MD17G1279200.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0013233
Physical Location & Seq
Reverse (-)
33926770 .. 33928061
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1279200.v1.1.491

Sequence Viewer

Length: 873 bp
ATGGATATTAATAATGTTCATGATCAGATGAGATCAGCACGTTATGGCTCATTAGCAGCAGCAGCAACTCATGATCAACCAATTGAAGGACTGGACTTAAGAAAAGGTCCATGGACAGCCGAGGAAGACTCCATTCTCAACGATTACGTCAACATCCATGGTGAAGGTCGCTGGAATTCCTTGGCTTGTCATGCAGGTCTGAAACGAACTGGCAAAAGCTGCAGATTAAGGTGGTTAAACTACTTGCGACCAAATGTTCAACGTGGAAACATAACTCTCCAAGAACAACTTATAATTCTTCAACTTCATTCCCGCTGGGGCAACAGGTGGTCCAAGATAGCCGAATACTTGCCTGGTAGAACAGACAATGAGATAAAGAACTATTGGAGAACAAGAGTGCAGAAGCAAGCCAAACAACTCAAATGTGACGTTAACAGCAAACAATTTCAAGACGCCATGCGTTACGTCTGGATTCCCCGTCTAATTGAACGGATCGGGTCCTTGCCCGAAGCTGTACCAGAACAACCCAGTACTTGTATCACTACGACATCTGAGTCTGAGTGTCAGTACTTGGTTGATCCTAATTTCGTGCCCGAAACCTCTTGCAGTACTTCATCAGAGTCATATGATCAGGTTCAAGTTTGTTCAATTCCCGCCGACCCAACTAGCAGTGGTGACGAATTCATGACTTATCCAAGCAGCGGTCAATATGGTTCAGAAAACGGGTCGGGTTGTAGCCAAAATGGTATAAATTCAGATATTGATGGCTTTGAGCAAAGCAATTATTGGTCAACCGGTGGGGACACATCAGTGGAGAACTTGTGGACTGAAGAGAATATATGGTTCTTGCAACAACAGCTTAGTGATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

291

Amino Acids

32.92

Weight (kDa)

4.93

Isoelectric Point (pI)

