AT2G47310

Flowering time control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016173
Physical Location & Seq
Forward (+)
19423589 .. 19427277
3689 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47310.1

Sequence Viewer

Length: 1539 bp
ATGGAGAGACGCGCCCCAAACGCATTCCCTGGTGCTCCACCACCAGTTCCCTACTATCATAACAACTACAACAACCCTCCTCATCATCAGATTCATCCGCCGCCGCCGCCGCACCACCATATCGCTGCCGTTGGATTCCACAAATACCCCCAAAACGACAACAGGGATCAGCGTTTCAATCAACCGCATTACTCCGGCCAACAGCAGAACATGATCGTTGATCAGAGTAATAACGCTCCTCCGCCGTTTCCGCCGAGTCCTTGCGGTGGCAGCAGCTTAAGGAAGAGACGGTCTCAATCAGCTACAGATAATGCTGATGGTAGTATTGCCAAGTTATATGTTGCGCCCATCTCAAAGACAGCTACTGAATATGATATCCGTCAGGTCTTTGAAAAATATGGTAATGTCACTGAGATCATTCTACCCAAAGATAAGATGACCGGTGAAAGGGCAGCTTACTGTTTTATTAAGTACAAAAAGGTAGAAGAGGGTAATGCGGCTATTGCAGCTTTAACTGAACAGTTTACCTTTCCTGGGGAAATGCTTCCAGTCAAGGTCCGATTTGCTGAAGCTGAACGAGAACGGATTGGTTTTGCCCCAGTGCAACTTCCTGATAACCCTAAACTATATGTTAGATGCCTCAACAAACAAACTACAAAAATGGAAGTCAATGAGGTCTTCTCTAGGTACGGAATCATTGAAGATATTTATATGGCACTTGACGACATGAAGATTTGTCGTGGGTATGCATTTGTTCAGTTTTCTTGTAAAGAGATGGCACTAGCGGCAATCAAAGCTTTAAATGGACTCTTTACCATACGGGGTTCTGATCAGCCTCTGATTGTTAGATTTGCTGATCCTAAAAAACCCCGTCTAGGGGAACAAAGGTCTACCTTTAACACTCCACCTGCAATGCAACACTTCGACCCAAATTGGCATTCACAACCATATCCCCAGTGGGAAAACAAGGAACCTGCACCCCCTAGAGTCGTTCAGCATCATGATTTCTCTTCACAGCCAAATCACTTCCCGCACCAAAATACTCAAGCAGTATCCGAGGTTCATAAACCACTGCATCAAGATATTCCACCTGCTAATTTTGAGAAGCATCAGAAATCTGAGACTGCCAGCGTGGAGACTAGAAGTGATGGTCAGAAGATTTCTAGTCATTCAAATGCATTCCATGAAGATCAAAATACAGTGAGCTCAGAGTGTGACTGGAGTGAACACACTTGTCCCAATGGGAATAAATATTACTTCCATTGCATCACTTGCGAAAGCACGTGGGAGAAACCGGACGAATACTCCATGTATGAAAGATGGTTGAAAGAGCAAACAAGGCTACAGGATGAAAAAATTAAATCTCCCCCGTTAAACAATGAGAGCCAAGAAGCAATCGAAAACAGCGAGCAAGTTGAGTCTGATGTATTACAACAGAATGGTGAACTCCAACAACCATCCTTATCCACAGCGGATCAGGAGAACAATGTAGTAGTATATCCAGTAACAACACTAGCTGTTGAAACAACATGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 WW

Protein Analysis

512

Amino Acids

58.37

Weight (kDa)

6.06

Isoelectric Point (pI)

