Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004371

Physical Location & Seq

Genomic Coordinates Forward (+)

17278186 .. 17280972

Gene Structure 2787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023048

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCTGCTGCTTCTGCAACCGTTGTAGCAGCCTACATTTCTAGACCAAACTGTACCAGTCTCAGCCACGTACCCGTTTTGAGAAGCTCTTCTTCTCTAAGACCACAGCCGTCTCTTAATCGCATCTTCTTCAAAAAAATCCCATGTGGGTTTTCCAAGCGAAGCTCGGTCTTCACTGGATTCAGACCTCTTTCCCCTGTTATGGAATGGCAGGACTGCACAGTAAAGACGAAAATTGATGTGCCTATTTCAGTCGCATATGATTGTTACTCTGATCGTGAGGCCATTCCCCAGTGGATGCCCTTTATTTCTACTGTAAAGGTATTGGAAGACAAACCTGACCTATCACGATGGTCGCTTAAGTATAGAGCTTTTGGGCGTGATATTGAATTCTCATGGATTGCTCGAAATATGCAGCCCACCCGAAATCAGAAAATCCACTGGAGATCTCTGGAAGGTCTTCCTAACAGAGGCGCTGTTCGTTTTTATCCAAAAGGTCCTTCGTCATGCATAGTAGAATTAACAGTCTCTTATGAAGTTCCTGCAATTTTGGCTCCAGTGGCAGCAGCACTGCAACCTTTTACTGAAAGTTTACTTGGACGTGGCTTGGAAAGGTTTGCAACATTTGCAAAAAGCTACAAATCGGACTCAACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

220

Amino Acids

24.6

Weight (kDa)