61.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 35 - 82 3.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 38 - 95 2.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 88 - 131 9.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 92 - 139 3.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47190
fragaria_vesca FvH4_1g26720
malus_domestica MD09G1286900.v1.1 MD17G1279200.v1.1
prunus_persica Prupe.3G006300_v2.0.a1
pyrus_communis pycom17g27710
rosa_chinensis RchiOBHm_Chr3g0486901
rosa_laevigata RLG00000023046
rosa_multiflora Rmu_sc0000501.1_g000017 Rmu_sc0003470.1_g000020
rosa_roxburghii Rroxscaffold_6G00395370
rosa_rugosa Rorug03G0228600 Rorug03G0228700
rosa_samantha Rh3AG278000 Rh3BG313800 Rh3CG312200 Rh3DG308500
rosa_wichuraiana Rw3G024680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
AasI GACNNNNNNGTC 1 cut(s) 553
Acc36I ACCTGC 1 cut(s) 185
AciI CCGC 3 cut(s) 313, 654, 702
AclWI GGATC 2 cut(s) 500, 572
AcsI RAATTY 3 cut(s) 175, 680, 751
AcuI CTGAAG 1 cut(s) 849
AcyI GRCGYC 1 cut(s) 453
AfaI GTAC 4 cut(s) 516, 532, 569, 610
AfiI CCNNNNNNNGG 2 cut(s) 86, 701
AflII CTTAAG 1 cut(s) 97
AgeI ACCGGT 1 cut(s) 794
AgsI TTSAA 7 cut(s) 86, 260, 302, 449, 488, 638, 648
AjnI CCWGG 1 cut(s) 352
AleI CACNNNNGTG 1 cut(s) 809
AluBI AGCT 3 cut(s) 219, 512, 859
AluI AGCT 3 cut(s) 219, 512, 859
AlwI GGATC 2 cut(s) 500, 572
ApeKI GCWGC 5 cut(s) 56, 59, 62, 219, 699
ApoI RAATTY 3 cut(s) 175, 680, 751
AseI ATTAAT 1 cut(s) 9
AsiGI ACCGGT 1 cut(s) 794
AspS9I GGNCC 3 cut(s) 107, 330, 498
AsuHPI GGTGA 2 cut(s) 173, 686
AvaII GGWCC 3 cut(s) 107, 330, 498
BaeGI GKGCMC 1 cut(s) 594
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 5 cut(s) 68, 71, 74, 206, 711
BccI CCATC 1 cut(s) 758
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 3 cut(s) 22, 73, 628
BfaI CTAG 1 cut(s) 666
BfmI CTRYAG 1 cut(s) 220
BfrI CTTAAG 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 185
BisI GCNGC 5 cut(s) 57, 60, 63, 220, 700
BlsI GCNGC 5 cut(s) 58, 61, 64, 221, 701
BmcAI AGTACT 3 cut(s) 532, 569, 610
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 3 cut(s) 107, 330, 498
BmgT120I GGNCC 3 cut(s) 107, 330, 498
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 1 cut(s) 354
BmrI ACTGGG 1 cut(s) 522
BmuI ACTGGG 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BsaHI GRCGYC 1 cut(s) 453
BsaJI CCNNGG 4 cut(s) 110, 120, 157, 180
BsaWI WCCGGW 1 cut(s) 794
BsaXI ACNNNNNCTCC 2 cut(s) 806, 836
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 701
Bse118I RCCGGY 1 cut(s) 794
Bse1I ACTGG 3 cut(s) 96, 214, 528
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 4 cut(s) 110, 120, 157, 180
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 86, 701
BseMII CTCAG 2 cut(s) 543, 549
BseNI ACTGG 3 cut(s) 96, 214, 528
BseSI GKGCMC 1 cut(s) 594
BseXI GCAGC 5 cut(s) 68, 71, 74, 206, 711
BseYI CCCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 419
BshTI ACCGGT 1 cut(s) 794
BsiSI CCGG 1 cut(s) 795
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 2 cut(s) 86, 701
BsmFI GGGAC 1 cut(s) 815
Bsp1286I GDGCHC 1 cut(s) 594
Bsp143I GATC 6 cut(s) 22, 32, 73, 492, 577, 628
