Prupe.3G006300_v2.0.a1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013233
Physical Location & Seq
Forward (+)
381947 .. 383803
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G006300.1

Sequence Viewer

Length: 897 bp
ATGGATATGGCCGATGTTCATGTTCATGATCACGTGAGAGCAGGTTATGGCTCATCAGCAGCACCAGCAGAAATTCATGATCAAATACCAAGTGAAGAAGAAGACGTCGACTTAAGAAAAGGACCATGGACAGTTGAGGAAGACTCCGTTCTCTTCGATTACATCAACATCCACGGCGAAGGGCGCTGGAATTCACTGGCTCGCCATGCAGGTCTTAAACGAACTGGTAAAAGCTGCAGATTAAGATGGTTAAATTACTTGCGGCCCAGTGTTCGACGAGGAAACATAACCCTCCAAGAACAGCTTTTAATTCTTCAACTTCATTCTCGCTGGGGAAACAGGTGGTCCAAGATAGCCGAATACTTGCCTGGTAGAACAGACAATGAGATTAAGAACTACTGGAGAACAAGAGTCCAAAAGCAAGCAAAGCAGCTCAAATGTGACGTCAACAGCAAACAATTCCAAGACGCCATGCGTTACGTCTGGATTCCCCGCCTTATAGAGCGGATCCAGGCATTGCCTCAATCTTTACCGGGTCAATCCAGTACTGAGAGTACCGGTCTCACCACCGCATCCGAATCTCAAAACTGGATTGACTCGAATTTGATGCCCGAAACATCGGGCAGTACGTCATCAGAGTCGTCAGATCAGCTTCAAGTTTGTTCAATTCCGGACCCTACTACTACTGATCAATTCATGAACTATCCATCTACGAATCAATATGGTTCAGACAACGGGTCGGGTTGCTACGAATATGGTACAAATTCAGATTTTCTAGGTTTTGAACAAAGCAATTATTGGTCATCAAGTGGTGGGGACATATCAGTGGAGAATTTGTGGAATGAAGAGAATATATGGTTCCTGCAACAACAGCTTAGTGATGACCAGTGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

299

Amino Acids

34.14

Weight (kDa)

4.98

Isoelectric Point (pI)