9.73

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	74 - 208	2e-09	Polyketide cyclase / dehydrase and lipid transport
Polyketide_cyc	PF03364	79 - 206	4.9e-15	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02475 AT4G01883 AT4G01883 AT4G01883
fragaria_vesca	FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710
malus_domestica	MD09G1287000.v1.1 MD17G1279300.v1.1
prunus_persica	Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1
pyrus_communis	pycom09g19410 pycom17g27720
rosa_chinensis	RchiOBHm_Chr3g0486891
rosa_laevigata	RLG00000023048
rosa_multiflora	Rmu_sc0003470.1_g000011
rosa_roxburghii	Rroxscaffold_6G00395420
rosa_rugosa	Rorug03G0228600 Rorug03G0228600 Rorug03G0228600
rosa_samantha	Rh3AG277800 Rh3BG313600 Rh3CG311900 Rh3DG308400
rosa_wichuraiana	Rw3G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	389
AfaI	GTAC	2 cut(s)	55, 72
AfiI	CCNNNNNNNGG	2 cut(s)	202, 470
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	133, 389
AjiI	CACGTC	1 cut(s)	602
AjuI	GAANNNNNNNTTGG	4 cut(s)	484, 516, 579, 611
AluBI	AGCT	4 cut(s)	87, 165, 371, 636
AluI	AGCT	4 cut(s)	87, 165, 371, 636
Alw26I	GTCTC	3 cut(s)	65, 117, 532
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	5 cut(s)	8, 29, 415, 563, 566
ApoI	RAATTY	1 cut(s)	389
Asp700I	GAANNNNTTC	2 cut(s)	88, 459
AspLEI	GCGC	1 cut(s)	476
AspS9I	GGNCC	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	497
BbsI	GAAGAC	3 cut(s)	163, 336, 452
BbvI	GCAGC	4 cut(s)	41, 427, 575, 578
BccI	CCATC	1 cut(s)	345
BceAI	ACGGC	1 cut(s)	94
BcoDI	GTCTC	3 cut(s)	65, 117, 532
BfaI	CTAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	477
BfrI	CTTAAG	1 cut(s)	359
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	5 cut(s)	9, 30, 416, 564, 567
BlsI	GCNGC	5 cut(s)	10, 31, 417, 565, 568
Bme18I	GGWCC	1 cut(s)	497
BmgBI	CACGTC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	555
BmrI	ACTGGG	1 cut(s)	286
BmsI	GCATC	2 cut(s)	132, 288
BmuI	ACTGGG	1 cut(s)	286
BpiI	GAAGAC	3 cut(s)	163, 336, 452
BpmI	CTGGAG	2 cut(s)	463, 540
BsaAI	YACGTR	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 470
Bse1I	ACTGG	5 cut(s)	57, 181, 292, 446, 557
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	202, 470
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	5 cut(s)	57, 181, 292, 446, 557
BseXI	GCAGC	4 cut(s)	41, 427, 575, 578
BsgI	GTGCAG	1 cut(s)	202
BshFI	GGCC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	202, 470
BsmAI	GTCTC	3 cut(s)	65, 117, 532
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	274, 446
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	555
BspQI	GCTCTTC	1 cut(s)	94
BspTI	CTTAAG	1 cut(s)	359
BsrI	ACTGG	5 cut(s)	57, 181, 292, 446, 557
BssMI	GATC	2 cut(s)	274, 446
Bst4CI	ACNGT	6 cut(s)	22, 53, 223, 316, 526, 655
Bst6I	CTCTTC	1 cut(s)	94
BstAFI	CTTAAG	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstBAI	YACGTR	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	62, 98
BstENI	CCTNNNNNAGG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	2 cut(s)	277, 449
BstMAI	GTCTC	3 cut(s)	65, 117, 532
BstMBI	GATC	2 cut(s)	274, 446
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 551, 560, 626
BstV1I	GCAGC	4 cut(s)	41, 427, 575, 578
BstV2I	GAAGAC	3 cut(s)	163, 336, 452
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BsuRI	GGCC	1 cut(s)	284
BtrI	CACGTC	1 cut(s)	602
BtsCI	GGATG	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	569
BtsIMutI	CAGTG	5 cut(s)	174, 299, 439, 564, 569
CfoI	GCGC	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	497
Csp6I	GTAC	2 cut(s)	54, 71
CviAII	CATG	3 cut(s)	144, 396, 507
CviQI	GTAC	2 cut(s)	54, 71
DdeI	CTNAG	2 cut(s)	62, 98
DpnI	GATC	2 cut(s)	276, 448
DpnII	GATC	2 cut(s)	274, 446
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	497
EcoNI	CCTNNNNNAGG	1 cut(s)	468
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	389
EcoT22I	ATGCAT	1 cut(s)	512
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	3 cut(s)	147, 399, 510
FalI	AAGNNNNNCTT	2 cut(s)	76, 108
FatI	CATG	3 cut(s)	143, 395, 506
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	5 cut(s)	9, 30, 416, 564, 567
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	5 cut(s)	9, 30, 416, 564, 567
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	5 cut(s)	9, 30, 416, 564, 567
GsuI	CTGGAG	2 cut(s)	463, 540
HaeII	RGCGCY	1 cut(s)	477
HaeIII	GGCC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	3 cut(s)	147, 399, 510
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HinfI	GANTC	2 cut(s)	180, 647
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	4 cut(s)	185, 274, 432, 646
Hpy188III	TCNNGA	4 cut(s)	42, 278, 348, 452
Hpy8I	GTNNAC	1 cut(s)	593
HpyAV	CCTTC	2 cut(s)	449, 510
HpyCH4III	ACNGT	6 cut(s)	22, 53, 223, 316, 526, 655
HpyCH4IV	ACGT	2 cut(s)	69, 601
HpyCH4V	TGCA	8 cut(s)	17, 219, 415, 510, 545, 574, 620, 629
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 551, 560, 626
HpyF3I	CTNAG	2 cut(s)	62, 98
HpySE526I	ACGT	2 cut(s)	69, 601
Hsp92II	CATG	3 cut(s)	147, 399, 510
HspAI	GCGC	1 cut(s)	474
Kzo9I	GATC	2 cut(s)	274, 446
LguI	GCTCTTC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	4 cut(s)	41, 427, 575, 578
LweI	GCATC	2 cut(s)	132, 288
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	2 cut(s)	69, 601
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	2 cut(s)	276, 448
MboI	GATC	2 cut(s)	274, 446
MboII	GAAGA	7 cut(s)	81, 84, 118, 121, 163, 341, 452
MflI	RGATCY	1 cut(s)	446
MluCI	AATT	4 cut(s)	234, 389, 518, 546
MlyI	GAGTC	1 cut(s)	641
MnlI	CCTC	3 cut(s)	198, 274, 464
Mph1103I	ATGCAT	1 cut(s)	512
MroXI	GAANNNNTTC	2 cut(s)	88, 459
MseI	TTAA	4 cut(s)	117, 360, 521, 658
MspCI	CTTAAG	1 cut(s)	359
MwoI	GCNNNNNNNGC	4 cut(s)	14, 551, 560, 626
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	2 cut(s)	274, 446
NlaIII	CATG	3 cut(s)	147, 399, 510
NlaIV	GGNNCC	1 cut(s)	555
NsiI	ATGCAT	1 cut(s)	512
PciSI	GCTCTTC	1 cut(s)	94
PdmI	GAANNNNTTC	2 cut(s)	88, 459
PfeI	GAWTC	1 cut(s)	180
PkrI	GCNGC	5 cut(s)	10, 31, 417, 565, 568
PleI	GAGTC	1 cut(s)	641
PpsI	GAGTC	1 cut(s)	641
Ppu21I	YACGTR	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	497
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	1 cut(s)	497
PspPPI	RGGWCCY	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	446
RsaI	GTAC	2 cut(s)	55, 72
RsaNI	GTAC	2 cut(s)	54, 71
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	4 cut(s)	117, 360, 521, 658
SatI	GCNGC	5 cut(s)	9, 30, 416, 564, 567
Sau3AI	GATC	2 cut(s)	274, 446
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	1 cut(s)	641
SfaNI	GCATC	2 cut(s)	132, 288
SinI	GGWCC	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	4 cut(s)	234, 389, 518, 546
SspMI	CTAG	1 cut(s)	42
TaaI	ACNGT	6 cut(s)	22, 53, 223, 316, 526, 655
TaiI	ACGT	2 cut(s)	72, 604
TaqI	TCGA	1 cut(s)	406
TaqII	GACCGA	1 cut(s)	157
TasI	AATT	4 cut(s)	234, 389, 518, 546
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	4 cut(s)	117, 360, 521, 658
Tru9I	TTAA	4 cut(s)	117, 360, 521, 658
TscAI	CASTG	5 cut(s)	181, 299, 446, 564, 576
TseI	GCWGC	5 cut(s)	8, 29, 415, 563, 566
TspDTI	ATGAA	1 cut(s)	549
TspRI	CASTG	5 cut(s)	181, 299, 446, 564, 576
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	497
XagI	CCTNNNNNAGG	1 cut(s)	468
XapI	RAATTY	1 cut(s)	389
XbaI	TCTAGA	1 cut(s)	41
XmnI	GAANNNNTTC	2 cut(s)	88, 459
XspI	CTAG	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.