Bsp19I CCATGG 2 cut(s) 110, 157
BspACI CCGC 3 cut(s) 313, 654, 702
BspCNI CTCAG 2 cut(s) 544, 550
BspHI TCATGA 3 cut(s) 19, 70, 684
BspLI GGNNCC 1 cut(s) 499
BspMAI CTGCAG 1 cut(s) 224
BspMI ACCTGC 1 cut(s) 185
BspPI GGATC 2 cut(s) 500, 572
BspTI CTTAAG 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 794
BsrI ACTGG 3 cut(s) 96, 214, 528
BssAI RCCGGY 1 cut(s) 794
BssECI CCNNGG 4 cut(s) 110, 120, 157, 180
BssMI GATC 6 cut(s) 22, 32, 73, 492, 577, 628
BssNI GRCGYC 1 cut(s) 453
BssT1I CCWWGG 3 cut(s) 110, 157, 180
Bst2UI CCWGG 1 cut(s) 354
Bst6I CTCTTC 1 cut(s) 825
BstACI GRCGYC 1 cut(s) 453
BstAFI CTTAAG 1 cut(s) 97
BstAPI GCANNNNNTGC 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 3 cut(s) 552, 558, 860
BstDSI CCRYGG 2 cut(s) 110, 157
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 6 cut(s) 25, 35, 76, 495, 580, 631
BstMBI GATC 6 cut(s) 22, 32, 73, 492, 577, 628
BstMWI GCNNNNNNNGC 4 cut(s) 62, 191, 219, 856
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 220
BstSLI GKGCMC 1 cut(s) 594
BstV1I GCAGC 5 cut(s) 68, 71, 74, 206, 711
BstV2I GAAGAC 1 cut(s) 132
BtgI CCRYGG 2 cut(s) 110, 157
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 676
BtsIMutI CAGTG 2 cut(s) 676, 816
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 408
CciI TCATGA 3 cut(s) 19, 70, 684
Cfr10I RCCGGY 1 cut(s) 794
Cfr13I GGNCC 3 cut(s) 107, 330, 498
CseI GACGC 1 cut(s) 461
Csp6I GTAC 4 cut(s) 515, 531, 568, 609
CspAI ACCGGT 1 cut(s) 794
CviAII CATG 7 cut(s) 20, 71, 111, 158, 191, 457, 685
CviQI GTAC 4 cut(s) 515, 531, 568, 609
DdeI CTNAG 3 cut(s) 552, 558, 860
DpnI GATC 6 cut(s) 24, 34, 75, 494, 579, 630
DpnII GATC 6 cut(s) 22, 32, 73, 492, 577, 628
DrdI GACNNNNNNGTC 1 cut(s) 553
DseDI GACNNNNNNGTC 1 cut(s) 553
Eam1104I CTCTTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 825
Eco130I CCWWGG 3 cut(s) 110, 157, 180
Eco47I GGWCC 3 cut(s) 107, 330, 498
Eco57I CTGAAG 1 cut(s) 849
EcoO109I RGGNCCY 1 cut(s) 498
EcoRI GAATTC 2 cut(s) 175, 680
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 3 cut(s) 110, 157, 180
ErhI CCWWGG 3 cut(s) 110, 157, 180
FaeI CATG 7 cut(s) 23, 74, 114, 161, 194, 460, 688
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 1 cut(s) 815
FatI CATG 7 cut(s) 19, 70, 110, 157, 190, 456, 684
FauI CCCGC 2 cut(s) 320, 661
FauNDI CATATG 1 cut(s) 625
FbaI TGATCA 3 cut(s) 22, 73, 628
Fnu4HI GCNGC 5 cut(s) 57, 60, 63, 220, 700
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 5 cut(s) 57, 60, 63, 220, 700
FspBI CTAG 1 cut(s) 666
GluI GCNGC 5 cut(s) 57, 60, 63, 220, 700
GsaI CCCAGC 1 cut(s) 319
HapII CCGG 1 cut(s) 795
HgaI GACGC 1 cut(s) 461
Hin1I GRCGYC 1 cut(s) 453
Hin1II CATG 7 cut(s) 23, 74, 114, 161, 194, 460, 688
HincII GTYRAC 3 cut(s) 151, 433, 792
HindII GTYRAC 3 cut(s) 151, 433, 792
HinfI GANTC 4 cut(s) 128, 472, 554, 620
HpaI GTTAAC 1 cut(s) 433
HpaII CCGG 1 cut(s) 795
HphI GGTGA 2 cut(s) 173, 686
Hpy166II GTNNAC 4 cut(s) 151, 433, 792, 825
Hpy188I TCNGA 7 cut(s) 27, 201, 553, 559, 619, 718, 757
Hpy188III TCNNGA 5 cut(s) 20, 71, 449, 469, 685
Hpy8I GTNNAC 4 cut(s) 151, 433, 792, 825
HpyAV CCTTC 2 cut(s) 80, 158
