Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004371

Physical Location & Seq

Genomic Coordinates Reverse (-)

369899 .. 373272

Gene Structure 3374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G006200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCTTCTGCTTGTGCAACGGCTCCAGCAGCCTGCATTTCAAGCCCAAACTGTCCCAGCAGTCTCAGCCACATACCCATTTGGAGAAGCTCTTCTCTAAGACCACCACCACCTTCTTTCAGTGACATCTCCTTCAAAATCCCATGTGGGTCTTTCAAGCGAAGCTCGAGCCTCACTGGATTCAGAACCCTCTCCCCTGTTATGCAATGGCAGGACTGCACAGTAAAGATGGAAATTGATGTGCCAATTTCAGTTGCTTATGATTGCTACTCTGATCGTGAGGCAATTCCCCGTTGGATGCCCTTTATTTCAACTGTGAAGATATTGGAAGACAAGCCTGACCTATCACGATGGTCACTTAAGTATAAAGCTTTTGGCCGTGATATTGAGTTCTCATGGCTTGCTCGAAATATGCAGCCTATACCGAATCAGAAAATCCACTGGAGATCTCTGGAAGGTCTTCCTAACAGAGGTGCTGTCCGGTTTTATCCAAAAGGTCCTTCATCATGCCTAGTAGAACTAACCGTGTCTTATGAAGTTCCTCCAATCCTGGCTCCAGTGGCATCAGCACTGCAACCTTTTCTTGAAAGTTTACTTGGACGTGGCTTGGAAAGGTTTGCAACATTTTCAAAAAGCTACAAATCAGACTCAACGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

220

Amino Acids

24.44

Weight (kDa)

9.12

Isoelectric Point (pI)