58.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 112 - 175 1.2e-10 RNA recognition motif
RRM_1 PF00076 209 - 275 7.2e-13 RNA recognition motif
WW PF00397 405 - 432 9.1e-09 WW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47310
fragaria_vesca FvH4_1g26970
malus_domestica MD09G1285500.v1.1
prunus_persica Prupe.3G008500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487191
rosa_multiflora Rmu_sc0012751.1_g000001 Rmu_ssc0000366.1_g000028
rosa_roxburghii Rroxscaffold_6G00395040
rosa_rugosa Rorug03G0232100 Rorug03G0232200
rosa_samantha Rh3AG280100 Rh3BG316100 Rh3CG314200 Rh3DG311500
rosa_wichuraiana Rw3G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 916, 1099
Acc36I ACCTGC 3 cut(s) 916, 982, 1099
AccI GTMKAC 1 cut(s) 890
AccII CGCG 1 cut(s) 12
AclWI GGATC 3 cut(s) 174, 851, 1482
AcoI YGGCCR 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 588
AcvI CACGTG 1 cut(s) 1284
AfaI GTAC 2 cut(s) 473, 689
AfiI CCNNNNNNNGG 6 cut(s) 266, 447, 534, 875, 876, 877
AflII CTTAAG 1 cut(s) 277
AflIII ACRYGT 1 cut(s) 1529
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 6 cut(s) 178, 392, 701, 1173, 1327, 1523
AjnI CCWGG 2 cut(s) 28, 532
AjuI GAANNNNNNNTTGG 2 cut(s) 922, 954
AluBI AGCT 9 cut(s) 276, 302, 362, 455, 509, 572, 797, 1206, 1517
AluI AGCT 9 cut(s) 276, 302, 362, 455, 509, 572, 797, 1206, 1517
Alw21I GWGCWC 2 cut(s) 37, 1208
Alw26I GTCTC 4 cut(s) 280, 297, 1115, 1130
AlwI GGATC 3 cut(s) 174, 851, 1482
AlwNI CAGNNNCTG 2 cut(s) 365, 838
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 5 cut(s) 125, 270, 273, 452, 506
AsiGI ACCGGT 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 2 cut(s) 14, 346
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 2 cut(s) 455, 1454
AvaII GGWCC 1 cut(s) 556
BanII GRGCYC 1 cut(s) 1208
BbrPI CACGTG 1 cut(s) 1284
BbsI GAAGAC 1 cut(s) 670
Bbv12I GWGCWC 2 cut(s) 37, 1208
BbvI GCAGC 5 cut(s) 112, 282, 285, 464, 518
BccI CCATC 6 cut(s) 311, 356, 769, 1142, 1314, 1465
BceAI ACGGC 2 cut(s) 113, 229
BciT130I CCWGG 2 cut(s) 30, 534
BciVI GTATCC 1 cut(s) 1063
BclI TGATCA 2 cut(s) 220, 829
BcoDI GTCTC 4 cut(s) 280, 297, 1115, 1130
BfaI CTAG 7 cut(s) 684, 782, 875, 984, 1140, 1164, 1514
BfmI CTRYAG 2 cut(s) 303, 1343
BfrI CTTAAG 1 cut(s) 277
BfuAI ACCTGC 3 cut(s) 916, 982, 1099
BfuI GTATCC 1 cut(s) 1063
Bme1390I CCNGG 2 cut(s) 30, 534
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 1 cut(s) 972
BmrFI CCNGG 2 cut(s) 30, 534
BmrI ACTGGG 2 cut(s) 593, 949
BmsI GCATC 5 cut(s) 626, 1006, 1084, 1117, 1275
BmuI ACTGGG 2 cut(s) 593, 949
BpiI GAAGAC 1 cut(s) 670
BplI GAGNNNNNCTC 4 cut(s) 277, 309, 665, 697
BpmI CTGGAG 1 cut(s) 1240
BpuEI CTTGAG 1 cut(s) 1029
BsaAI YACGTR 1 cut(s) 1284
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 3 cut(s) 28, 533, 1056
BsaWI WCCGGW 2 cut(s) 440, 1294