65.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47190
fragaria_vesca FvH4_1g26720
malus_domestica MD09G1286900.v1.1 MD17G1279200.v1.1
prunus_persica Prupe.3G006300_v2.0.a1
pyrus_communis pycom17g27710
rosa_chinensis RchiOBHm_Chr3g0486901
rosa_laevigata RLG00000023046
rosa_multiflora Rmu_sc0000501.1_g000017 Rmu_sc0003470.1_g000020
rosa_roxburghii Rroxscaffold_6G00395370
rosa_rugosa Rorug03G0228600 Rorug03G0228700
rosa_samantha Rh3AG278000 Rh3BG313800 Rh3CG312200 Rh3DG308500
rosa_wichuraiana Rw3G024680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 108, 447
Acc36I ACCTGC 2 cut(s) 32, 200
AccBSI CCGCTC 1 cut(s) 505
AccI GTMKAC 1 cut(s) 108
AccIII TCCGGA 1 cut(s) 670
AciI CCGC 4 cut(s) 262, 493, 505, 570
AclWI GGATC 2 cut(s) 502, 515
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 5 cut(s) 72, 190, 601, 763, 832
AcvI CACGTG 1 cut(s) 34
AcyI GRCGYC 3 cut(s) 105, 444, 468
AfaI GTAC 4 cut(s) 547, 556, 628, 760
AflII CTTAAG 1 cut(s) 112
AgeI ACCGGT 1 cut(s) 557
AgsI TTSAA 4 cut(s) 317, 656, 666, 785
AhdI GACNNNNNGTC 1 cut(s) 736
AjnI CCWGG 2 cut(s) 367, 510
AluBI AGCT 5 cut(s) 234, 304, 433, 652, 874
AluI AGCT 5 cut(s) 234, 304, 433, 652, 874
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 2 cut(s) 502, 515
Aor13HI TCCGGA 1 cut(s) 670
AoxI GGCC 2 cut(s) 9, 263
ApeKI GCWGC 3 cut(s) 59, 234, 430
ApoI RAATTY 5 cut(s) 72, 190, 601, 763, 832
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
AsiGI ACCGGT 1 cut(s) 557
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 4 cut(s) 122, 264, 345, 673
AsuC2I CCSGG 1 cut(s) 534
AsuHPI GGTGA 1 cut(s) 556
AvaII GGWCC 3 cut(s) 122, 345, 673
BamHI GGATCC 1 cut(s) 507
BbrPI CACGTG 1 cut(s) 34
BbsI GAAGAC 2 cut(s) 108, 147
BbvI GCAGC 3 cut(s) 71, 221, 442
BccI CCATC 2 cut(s) 240, 715
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 589, 623
BciT130I CCWGG 2 cut(s) 369, 512
BclI TGATCA 3 cut(s) 28, 79, 688
BcnI CCSGG 1 cut(s) 534
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 1 cut(s) 776
BfmI CTRYAG 1 cut(s) 235
BfoI RGCGCY 1 cut(s) 187
BfrI CTTAAG 1 cut(s) 112
BfuAI ACCTGC 2 cut(s) 32, 200
BisI GCNGC 4 cut(s) 60, 235, 263, 431
BlsI GCNGC 4 cut(s) 61, 236, 264, 432
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 3 cut(s) 369, 512, 534
Bme18I GGWCC 3 cut(s) 122, 345, 673
BmeRI GACNNNNNGTC 1 cut(s) 736
BmgT120I GGNCC 4 cut(s) 122, 264, 345, 673
BmiI GGNNCC 3 cut(s) 509, 675, 860
BmrFI CCNGG 3 cut(s) 369, 512, 534
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 581, 597
BmuI ACTGGG 1 cut(s) 261
BpiI GAAGAC 2 cut(s) 108, 147
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 1 cut(s) 421
BpuMI CCSGG 1 cut(s) 534
BsaAI YACGTR 1 cut(s) 34
BsaHI GRCGYC 3 cut(s) 105, 444, 468
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 2 cut(s) 125, 172
BsaWI WCCGGW 2 cut(s) 557, 670
BsaXI ACNNNNNCTCC 2 cut(s) 821, 851
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 7 cut(s) 201, 229, 267, 404, 543, 593, 886
Bse3DI GCAATG 1 cut(s) 515
BseAI TCCGGA 1 cut(s) 670
BseBI CCWGG 2 cut(s) 369, 512
BseDI CCNNGG 2 cut(s) 125, 172
BseGI GGATG 2 cut(s) 168, 572
BseMI GCAATG 1 cut(s) 515
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 7 cut(s) 201, 229, 267, 404, 543, 593, 886
BseXI GCAGC 3 cut(s) 71, 221, 442
BseYI CCCAGC 1 cut(s) 330
BshFI GGCC 2 cut(s) 11, 265
BshTI ACCGGT 1 cut(s) 557
BsiSI CCGG 3 cut(s) 533, 558, 671
BslFI GGGAC 1 cut(s) 830
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 1 cut(s) 830
BsnI GGCC 2 cut(s) 11, 265
Bso31I GGTCTC 1 cut(s) 566
Bsp13I TCCGGA 1 cut(s) 670
Bsp143I GATC 5 cut(s) 28, 79, 507, 646, 688
Bsp19I CCATGG 1 cut(s) 125
