Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004371

Physical Location & Seq

Genomic Coordinates Reverse (-)

513699 .. 515422

Gene Structure 1724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02475.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCTGTAGTAGCAATTAACATGAACACGATCAATCACTTGTCCAAAACCTGTAAAACCCCAAATATCCAATCACCGATTTGCTTCGATCGCAAACCCTTTTCATATTCTCTCATTCCTCTGTTTCCAAAAACCCTAAATGGCTTCTCCTCTTACTCTTCTTCCGTTAGTCGCAGATCGAGATTCATCATTCCCAAGAGACGACGATTCTCTGTTTCCATGGAGTGGCAAGACTGCTCAGTAAAGATGGAGGTCGATGTTCCAGTATCAGTAGCGTATAATTTCTACTTGGATCGTGAATCTTTTCCTAAATGGATGCCTTTTATTTCATCTGTCCAGGTGTTAAAGGACAAGCCTGATCTATCACGTTGGTCACTCAAATACAATGCTTTTGGTCAAGACATTAAGTATTCTTGGCTTGCTCGTAATCTTCAGCCTACTCCTAATCAGAAAATCCATTGGAGATCTCTTGAAGGTCTTCCTAATAAAGGCAGCGTTCGATTCTTTCCTAAAGGTCCTTCATCGTGCATCGTAGAGCTAACCGTATCATATGAAGTCCCTGCCCTATTAACCCCTGTGGCATCGGTACTACGGCCTTTTATAGAAAGCTTGCTTAGAGGTGGACTTGAACGATTTGCAGCCTTGGCCAAAACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

219

Amino Acids

25.04

Weight (kDa)

9.94

Isoelectric Point (pI)