BsaXI ACNNNNNCTCC 2 cut(s) 1289, 1319
Bsc4I CCNNNNNNNGG 6 cut(s) 266, 447, 534, 875, 876, 877
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 6 cut(s) 44, 548, 599, 955, 1223, 1502
Bse3DI GCAATG 2 cut(s) 918, 1261
BseBI CCWGG 2 cut(s) 30, 534
BseDI CCNNGG 3 cut(s) 28, 533, 1056
BseGI GGATG 3 cut(s) 94, 1354, 1457
BseLI CCNNNNNNNGG 6 cut(s) 266, 447, 534, 875, 876, 877
BseMI GCAATG 2 cut(s) 918, 1261
BseMII CTCAG 3 cut(s) 402, 1110, 1221
BseNI ACTGG 6 cut(s) 44, 548, 599, 955, 1223, 1502
BseRI GAGGAG 2 cut(s) 69, 228
BseXI GCAGC 5 cut(s) 112, 282, 285, 464, 518
BsgI GTGCAG 1 cut(s) 960
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 198
BshTI ACCGGT 1 cut(s) 440
BsiHKAI GWGCWC 2 cut(s) 37, 1208
BsiSI CCGG 3 cut(s) 195, 441, 1295
BslFI GGGAC 1 cut(s) 1221
BslI CCNNNNNNNGG 6 cut(s) 266, 447, 534, 875, 876, 877
BsmAI GTCTC 4 cut(s) 280, 297, 1115, 1130
BsmBI CGTCTC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 1221
BsmI GAATGC 3 cut(s) 23, 937, 1178
BsnI GGCC 1 cut(s) 198
Bso31I GGTCTC 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 37, 1208
Bsp143I GATC 8 cut(s) 166, 213, 220, 414, 829, 856, 1189, 1474
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 3 cut(s) 403, 1111, 1220
BspFNI CGCG 1 cut(s) 12
BspHI TCATGA 1 cut(s) 1000
BspLI GGNNCC 1 cut(s) 972
BspMI ACCTGC 3 cut(s) 916, 982, 1099
BspPI GGATC 3 cut(s) 174, 851, 1482
BspTI CTTAAG 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 297
BsrDI GCAATG 2 cut(s) 918, 1261
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 6 cut(s) 44, 548, 599, 955, 1223, 1502
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 3 cut(s) 28, 533, 1056
BssMI GATC 8 cut(s) 166, 213, 220, 414, 829, 856, 1189, 1474
Bst2UI CCWGG 2 cut(s) 30, 534
Bst4CI ACNGT 4 cut(s) 291, 461, 522, 1201
Bst6I CTCTTC 3 cut(s) 278, 480, 1015
BstAFI CTTAAG 1 cut(s) 277
BstAPI GCANNNNNTGC 1 cut(s) 1272
BstBAI YACGTR 1 cut(s) 1284
BstC8I GCNNGC 2 cut(s) 1129, 1409
BstDEI CTNAG 3 cut(s) 411, 1119, 1207
BstF5I GGATG 3 cut(s) 94, 1354, 1457
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 2 cut(s) 14, 346
BstKTI GATC 8 cut(s) 169, 216, 223, 417, 832, 859, 1192, 1477
BstMAI GTCTC 4 cut(s) 280, 297, 1115, 1130
BstMBI GATC 8 cut(s) 166, 213, 220, 414, 829, 856, 1189, 1474
BstNI CCWGG 2 cut(s) 30, 534
BstNSI RCATGY 1 cut(s) 1533
BstSCI CCNGG 2 cut(s) 28, 532
BstSFI CTRYAG 2 cut(s) 303, 1343
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 5 cut(s) 112, 282, 285, 464, 518
BstV2I GAAGAC 1 cut(s) 670
BsuI GTATCC 1 cut(s) 1063
BsuRI GGCC 1 cut(s) 198
BtsCI GGATG 3 cut(s) 94, 1354, 1457
BtsI GCAGTG 1 cut(s) 1070
BtsIMutI CAGTG 5 cut(s) 408, 606, 962, 1070, 1206
BveI ACCTGC 3 cut(s) 916, 982, 1099
Cac8I GCNNGC 2 cut(s) 1129, 1409
CaiI CAGNNNCTG 2 cut(s) 365, 838
CciI TCATGA 1 cut(s) 1000
