Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004371

Physical Location & Seq

Genomic Coordinates Forward (+)

25838386 .. 25841396

Gene Structure 3011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g27720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTTGTCGGGTCGCAGTAAAGTTTGTCGACCCAATCCCGTGGCAACAACAAACCGAGAGAAGAGAGGTGGGCAGCTCGGACAGGTGAGGTGGCTCCATCATCGTGATTTTGTGGTCTTCAGTCTTCTGATTTGTTTGACCATGTCTTGTACTTCTGCAACTGCTGTAGCATCAGCCTACATTTCCAGGCCCAACTGGCCCGGCAGTCTCACCGGCATACCCATCTGGAGAAGCCCTTCTCTCAGACCGCCGCCGCCATCTTCTCTCTGTGACTTCTCCTTCAAGATCCCATGTGGGTCTTTCAGGCGGAGCTCCGTCCTCACCGGATTCAGAAGTACGTCCCCCGTCGTTATGCAATGGCAGGACTGCACAGTAAAGATGGAAATTGATGTGCCTATTTCAGTTGCCTATGATTGTTACTCTGACCGTGAGGCGATTCCCCGTTGGATGCCATTTATTTCAACCGTGAAGATATTGGAAGACAAACCTGACTTATCGCGATGGTCACTGAAGTATAAAGCTTTTGGTCGTGATATTGAATTATCATGGCTTGCTCGGAATATGCAGCCTACACCAAATCAGAAAATCCACTGGAGATCTTTGGAAGGTCTTCCTAACAGAGGTGCTGTTCGGTTCTATCCAAAAGGTCCTTCATCATGCTTAGTAGAACTAACGGTGTCATATGAAGTTCCGCCGATTCTGTCTCCAGTAGCATCAGCGCTTCAACCATTTCTCGAAAATTTACTTGGGCGTGGCTTGGAAAGGTTTGCAATGTTTGCAAGAACCTACAAAGCAGACTCACCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

270

Amino Acids

30.3

Weight (kDa)

9.72

Isoelectric Point (pI)