BspACI CCGC 4 cut(s) 262, 493, 505, 570
BspANI GGCC 2 cut(s) 11, 265
BspCNI CTCAG 1 cut(s) 541
BspEI TCCGGA 1 cut(s) 670
BspHI TCATGA 3 cut(s) 25, 76, 696
BspLI GGNNCC 3 cut(s) 509, 675, 860
BspMAI CTGCAG 1 cut(s) 239
BspMI ACCTGC 2 cut(s) 32, 200
BspPI GGATC 2 cut(s) 502, 515
BspTI CTTAAG 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 566
BsrBI CCGCTC 1 cut(s) 505
BsrDI GCAATG 1 cut(s) 515
BsrFI RCCGGY 1 cut(s) 557
BsrI ACTGG 7 cut(s) 201, 229, 267, 404, 543, 593, 886
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 2 cut(s) 125, 172
BssMI GATC 5 cut(s) 28, 79, 507, 646, 688
BssNI GRCGYC 3 cut(s) 105, 444, 468
BssT1I CCWWGG 1 cut(s) 125
Bst2UI CCWGG 2 cut(s) 369, 512
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 2 cut(s) 158, 840
BstACI GRCGYC 3 cut(s) 105, 444, 468
BstAFI CTTAAG 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 2 cut(s) 202, 423
BstDEI CTNAG 2 cut(s) 549, 875
BstDSI CCRYGG 2 cut(s) 125, 172
BstF5I GGATG 2 cut(s) 168, 572
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 5 cut(s) 31, 82, 510, 649, 691
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 5 cut(s) 28, 79, 507, 646, 688
BstMWI GCNNNNNNNGC 5 cut(s) 65, 183, 206, 427, 871
BstNI CCWGG 2 cut(s) 369, 512
BstSCI CCNGG 3 cut(s) 367, 510, 532
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 3 cut(s) 71, 221, 442
BstV2I GAAGAC 2 cut(s) 108, 147
BstX2I RGATCY 1 cut(s) 507
BstYI RGATCY 1 cut(s) 507
BsuRI GGCC 2 cut(s) 11, 265
BtgI CCRYGG 2 cut(s) 125, 172
BtsCI GGATG 2 cut(s) 168, 572
BtsIMutI CAGTG 4 cut(s) 194, 274, 831, 893
BveI ACCTGC 2 cut(s) 32, 200
Cac8I GCNNGC 2 cut(s) 202, 423
CciI TCATGA 3 cut(s) 25, 76, 696
CfoI GCGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 4 cut(s) 122, 264, 345, 673
CseI GACGC 1 cut(s) 476
Csp6I GTAC 4 cut(s) 546, 555, 627, 759
CspAI ACCGGT 1 cut(s) 557
CviAII CATG 7 cut(s) 20, 26, 77, 126, 206, 472, 697
CviQI GTAC 4 cut(s) 546, 555, 627, 759
DdeI CTNAG 2 cut(s) 549, 875
DpnI GATC 5 cut(s) 30, 81, 509, 648, 690
DpnII GATC 5 cut(s) 28, 79, 507, 646, 688
DriI GACNNNNNGTC 1 cut(s) 736
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 2 cut(s) 158, 840
Eam1105I GACNNNNNGTC 1 cut(s) 736
EarI CTCTTC 2 cut(s) 158, 840
Eco130I CCWWGG 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 566
Eco47I GGWCC 3 cut(s) 122, 345, 673
Eco72I CACGTG 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 367, 510
EcoT14I CCWWGG 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 7 cut(s) 23, 29, 80, 129, 209, 475, 700
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 830
FatI CATG 7 cut(s) 19, 25, 76, 125, 205, 471, 696
FauI CCCGC 1 cut(s) 500
FbaI TGATCA 3 cut(s) 28, 79, 688
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 4 cut(s) 60, 235, 263, 431
FokI GGATG 2 cut(s) 155, 559
Fsp4HI GCNGC 4 cut(s) 60, 235, 263, 431
FspBI CTAG 1 cut(s) 776
GlaI GCGC 1 cut(s) 185
GluI GCNGC 4 cut(s) 60, 235, 263, 431
GsaI CCCAGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 421
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 2 cut(s) 11, 265
HapII CCGG 3 cut(s) 533, 558, 671
HgaI GACGC 1 cut(s) 476
HhaI GCGC 1 cut(s) 186
Hin1I GRCGYC 3 cut(s) 105, 444, 468
Hin1II CATG 7 cut(s) 23, 29, 80, 129, 209, 475, 700
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HincII GTYRAC 2 cut(s) 109, 448
HindII GTYRAC 2 cut(s) 109, 448
HinfI GANTC 7 cut(s) 143, 411, 487, 578, 596, 638, 715
HpaII CCGG 3 cut(s) 533, 558, 671
HphI GGTGA 1 cut(s) 556
Hpy166II GTNNAC 2 cut(s) 109, 448
Hpy188I TCNGA 5 cut(s) 577, 637, 646, 730, 769
Hpy188III TCNNGA 5 cut(s) 26, 77, 484, 671, 697
Hpy8I GTNNAC 2 cut(s) 109, 448
Hpy99I CGWCG 2 cut(s) 110, 279