HpyCH4IV ACGT 5 cut(s) 40, 147, 262, 429, 465
HpyCH4V TGCA 5 cut(s) 194, 222, 400, 606, 850
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 191, 219, 856
HpyF3I CTNAG 3 cut(s) 552, 558, 860
HpySE526I ACGT 5 cut(s) 40, 147, 262, 429, 465
Hsp92I GRCGYC 1 cut(s) 453
Hsp92II CATG 7 cut(s) 23, 74, 114, 161, 194, 460, 688
Ksp22I TGATCA 3 cut(s) 22, 73, 628
KspAI GTTAAC 1 cut(s) 433
Kzo9I GATC 6 cut(s) 22, 32, 73, 492, 577, 628
Lsp1109I GCAGC 5 cut(s) 68, 71, 74, 206, 711
MaeI CTAG 1 cut(s) 666
MaeII ACGT 5 cut(s) 40, 147, 262, 429, 465
MaeIII GTNAC 3 cut(s) 425, 461, 674
MalI GATC 6 cut(s) 24, 34, 75, 494, 579, 630
MboI GATC 6 cut(s) 22, 32, 73, 492, 577, 628
MboII GAAGA 3 cut(s) 137, 290, 842
MfeI CAATTG 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 594
MlyI GAGTC 3 cut(s) 122, 563, 629
MnlI CCTC 2 cut(s) 115, 610
MseI TTAA 5 cut(s) 9, 98, 227, 236, 432
MslI CAYNNNNRTG 1 cut(s) 809
MspA1I CMGCKG 2 cut(s) 315, 702
MspCI CTTAAG 1 cut(s) 97
MspI CCGG 1 cut(s) 795
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 4 cut(s) 62, 191, 219, 856
NcoI CCATGG 2 cut(s) 110, 157
NdeI CATATG 1 cut(s) 625
NdeII GATC 6 cut(s) 22, 32, 73, 492, 577, 628
NlaIII CATG 7 cut(s) 23, 74, 114, 161, 194, 460, 688
NlaIV GGNNCC 1 cut(s) 499
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 2 cut(s) 425, 674
OliI CACNNNNGTG 1 cut(s) 809
PagI TCATGA 3 cut(s) 19, 70, 684
PfeI GAWTC 1 cut(s) 472
PinAI ACCGGT 1 cut(s) 794
PkrI GCNGC 5 cut(s) 58, 61, 64, 221, 701
PleI GAGTC 3 cut(s) 122, 562, 628
PpsI GAGTC 3 cut(s) 122, 562, 628
PpuMI RGGWCCY 1 cut(s) 498
PshBI ATTAAT 1 cut(s) 9
PsiI TTATAA 1 cut(s) 293
Psp5II RGGWCCY 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 315
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 3 cut(s) 107, 330, 498
PspPPI RGGWCCY 1 cut(s) 498
PstI CTGCAG 1 cut(s) 224
RsaI GTAC 4 cut(s) 516, 532, 569, 610
RsaNI GTAC 4 cut(s) 515, 531, 568, 609
RseI CAYNNNNRTG 1 cut(s) 809
SaqAI TTAA 5 cut(s) 9, 98, 227, 236, 432
SatI GCNGC 5 cut(s) 57, 60, 63, 220, 700
Sau3AI GATC 6 cut(s) 22, 32, 73, 492, 577, 628
Sau96I GGNCC 3 cut(s) 107, 330, 498
ScaI AGTACT 3 cut(s) 532, 569, 610
SchI GAGTC 3 cut(s) 122, 563, 629
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 594
SfcI CTRYAG 1 cut(s) 220
SinI GGWCC 3 cut(s) 107, 330, 498
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
SsiI CCGC 3 cut(s) 313, 654, 702
SspMI CTAG 1 cut(s) 666
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 3 cut(s) 110, 157, 180
TaiI ACGT 5 cut(s) 43, 150, 265, 432, 468
TatI WGTACW 3 cut(s) 530, 567, 608
TfiI GAWTC 1 cut(s) 472
Tru1I TTAA 5 cut(s) 9, 98, 227, 236, 432
Tru9I TTAA 5 cut(s) 9, 98, 227, 236, 432
TscAI CASTG 2 cut(s) 676, 816
TseFI GTSAC 2 cut(s) 425, 674
TseI GCWGC 5 cut(s) 56, 59, 62, 219, 699
Tsp45I GTSAC 2 cut(s) 425, 674
TspDTI ATGAA 4 cut(s) 8, 296, 603, 673
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 2 cut(s) 676, 816
Vha464I CTTAAG 1 cut(s) 97
VpaK11BI GGWCC 3 cut(s) 107, 330, 498
VspI ATTAAT 1 cut(s) 9
XapI RAATTY 3 cut(s) 175, 680, 751
XspI CTAG 1 cut(s) 666
ZrmI AGTACT 3 cut(s) 532, 569, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.