67.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	124 - 257	2.1e-08	Polyketide cyclase / dehydrase and lipid transport
Polyketide_cyc	PF03364	129 - 256	1.6e-14	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02475 AT4G01883 AT4G01883 AT4G01883
fragaria_vesca	FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710
malus_domestica	MD09G1287000.v1.1 MD17G1279300.v1.1
prunus_persica	Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1
pyrus_communis	pycom09g19410 pycom17g27720
rosa_chinensis	RchiOBHm_Chr3g0486891
rosa_laevigata	RLG00000023048
rosa_multiflora	Rmu_sc0003470.1_g000011
rosa_roxburghii	Rroxscaffold_6G00395420
rosa_rugosa	Rorug03G0228600 Rorug03G0228600 Rorug03G0228600
rosa_samantha	Rh3AG277800 Rh3BG313600 Rh3CG311900 Rh3DG308400
rosa_wichuraiana	Rw3G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	28
AccII	CGCG	1 cut(s)	499
AciI	CCGC	5 cut(s)	248, 251, 254, 307, 692
AclWI	GGATC	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	739
AcuI	CTGAAG	2 cut(s)	103, 530
AfaI	GTAC	2 cut(s)	151, 337
AfeI	AGCGCT	1 cut(s)	720
AfiI	CCNNNNNNNGG	1 cut(s)	620
AgsI	TTSAA	4 cut(s)	283, 462, 539, 725
AjnI	CCWGG	1 cut(s)	185
AjuI	GAANNNNNNNTTGG	4 cut(s)	634, 666, 729, 761
AluBI	AGCT	3 cut(s)	76, 312, 521
AluI	AGCT	3 cut(s)	76, 312, 521
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	2 cut(s)	212, 708
AlwI	GGATC	1 cut(s)	280
Aor51HI	AGCGCT	1 cut(s)	720
AoxI	GGCC	2 cut(s)	188, 197
ApeKI	GCWGC	2 cut(s)	73, 565
ApoI	RAATTY	1 cut(s)	739
Asp700I	GAANNNNTTC	2 cut(s)	235, 609
AspLEI	GCGC	1 cut(s)	721
AspS9I	GGNCC	3 cut(s)	189, 198, 647
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	4 cut(s)	97, 202, 313, 792
AvaII	GGWCC	1 cut(s)	647
BanII	GRGCYC	1 cut(s)	314
BbsI	GAAGAC	4 cut(s)	109, 116, 486, 602
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	85, 577
BccI	CCATC	5 cut(s)	105, 230, 265, 373, 495
BciT130I	CCWGG	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	212, 708
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	722
BglI	GCCNNNNNGGC	1 cut(s)	196
BglII	AGATCT	1 cut(s)	596
BisI	GCNGC	4 cut(s)	74, 251, 254, 566
BlsI	GCNGC	4 cut(s)	75, 252, 255, 567
Bme1390I	CCNGG	2 cut(s)	187, 201
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	3 cut(s)	189, 198, 647
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	2 cut(s)	187, 201
BmsI	GCATC	3 cut(s)	179, 438, 722
BpiI	GAAGAC	4 cut(s)	109, 116, 486, 602
BpmI	CTGGAG	3 cut(s)	247, 613, 690
BpuMI	CCSGG	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	4 cut(s)	200, 596, 707, 803
Bse3DI	GCAATG	2 cut(s)	362, 777
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMI	GCAATG	2 cut(s)	362, 777
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	4 cut(s)	200, 596, 707, 803
BseXI	GCAGC	2 cut(s)	85, 577
BsgI	GTGCAG	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	499
BshFI	GGCC	2 cut(s)	190, 199
BsiHKAI	GWGCWC	1 cut(s)	314
BsiSI	CCGG	3 cut(s)	201, 213, 324
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	2 cut(s)	212, 708
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	190, 199
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	2 cut(s)	285, 596
Bsp68I	TCGCGA	1 cut(s)	499
BspACI	CCGC	5 cut(s)	248, 251, 254, 307, 692
BspANI	GGCC	2 cut(s)	190, 199
BspCNI	CTCAG	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	95
BspPI	GGATC	1 cut(s)	280
BsrDI	GCAATG	2 cut(s)	362, 777
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	4 cut(s)	200, 596, 707, 803
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	285, 596
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	4 cut(s)	373, 428, 466, 676
Bst6I	CTCTTC	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	2 cut(s)	242, 661
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	618
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	1 cut(s)	499
BstH2I	RGCGCY	1 cut(s)	722
BstHHI	GCGC	1 cut(s)	721
BstKTI	GATC	2 cut(s)	288, 599
BstMAI	GTCTC	2 cut(s)	212, 708
BstMBI	GATC	2 cut(s)	285, 596
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 776
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	185, 199
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	85, 577
BstV2I	GAAGAC	4 cut(s)	109, 116, 486, 602
BstX2I	RGATCY	2 cut(s)	285, 596
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	2 cut(s)	285, 596
BsuRI	GGCC	2 cut(s)	190, 199
BtgI	CCRYGG	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	506, 589
BtuMI	TCGCGA	1 cut(s)	499
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	1 cut(s)	721
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	3 cut(s)	189, 198, 647
Csp6I	GTAC	2 cut(s)	150, 336
CviAII	CATG	4 cut(s)	142, 291, 546, 657