64.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	80 - 216	2.8e-09	Polyketide cyclase / dehydrase and lipid transport
Polyketide_cyc	PF03364	85 - 212	4.7e-18	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02475 AT4G01883 AT4G01883 AT4G01883
fragaria_vesca	FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710 FvH4_1g26710
malus_domestica	MD09G1287000.v1.1 MD17G1279300.v1.1
prunus_persica	Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1 Prupe.3G006200_v2.0.a1
pyrus_communis	pycom09g19410 pycom17g27720
rosa_chinensis	RchiOBHm_Chr3g0486891
rosa_laevigata	RLG00000023048
rosa_multiflora	Rmu_sc0003470.1_g000011
rosa_roxburghii	Rroxscaffold_6G00395420
rosa_rugosa	Rorug03G0228600 Rorug03G0228600 Rorug03G0228600
rosa_samantha	Rh3AG277800 Rh3BG313600 Rh3CG311900 Rh3DG308400
rosa_wichuraiana	Rw3G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	225
AclWI	GGATC	1 cut(s)	300
AcoI	YGGCCR	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	588
AfiI	CCNNNNNNNGG	2 cut(s)	225, 488
AgsI	TTSAA	2 cut(s)	473, 629
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	2 cut(s)	538, 609
AluI	AGCT	2 cut(s)	538, 609
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	1 cut(s)	300
AoxI	GGCC	2 cut(s)	593, 645
ApeKI	GCWGC	2 cut(s)	492, 638
Asp700I	GAANNNNTTC	2 cut(s)	303, 477
AspS9I	GGNCC	1 cut(s)	515
AsuHPI	GGTGA	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	515
BalI	TGGCCA	1 cut(s)	647
BbsI	GAAGAC	1 cut(s)	470
BbvI	GCAGC	2 cut(s)	504, 650
BccI	CCATC	1 cut(s)	241
BceAI	ACGGC	1 cut(s)	608
BciT130I	CCWGG	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	193
BfmI	CTRYAG	1 cut(s)	6
BglII	AGATCT	1 cut(s)	464
BisI	GCNGC	2 cut(s)	493, 639
BlsI	GCNGC	2 cut(s)	494, 640
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	1 cut(s)	515
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	3 cut(s)	306, 537, 590
BpiI	GAAGAC	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	219, 642
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 488
Bse1I	ACTGG	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	219, 642
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	225, 488
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	504, 650
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	595, 647
BsiEI	CGRYCG	1 cut(s)	91
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	2 cut(s)	225, 488
BsmAI	GTCTC	1 cut(s)	193
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	2 cut(s)	595, 647
Bsp143I	GATC	6 cut(s)	30, 88, 176, 292, 358, 464
Bsp19I	CCATGG	1 cut(s)	219
BspANI	GGCC	2 cut(s)	595, 647
BspCNI	CTCAG	1 cut(s)	251
BspPI	GGATC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	219, 642
BssMI	GATC	6 cut(s)	30, 88, 176, 292, 358, 464
BssT1I	CCWWGG	2 cut(s)	219, 642
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	420, 611
BstDEI	CTNAG	2 cut(s)	238, 614
BstDSI	CCRYGG	1 cut(s)	219
BstENI	CCTNNNNNAGG	1 cut(s)	486
BstF5I	GGATG	1 cut(s)	321
BstKTI	GATC	6 cut(s)	33, 91, 179, 295, 361, 467
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	6 cut(s)	30, 88, 176, 292, 358, 464
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 644
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	504, 650
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	595, 647
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	420, 611
Cfr13I	GGNCC	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	587
CviAII	CATG	2 cut(s)	22, 220
CviJI	RGCY	9 cut(s)	144, 355, 418, 436, 538, 595, 609, 641, 647
CviKI_1	RGCY	9 cut(s)	144, 355, 418, 436, 538, 595, 609, 641, 647
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	2 cut(s)	238, 614
DpnI	GATC	6 cut(s)	32, 90, 178, 294, 360, 466
DpnII	GATC	6 cut(s)	30, 88, 176, 292, 358, 464
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Eco130I	CCWWGG	2 cut(s)	219, 642
Eco47I	GGWCC	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	416
EcoNI	CCTNNNNNAGG	1 cut(s)	486
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	2 cut(s)	219, 642
ErhI	CCWWGG	2 cut(s)	219, 642
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	2 cut(s)	25, 223
FaiI	YATR	7 cut(s)	23, 106, 221, 279, 550, 552, 602
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	2 cut(s)	21, 219
FauNDI	CATATG	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	493, 639
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	2 cut(s)	493, 639
GluI	GCNGC	2 cut(s)	493, 639
HaeIII	GGCC	2 cut(s)	595, 647
Hin1II	CATG	2 cut(s)	25, 223
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	4 cut(s)	183, 207, 299, 501
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	623
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	4 cut(s)	180, 296, 398, 470
Hpy8I	GTNNAC	1 cut(s)	623
Hpy99I	CGWCG	1 cut(s)	207
HpyAV	CCTTC	2 cut(s)	467, 528
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	2 cut(s)	528, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 644
HpyF3I	CTNAG	2 cut(s)	238, 614
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	2 cut(s)	25, 223
Kzo9I	GATC	6 cut(s)	30, 88, 176, 292, 358, 464
LpnPI	CCDG	7 cut(s)	64, 276, 323, 350, 369, 573, 588
Lsp1109I	GCAGC	2 cut(s)	504, 650
LweI	GCATC	3 cut(s)	306, 537, 590
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	6 cut(s)	32, 90, 178, 294, 360, 466
MboI	GATC	6 cut(s)	30, 88, 176, 292, 358, 464
MboII	GAAGA	4 cut(s)	150, 153, 422, 470
MflI	RGATCY	1 cut(s)	464
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	2 cut(s)	15, 280
MluNI	TGGCCA	1 cut(s)	647
MnlI	CCTC	4 cut(s)	129, 160, 244, 611
Mox20I	TGGCCA	1 cut(s)	647
MroXI	GAANNNNTTC	2 cut(s)	303, 477
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	5 cut(s)	18, 344, 405, 569, 658
Msp20I	TGGCCA	1 cut(s)	647
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	90, 644
NcoI	CCATGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	6 cut(s)	30, 88, 176, 292, 358, 464
NlaIII	CATG	2 cut(s)	25, 223
NmuCI	GTSAC	1 cut(s)	372
PdmI	GAANNNNTTC	2 cut(s)	303, 477
PfeI	GAWTC	4 cut(s)	183, 207, 299, 501
PflMI	CCANNNNNTGG	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	494, 640
Ple19I	CGATCG	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	515
Psp5II	RGGWCCY	1 cut(s)	515
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	515
PspPPI	RGGWCCY	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	464
PvuI	CGATCG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
SaqAI	TTAA	5 cut(s)	18, 344, 405, 569, 658
SatI	GCNGC	2 cut(s)	493, 639
Sau3AI	GATC	6 cut(s)	30, 88, 176, 292, 358, 464
Sau96I	GGNCC	1 cut(s)	515
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	9 cut(s)	53, 255, 342, 370, 478, 517, 540, 611, 622
SfaNI	GCATC	3 cut(s)	306, 537, 590
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	515
Sse9I	AATT	2 cut(s)	15, 280
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	219, 642
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	4 cut(s)	87, 179, 255, 499
TasI	AATT	2 cut(s)	15, 280
TfiI	GAWTC	4 cut(s)	183, 207, 299, 501
Tru1I	TTAA	5 cut(s)	18, 344, 405, 569, 658
Tru9I	TTAA	5 cut(s)	18, 344, 405, 569, 658
TseFI	GTSAC	1 cut(s)	372
TseI	GCWGC	2 cut(s)	492, 638
Tsp45I	GTSAC	1 cut(s)	372
TspDTI	ATGAA	6 cut(s)	38, 93, 175, 318, 510, 567
TspGWI	ACGGA	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	515
XagI	CCTNNNNNAGG	1 cut(s)	486
XmnI	GAANNNNTTC	2 cut(s)	303, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.