76.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02475 AT4G01883 AT4G01883 AT4G01883
fragaria_vesca	FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710
malus_domestica	MD09G1287000.v1.1 MD17G1279300.v1.1
prunus_persica	Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1
pyrus_communis	pycom09g19410 pycom17g27720
rosa_chinensis	RchiOBHm_Chr3g0486891
rosa_laevigata	RLG00000023048
rosa_multiflora	Rmu_sc0003470.1_g000011
rosa_roxburghii	Rroxscaffold_6G00395420
rosa_rugosa	Rorug03G0228600 Rorug03G0228600 Rorug03G0228600
rosa_samantha	Rh3AG277800 Rh3BG313600 Rh3CG311900 Rh3DG308400
rosa_wichuraiana	Rw3G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	470
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	6 cut(s)	42, 136, 157, 312, 587, 630
AjiI	CACGTC	1 cut(s)	602
AjnI	CCWGG	1 cut(s)	549
AjuI	GAANNNNNNNTTGG	4 cut(s)	484, 516, 579, 611
AluBI	AGCT	4 cut(s)	90, 165, 371, 636
AluI	AGCT	4 cut(s)	90, 165, 371, 636
Alw26I	GTCTC	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	2 cut(s)	29, 415
Asp700I	GAANNNNTTC	2 cut(s)	91, 459
AspS9I	GGNCC	1 cut(s)	497
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	497
BbsI	GAAGAC	2 cut(s)	336, 452
BbvI	GCAGC	2 cut(s)	41, 427
BccI	CCATC	2 cut(s)	223, 345
BceAI	ACGGC	2 cut(s)	36, 363
BciT130I	CCWGG	1 cut(s)	551
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	512
BfrI	CTTAAG	1 cut(s)	359
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	2 cut(s)	30, 416
BlsI	GCNGC	2 cut(s)	31, 417
Bme1390I	CCNGG	1 cut(s)	551
Bme18I	GGWCC	1 cut(s)	497
BmeT110I	CYCGRG	1 cut(s)	166
BmgBI	CACGTC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	2 cut(s)	24, 555
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	2 cut(s)	288, 572
BpiI	GAAGAC	2 cut(s)	336, 452
BpmI	CTGGAG	3 cut(s)	9, 463, 540
BsaWI	WCCGGW	1 cut(s)	480
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	3 cut(s)	181, 446, 557
Bse3DI	GCAATG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	551
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	3 cut(s)	181, 446, 557
BseXI	GCAGC	2 cut(s)	41, 427
BseYI	CCCAGC	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	202
BshFI	GGCC	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	481
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	378
BsoBI	CYCGRG	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	274, 446
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	24, 555
BspQI	GCTCTTC	1 cut(s)	97
BspTI	CTTAAG	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	212
BsrI	ACTGG	3 cut(s)	181, 446, 557
BssMI	GATC	2 cut(s)	274, 446
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	5 cut(s)	53, 223, 316, 526, 655
Bst6I	CTCTTC	1 cut(s)	97
BstAFI	CTTAAG	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	34, 402
BstDEI	CTNAG	2 cut(s)	65, 98
BstENI	CCTNNNNNAGG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	303
BstKTI	GATC	2 cut(s)	277, 449
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	274, 446
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 42, 66, 560
BstNI	CCWGG	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	549
BstV1I	GCAGC	2 cut(s)	41, 427
BstV2I	GAAGAC	2 cut(s)	336, 452
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BsuRI	GGCC	1 cut(s)	378
BtrI	CACGTC	1 cut(s)	602
BtsCI	GGATG	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	569
BtsIMutI	CAGTG	5 cut(s)	127, 174, 439, 564, 569
Cac8I	GCNNGC	2 cut(s)	34, 402
Cfr13I	GGNCC	1 cut(s)	497
CviAII	CATG	3 cut(s)	144, 396, 507
DdeI	CTNAG	2 cut(s)	65, 98
DpnI	GATC	2 cut(s)	276, 448
DpnII	GATC	2 cut(s)	274, 446
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	468
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	549
FaeI	CATG	3 cut(s)	147, 399, 510
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	3 cut(s)	143, 395, 506
Fnu4HI	GCNGC	2 cut(s)	30, 416
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	2 cut(s)	30, 416
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	2 cut(s)	30, 416
GsaI	CCCAGC	1 cut(s)	60
GsuI	CTGGAG	3 cut(s)	9, 463, 540
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	1 cut(s)	481
Hin1II	CATG	3 cut(s)	147, 399, 510
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	3 cut(s)	180, 427, 647
HpaII	CCGG	1 cut(s)	481
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	4 cut(s)	185, 274, 432, 646
Hpy188III	TCNNGA	4 cut(s)	278, 348, 452, 584
Hpy8I	GTNNAC	1 cut(s)	593
HpyAV	CCTTC	4 cut(s)	123, 142, 449, 510
HpyCH4III	ACNGT	5 cut(s)	53, 223, 316, 526, 655
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	7 cut(s)	17, 36, 205, 219, 415, 574, 620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 42, 66, 560
HpyF3I	CTNAG	2 cut(s)	65, 98
HpySE526I	ACGT	1 cut(s)	601
Hsp92II	CATG	3 cut(s)	147, 399, 510
Kzo9I	GATC	2 cut(s)	274, 446
LguI	GCTCTTC	1 cut(s)	97
LmnI	GCTCC	2 cut(s)	28, 559
Lsp1109I	GCAGC	2 cut(s)	41, 427
LweI	GCATC	2 cut(s)	288, 572
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	2 cut(s)	122, 354
MalI	GATC	2 cut(s)	276, 448
MboI	GATC	2 cut(s)	274, 446
MboII	GAAGA	4 cut(s)	84, 331, 341, 452
MflI	RGATCY	1 cut(s)	446
MluCI	AATT	3 cut(s)	234, 246, 285
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	5 cut(s)	182, 200, 274, 464, 552
MroXI	GAANNNNTTC	2 cut(s)	91, 459
MseI	TTAA	1 cut(s)	360
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	1 cut(s)	481
MspR9I	CCNGG	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	4 cut(s)	29, 42, 66, 560
NdeII	GATC	2 cut(s)	274, 446
NlaIII	CATG	3 cut(s)	147, 399, 510
NlaIV	GGNNCC	2 cut(s)	24, 555
NmuCI	GTSAC	2 cut(s)	122, 354
PaeR7I	CTCGAG	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	97
PdmI	GAANNNNTTC	2 cut(s)	91, 459
PfeI	GAWTC	2 cut(s)	180, 427
PkrI	GCNGC	2 cut(s)	31, 417
PleI	GAGTC	1 cut(s)	641
PpsI	GAGTC	1 cut(s)	641
PpuMI	RGGWCCY	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	2 cut(s)	24, 555
PspPI	GGNCC	1 cut(s)	497
PspPPI	RGGWCCY	1 cut(s)	497
PspXI	VCTCGAGB	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	446
SapI	GCTCTTC	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	2 cut(s)	30, 416
Sau3AI	GATC	2 cut(s)	274, 446
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	1 cut(s)	551
SfaNI	GCATC	2 cut(s)	288, 572
Sfr274I	CTCGAG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	497
SlaI	CTCGAG	1 cut(s)	166
SmlI	CTYRAG	2 cut(s)	166, 359
SmoI	CTYRAG	2 cut(s)	166, 359
Sse9I	AATT	3 cut(s)	234, 246, 285
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	549
TaaI	ACNGT	5 cut(s)	53, 223, 316, 526, 655
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	2 cut(s)	167, 406
TasI	AATT	3 cut(s)	234, 246, 285
TfiI	GAWTC	2 cut(s)	180, 427
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	5 cut(s)	127, 181, 446, 564, 576
TseFI	GTSAC	2 cut(s)	122, 354
TseI	GCWGC	2 cut(s)	29, 415
Tsp45I	GTSAC	2 cut(s)	122, 354
TspDTI	ATGAA	2 cut(s)	492, 549
TspRI	CASTG	5 cut(s)	127, 181, 446, 564, 576
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	497
XagI	CCTNNNNNAGG	1 cut(s)	468
XhoI	CTCGAG	1 cut(s)	166
XmnI	GAANNNNTTC	2 cut(s)	91, 459
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.