CfoI GCGC 2 cut(s) 14, 346
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 556
CseI GACGC 1 cut(s) 18
Csp6I GTAC 2 cut(s) 472, 688
CspAI ACCGGT 1 cut(s) 440
CviAII CATG 6 cut(s) 211, 727, 1001, 1184, 1309, 1530
CviQI GTAC 2 cut(s) 472, 688
DdeI CTNAG 3 cut(s) 411, 1119, 1207
DpnI GATC 8 cut(s) 168, 215, 222, 416, 831, 858, 1191, 1476
DpnII GATC 8 cut(s) 166, 213, 220, 414, 829, 856, 1189, 1474
DraI TTTAAA 1 cut(s) 801
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 3 cut(s) 278, 480, 1015
EarI CTCTTC 3 cut(s) 278, 480, 1015
EciI GGCGGA 3 cut(s) 87, 231, 240
Ecl136II GAGCTC 1 cut(s) 1206
Eco24I GRGCYC 1 cut(s) 1208
Eco31I GGTCTC 1 cut(s) 297
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 556
Eco53kI GAGCTC 1 cut(s) 1206
Eco57I CTGAAG 1 cut(s) 588
Eco72I CACGTG 1 cut(s) 1284
EcoICRI GAGCTC 1 cut(s) 1206
EcoRII CCWGG 2 cut(s) 28, 532
EcoRV GATATC 1 cut(s) 376
EcoT22I ATGCAT 2 cut(s) 751, 1180
EcoT38I GRGCYC 1 cut(s) 1208
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 6 cut(s) 214, 730, 1004, 1187, 1312, 1533
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 1 cut(s) 1221
FatI CATG 6 cut(s) 210, 726, 1000, 1183, 1308, 1529
FauI CCCGC 1 cut(s) 1038
FbaI TGATCA 2 cut(s) 220, 829
FblI GTMKAC 1 cut(s) 890
FokI GGATG 3 cut(s) 81, 1361, 1444
FriOI GRGCYC 1 cut(s) 1208
FspBI CTAG 7 cut(s) 684, 782, 875, 984, 1140, 1164, 1514
GlaI GCGC 2 cut(s) 13, 345
GsuI CTGGAG 1 cut(s) 1240
HaeIII GGCC 1 cut(s) 198
HapII CCGG 3 cut(s) 195, 441, 1295
HgaI GACGC 1 cut(s) 18
HhaI GCGC 2 cut(s) 14, 346
Hin1II CATG 6 cut(s) 214, 730, 1004, 1187, 1312, 1533
Hin6I GCGC 2 cut(s) 12, 344
HinP1I GCGC 2 cut(s) 12, 344
HindIII AAGCTT 1 cut(s) 795
HinfI GANTC 7 cut(s) 91, 135, 256, 693, 807, 987, 1418
HpaII CCGG 3 cut(s) 195, 441, 1295
HphI GGTGA 2 cut(s) 455, 1454
Hpy166II GTNNAC 4 cut(s) 525, 891, 1226, 1445
Hpy188III TCNNGA 4 cut(s) 611, 1001, 1079, 1478
Hpy8I GTNNAC 4 cut(s) 525, 891, 1226, 1445
HpyCH4III ACNGT 4 cut(s) 291, 461, 522, 1201
HpyCH4IV ACGT 1 cut(s) 1283
HpyCH4V TGCA 9 cut(s) 506, 604, 749, 911, 916, 977, 1075, 1178, 1266
HpyF3I CTNAG 3 cut(s) 411, 1119, 1207
HpySE526I ACGT 1 cut(s) 1283
Hsp92II CATG 6 cut(s) 214, 730, 1004, 1187, 1312, 1533
HspAI GCGC 2 cut(s) 12, 344
Ksp22I TGATCA 2 cut(s) 220, 829
Kzo9I GATC 8 cut(s) 166, 213, 220, 414, 829, 856, 1189, 1474
LmnI GCTCC 2 cut(s) 40, 241
Lsp1109I GCAGC 5 cut(s) 112, 282, 285, 464, 518
LweI GCATC 5 cut(s) 626, 1006, 1084, 1117, 1275
MaeI CTAG 7 cut(s) 684, 782, 875, 984, 1140, 1164, 1514
MaeII ACGT 1 cut(s) 1283
MaeIII GTNAC 3 cut(s) 406, 1214, 1504
MalI GATC 8 cut(s) 168, 215, 222, 416, 831, 858, 1191, 1476
MboI GATC 8 cut(s) 166, 213, 220, 414, 829, 856, 1189, 1474
MboII GAAGA 8 cut(s) 295, 497, 670, 713, 742, 1002, 1168, 1199
MhlI GDGCHC 2 cut(s) 37, 1208
MluCI AATT 3 cut(s) 931, 1096, 1356
