGT 2 cut(s) 502, 629
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 3 cut(s) 43, 429, 672
BstF5I GGATG 2 cut(s) 327, 335
BstH2I RGCGCY 1 cut(s) 596
BstHHI GCGC 1 cut(s) 595
BstKTI GATC 2 cut(s) 188, 621
BstMBI GATC 2 cut(s) 185, 618
BstMWI GCNNNNNNNGC 3 cut(s) 425, 601, 650
BstSCI CCNGG 1 cut(s) 77
BstSLI GKGCMC 1 cut(s) 500
BstV1I GCAGC 3 cut(s) 451, 599, 602
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BtsCI GGATG 2 cut(s) 327, 335
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 3 cut(s) 463, 498, 566
Cac8I GCNNGC 1 cut(s) 426
CfoI GCGC 1 cut(s) 595
Cfr13I GGNCC 2 cut(s) 378, 521
Csp6I GTAC 1 cut(s) 415
CviAII CATG 2 cut(s) 226, 531
CviJI RGCY 4 cut(s) 139, 424, 442, 484
CviKI_1 RGCY 4 cut(s) 139, 424, 442, 484
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 3 cut(s) 43, 429, 672
DpnI GATC 2 cut(s) 187, 620
DpnII GATC 2 cut(s) 185, 618
DraI TTTAAA 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 378, 521
Eco47III AGCGCT 1 cut(s) 594
Eco57I CTGAAG 2 cut(s) 183, 190
EcoO109I RGGNCCY 1 cut(s) 521
FaeI CATG 2 cut(s) 229, 534
FaiI YATR 7 cut(s) 227, 285, 390, 532, 556, 558, 578
FatI CATG 2 cut(s) 225, 530
FauI CCCGC 1 cut(s) 522
FauNDI CATATG 1 cut(s) 556
FbaI TGATCA 1 cut(s) 618
Fnu4HI GCNGC 3 cut(s) 440, 588, 591
FokI GGATG 2 cut(s) 322, 334
Fsp4HI GCNGC 3 cut(s) 440, 588, 591
FspBI CTAG 2 cut(s) 156, 518
GlaI GCGC 1 cut(s) 594
GluI GCNGC 3 cut(s) 440, 588, 591
HaeII RGCGCY 1 cut(s) 596
HapII CCGG 3 cut(s) 51, 79, 505
HhaI GCGC 1 cut(s) 595
Hin1II CATG 2 cut(s) 229, 534
Hin6I GCGC 1 cut(s) 593
HinP1I GCGC 1 cut(s) 593
HinfI GANTC 4 cut(s) 159, 288, 305, 406
HpaII CCGG 3 cut(s) 51, 79, 505
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 4 cut(s) 66, 132, 298, 405
Hpy188III TCNNGA 7 cut(s) 105, 156, 208, 372, 410, 476, 622
HpyAV CCTTC 5 cut(s) 126, 250, 346, 473, 534
HpyCH4III ACNGT 2 cut(s) 502, 629
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 7 cut(s) 8, 243, 439, 554, 587, 610, 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 425, 601, 650
HpyF3I CTNAG 3 cut(s) 43, 429, 672
HpySE526I ACGT 1 cut(s) 537
Hsp92II CATG 2 cut(s) 229, 534
HspAI GCGC 1 cut(s) 593
Ksp22I TGATCA 1 cut(s) 618
Kzo9I GATC 2 cut(s) 185, 618
LmnI GCTCC 2 cut(s) 81, 634
LpnPI CCDG 7 cut(s) 64, 92, 112, 193, 282, 451, 518
Lsp1109I GCAGC 3 cut(s) 451, 599, 602
MaeI CTAG 2 cut(s) 156, 518
MaeII ACGT 1 cut(s) 537
MaeIII GTNAC 2 cut(s) 46, 533
MalI GATC 2 cut(s) 187, 620
MboI GATC 2 cut(s) 185, 618
MboII GAAGA 5 cut(s) 111, 114, 117, 189, 196
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 500
MluCI AATT 3 cut(s) 15, 309, 638
MlyI GAGTC 1 cut(s) 282
MnlI CCTC 1 cut(s) 453
MroXI GAANNNNTTC 2 cut(s) 309, 483
MseI TTAA 2 cut(s) 192, 342
MspI CCGG 3 cut(s) 51, 79, 505
MspR9I CCNGG 1 cut(s) 79
Mva1269I GAATGC 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 425, 601, 650
NciI CCSGG 1 cut(s) 79
NdeI CATATG 1 cut(s) 556
NdeII GATC 2 cut(s) 185, 618
NlaIII CATG 2 cut(s) 229, 534
NmuCI GTSAC 2 cut(s) 46, 533
PctI GAATGC 1 cut(s) 245
PdmI GAANNNNTTC 2 cut(s) 309, 483
PfeI GAWTC 3 cut(s) 159, 305, 406
PflFI GACNNNGTC 1 cut(s) 44
PfoI TCCNGGA 1 cut(s) 77
PkrI GCNGC 3 cut(s) 441, 589, 592
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PpuMI RGGWCCY 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 521
PspPI GGNCC 2 cut(s) 378, 521
PspPPI RGGWCCY 1 cut(s) 521
PsuI RGATCY 1 cut(s) 185
PsyI GACNNNGTC 1 cut(s) 44
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SaqAI TTAA 2 cut(s) 192, 342
SatI GCNGC 3 cut(s) 440, 588, 591
Sau3AI GATC 2 cut(s) 185, 618
Sau96I GGNCC 2 cut(s) 378, 521
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 1 cut(s) 79
SduI GDGCHC 1 cut(s) 500
SetI ASST 6 cut(s) 261, 348, 383, 526, 540, 551
SinI GGWCC 2 cut(s) 378, 521
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 3 cut(s) 15, 309, 638
SsiI CCGC 2 cut(s) 515, 602
SspMI CTAG 2 cut(s) 156, 518
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 2 cut(s) 502, 629
TaiI ACGT 1 cut(s) 540
TaqI TCGA 2 cut(s) 104, 373
TasI AATT 3 cut(s) 15, 309, 638
TfiI GAWTC 3 cut(s) 159, 305, 406
Tru1I TTAA 2 cut(s) 192, 342
Tru9I TTAA 2 cut(s) 192, 342
TscAI CASTG 3 cut(s) 470, 505, 573
TseFI GTSAC 2 cut(s) 46, 533
TseI GCWGC 3 cut(s) 439, 587, 590
Tsp45I GTSAC 2 cut(s) 46, 533
TspDTI ATGAA 6 cut(s) 62, 149, 269, 324, 516, 573
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 3 cut(s) 470, 505, 573
Tth111I GACNNNGTC 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 378, 521
XbaI TCTAGA 1 cut(s) 155
XmnI GAANNNNTTC 2 cut(s) 309, 483
XspI CTAG 2 cut(s) 156, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.