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 5 cut(s) 33, 105, 444, 480, 629
HpyCH4V TGCA 3 cut(s) 209, 237, 865
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 183, 206, 427, 871
HpyF3I CTNAG 2 cut(s) 549, 875
HpySE526I ACGT 5 cut(s) 33, 105, 444, 480, 629
Hsp92I GRCGYC 3 cut(s) 105, 444, 468
Hsp92II CATG 7 cut(s) 23, 29, 80, 129, 209, 475, 700
HspAI GCGC 1 cut(s) 184
Kpn2I TCCGGA 1 cut(s) 670
Ksp22I TGATCA 3 cut(s) 28, 79, 688
Kzo9I GATC 5 cut(s) 28, 79, 507, 646, 688
Lsp1109I GCAGC 3 cut(s) 71, 221, 442
LweI GCATC 2 cut(s) 581, 597
MaeI CTAG 1 cut(s) 776
MaeII ACGT 5 cut(s) 33, 105, 444, 480, 629
MaeIII GTNAC 2 cut(s) 440, 476
MalI GATC 5 cut(s) 30, 81, 509, 648, 690
MbiI CCGCTC 1 cut(s) 505
MboI GATC 5 cut(s) 28, 79, 507, 646, 688
MboII GAAGA 7 cut(s) 107, 110, 113, 145, 152, 305, 857
MflI RGATCY 1 cut(s) 507
MlyI GAGTC 4 cut(s) 137, 420, 590, 647
MnlI CCTC 4 cut(s) 130, 272, 302, 531
MroI TCCGGA 1 cut(s) 670
MseI TTAA 6 cut(s) 113, 216, 242, 251, 308, 390
MslI CAYNNNNRTG 2 cut(s) 24, 824
MspCI CTTAAG 1 cut(s) 112
MspI CCGG 3 cut(s) 533, 558, 671
MspR9I CCNGG 3 cut(s) 369, 512, 534
MvaI CCWGG 2 cut(s) 369, 512
MwoI GCNNNNNNNGC 5 cut(s) 65, 183, 206, 427, 871
NciI CCSGG 1 cut(s) 534
NcoI CCATGG 1 cut(s) 125
NdeII GATC 5 cut(s) 28, 79, 507, 646, 688
NlaIII CATG 7 cut(s) 23, 29, 80, 129, 209, 475, 700
NlaIV GGNNCC 3 cut(s) 509, 675, 860
NmuCI GTSAC 1 cut(s) 440
PagI TCATGA 3 cut(s) 25, 76, 696
PcsI WCGNNNNNNNCGW 1 cut(s) 626
PfeI GAWTC 3 cut(s) 487, 578, 715
PinAI ACCGGT 1 cut(s) 557
PkrI GCNGC 4 cut(s) 61, 236, 264, 432
PleI GAGTC 4 cut(s) 137, 419, 590, 646
PmaCI CACGTG 1 cut(s) 34
PmlI CACGTG 1 cut(s) 34
PpsI GAGTC 4 cut(s) 137, 419, 590, 646
Ppu21I YACGTR 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 367, 510
PspCI CACGTG 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 330
PspGI CCWGG 2 cut(s) 367, 510
PspN4I GGNNCC 3 cut(s) 509, 675, 860
PspPI GGNCC 4 cut(s) 122, 264, 345, 673
PstI CTGCAG 1 cut(s) 239
PsuI RGATCY 1 cut(s) 507
RsaI GTAC 4 cut(s) 547, 556, 628, 760
RsaNI GTAC 4 cut(s) 546, 555, 627, 759
RseI CAYNNNNRTG 2 cut(s) 24, 824
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 6 cut(s) 113, 216, 242, 251, 308, 390
SatI GCNGC 4 cut(s) 60, 235, 263, 431
Sau3AI GATC 5 cut(s) 28, 79, 507, 646, 688
Sau96I GGNCC 4 cut(s) 122, 264, 345, 673
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 4 cut(s) 137, 420, 590, 647
ScrFI CCNGG 3 cut(s) 369, 512, 534
SfaNI GCATC 2 cut(s) 581, 597
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 3 cut(s) 122, 345, 673
SmiMI CAYNNNNRTG 2 cut(s) 24, 824
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
SsiI CCGC 4 cut(s) 262, 493, 505, 570
SspMI CTAG 1 cut(s) 776
StyD4I CCNGG 3 cut(s) 367, 510, 532
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 5 cut(s) 36, 108, 447, 483, 632
TaqI TCGA 4 cut(s) 108, 156, 274, 599
TatI WGTACW 1 cut(s) 545
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 3 cut(s) 487, 578, 715
Tru1I TTAA 6 cut(s) 113, 216, 242, 251, 308, 390
Tru9I TTAA 6 cut(s) 113, 216, 242, 251, 308, 390
TscAI CASTG 4 cut(s) 201, 274, 831, 893
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 3 cut(s) 59, 234, 430
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 7 cut(s) 8, 14, 65, 311, 685, 713, 858
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 4 cut(s) 201, 274, 831, 893
Vha464I CTTAAG 1 cut(s) 112
VpaK11BI GGWCC 3 cut(s) 122, 345, 673
XapI RAATTY 5 cut(s) 72, 190, 601, 763, 832
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 1 cut(s) 776
ZraI GACGTC 2 cut(s) 106, 445
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.