CviQI	GTAC	2 cut(s)	150, 336
DdeI	CTNAG	2 cut(s)	242, 661
DpnI	GATC	2 cut(s)	287, 598
DpnII	GATC	2 cut(s)	285, 596
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	2 cut(s)	322, 681
Ecl136II	GAGCTC	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	647
Eco47III	AGCGCT	1 cut(s)	720
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	2 cut(s)	103, 530
EcoICRI	GAGCTC	1 cut(s)	312
EcoNI	CCTNNNNNAGG	1 cut(s)	618
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	314
FaeI	CATG	4 cut(s)	145, 294, 549, 660
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	4 cut(s)	141, 290, 545, 656
FauNDI	CATATG	1 cut(s)	682
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	4 cut(s)	74, 251, 254, 566
FokI	GGATG	1 cut(s)	460
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	4 cut(s)	74, 251, 254, 566
GlaI	GCGC	1 cut(s)	720
GluI	GCNGC	4 cut(s)	74, 251, 254, 566
GsuI	CTGGAG	3 cut(s)	247, 613, 690
HaeII	RGCGCY	1 cut(s)	722
HaeIII	GGCC	2 cut(s)	190, 199
HapII	CCGG	3 cut(s)	201, 213, 324
HhaI	GCGC	1 cut(s)	721
Hin1II	CATG	4 cut(s)	145, 294, 549, 660
Hin6I	GCGC	1 cut(s)	719
HinP1I	GCGC	1 cut(s)	719
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	4 cut(s)	327, 436, 697, 797
HpaII	CCGG	3 cut(s)	201, 213, 324
HphI	GGTGA	4 cut(s)	97, 202, 313, 792
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	7 cut(s)	80, 129, 245, 332, 424, 558, 582
Hpy188III	TCNNGA	6 cut(s)	104, 226, 283, 498, 530, 734
Hpy8I	GTNNAC	1 cut(s)	29
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	4 cut(s)	246, 289, 599, 660
HpyCH4III	ACNGT	4 cut(s)	373, 428, 466, 676
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	6 cut(s)	158, 355, 369, 565, 770, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 776
HpyF3I	CTNAG	2 cut(s)	242, 661
HpySE526I	ACGT	1 cut(s)	338
Hsp92II	CATG	4 cut(s)	145, 294, 549, 660
HspAI	GCGC	1 cut(s)	719
Kzo9I	GATC	2 cut(s)	285, 596
LmnI	GCTCC	3 cut(s)	99, 309, 317
Lsp1109I	GCAGC	2 cut(s)	85, 577
LweI	GCATC	3 cut(s)	179, 438, 722
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	3 cut(s)	269, 416, 504
MalI	GATC	2 cut(s)	287, 598
MboI	GATC	2 cut(s)	285, 596
MboII	GAAGA	7 cut(s)	73, 109, 116, 252, 481, 491, 602
MflI	RGATCY	2 cut(s)	285, 596
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	3 cut(s)	384, 539, 739
MlyI	GAGTC	1 cut(s)	791
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	5 cut(s)	59, 81, 329, 424, 614
MroXI	GAANNNNTTC	2 cut(s)	235, 609
MslI	CAYNNNNRTG	1 cut(s)	102
MspI	CCGG	3 cut(s)	201, 213, 324
MspR9I	CCNGG	2 cut(s)	187, 201
MvaI	CCWGG	1 cut(s)	187
MvnI	CGCG	1 cut(s)	499
MwoI	GCNNNNNNNGC	2 cut(s)	196, 776
NciI	CCSGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	2 cut(s)	285, 596
NlaIII	CATG	4 cut(s)	145, 294, 549, 660
NlaIV	GGNNCC	1 cut(s)	95
NmuCI	GTSAC	2 cut(s)	269, 504
NruI	TCGCGA	1 cut(s)	499
PdmI	GAANNNNTTC	2 cut(s)	235, 609
PfeI	GAWTC	3 cut(s)	327, 436, 697
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	4 cut(s)	75, 252, 255, 567
PleI	GAGTC	1 cut(s)	791
PpsI	GAGTC	1 cut(s)	791
PpuMI	RGGWCCY	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	647
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	3 cut(s)	189, 198, 647
PspPPI	RGGWCCY	1 cut(s)	647
PsuI	RGATCY	2 cut(s)	285, 596
PsyI	GACNNNGTC	1 cut(s)	142
RruI	TCGCGA	1 cut(s)	499
RsaI	GTAC	2 cut(s)	151, 337
RsaNI	GTAC	2 cut(s)	150, 336
RseI	CAYNNNNRTG	1 cut(s)	102
SacI	GAGCTC	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	27
SatI	GCNGC	4 cut(s)	74, 251, 254, 566
Sau3AI	GATC	2 cut(s)	285, 596
Sau96I	GGNCC	3 cut(s)	189, 198, 647
SchI	GAGTC	1 cut(s)	791
ScrFI	CCNGG	2 cut(s)	187, 201
SduI	GDGCHC	1 cut(s)	314
SfaNI	GCATC	3 cut(s)	179, 438, 722
SfcI	CTRYAG	1 cut(s)	165
SfiI	GGCCNNNNNGGCC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	647
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	3 cut(s)	384, 539, 739
SsiI	CCGC	5 cut(s)	248, 251, 254, 307, 692
SstI	GAGCTC	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	185, 199
TaaI	ACNGT	4 cut(s)	373, 428, 466, 676
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	2 cut(s)	28, 735
TasI	AATT	3 cut(s)	384, 539, 739
TatI	WGTACW	1 cut(s)	149
TauI	GCSGC	2 cut(s)	253, 256
TfiI	GAWTC	3 cut(s)	327, 436, 697
TscAI	CASTG	2 cut(s)	513, 596
TseFI	GTSAC	2 cut(s)	269, 504
TseI	GCWGC	2 cut(s)	73, 565
Tsp45I	GTSAC	2 cut(s)	269, 504
TspDTI	ATGAA	2 cut(s)	642, 699
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	2 cut(s)	513, 596
Tth111I	GACNNNGTC	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	647
XagI	CCTNNNNNAGG	1 cut(s)	618
XapI	RAATTY	1 cut(s)	739
XmiI	GTMKAC	1 cut(s)	28
XmnI	GAANNNNTTC	2 cut(s)	235, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.