MlyI GAGTC 4 cut(s) 265, 801, 996, 1427
MmeI TCCRAC 2 cut(s) 112, 1474
MnlI CCTC 8 cut(s) 87, 90, 249, 481, 650, 667, 846, 1051
Mph1103I ATGCAT 2 cut(s) 751, 1180
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 7 cut(s) 278, 468, 512, 800, 897, 1359, 1373
MslI CAYNNNNRTG 1 cut(s) 1173
MspA1I CMGCKG 1 cut(s) 1472
MspCI CTTAAG 1 cut(s) 277
MspI CCGG 3 cut(s) 195, 441, 1295
MspR9I CCNGG 2 cut(s) 30, 534
Mva1269I GAATGC 3 cut(s) 23, 937, 1178
MvaI CCWGG 2 cut(s) 30, 534
MvnI CGCG 1 cut(s) 12
NdeII GATC 8 cut(s) 166, 213, 220, 414, 829, 856, 1189, 1474
NlaIII CATG 6 cut(s) 214, 730, 1004, 1187, 1312, 1533
NlaIV GGNNCC 1 cut(s) 972
NmeAIII GCCGAG 1 cut(s) 279
NmuCI GTSAC 2 cut(s) 406, 1214
NsiI ATGCAT 2 cut(s) 751, 1180
NspI RCATGY 1 cut(s) 1533
PagI TCATGA 1 cut(s) 1000
PaqCI CACCTGC 2 cut(s) 916, 1099
PciI ACATGT 1 cut(s) 1529
PcsI WCGNNNNNNNCGW 1 cut(s) 1404
PctI GAATGC 3 cut(s) 23, 937, 1178
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 3 cut(s) 91, 135, 693
PinAI ACCGGT 1 cut(s) 440
PleI GAGTC 4 cut(s) 264, 801, 995, 1426
PmaCI CACGTG 1 cut(s) 1284
PmlI CACGTG 1 cut(s) 1284
PpsI GAGTC 4 cut(s) 264, 801, 995, 1426
Ppu21I YACGTR 1 cut(s) 1284
PscI ACATGT 1 cut(s) 1529
Psp124BI GAGCTC 1 cut(s) 1208
Psp6I CCWGG 2 cut(s) 28, 532
PspCI CACGTG 1 cut(s) 1284
PspGI CCWGG 2 cut(s) 28, 532
PspN4I GGNNCC 1 cut(s) 972
PspPI GGNCC 1 cut(s) 556
PsrI GAACNNNNNNTAC 2 cut(s) 1044, 1076
PstNI CAGNNNCTG 2 cut(s) 365, 838
RsaI GTAC 2 cut(s) 473, 689
RsaNI GTAC 2 cut(s) 472, 688
RseI CAYNNNNRTG 1 cut(s) 1173
SacI GAGCTC 1 cut(s) 1208
SaqAI TTAA 7 cut(s) 278, 468, 512, 800, 897, 1359, 1373
Sau3AI GATC 8 cut(s) 166, 213, 220, 414, 829, 856, 1189, 1474
Sau96I GGNCC 1 cut(s) 556
SchI GAGTC 4 cut(s) 265, 801, 996, 1427
ScrFI CCNGG 2 cut(s) 30, 534
SduI GDGCHC 2 cut(s) 37, 1208
SfaNI GCATC 5 cut(s) 626, 1006, 1084, 1117, 1275
SfcI CTRYAG 2 cut(s) 303, 1343
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 1 cut(s) 1173
SmlI CTYRAG 2 cut(s) 277, 1044
SmoI CTYRAG 2 cut(s) 277, 1044
Sse9I AATT 3 cut(s) 931, 1096, 1356
SspI AATATT 1 cut(s) 1253
SspMI CTAG 7 cut(s) 684, 782, 875, 984, 1140, 1164, 1514
SstI GAGCTC 1 cut(s) 1208
StyD4I CCNGG 2 cut(s) 28, 532
TaaI ACNGT 4 cut(s) 291, 461, 522, 1201
TaiI ACGT 1 cut(s) 1286
TaqI TCGA 2 cut(s) 924, 1398
TasI AATT 3 cut(s) 931, 1096, 1356
TatI WGTACW 1 cut(s) 471
TauI GCSGC 6 cut(s) 103, 106, 109, 112, 500, 788
TfiI GAWTC 3 cut(s) 91, 135, 693
Tru1I TTAA 7 cut(s) 278, 468, 512, 800, 897, 1359, 1373
Tru9I TTAA 7 cut(s) 278, 468, 512, 800, 897, 1359, 1373
TscAI CASTG 5 cut(s) 415, 606, 962, 1077, 1206
TseFI GTSAC 2 cut(s) 406, 1214
TseI GCWGC 5 cut(s) 125, 270, 273, 452, 506
Tsp45I GTSAC 2 cut(s) 406, 1214
TspDTI ATGAA 7 cut(s) 83, 743, 1052, 1200, 1329, 1365, 1524
TspGWI ACGGA 3 cut(s) 368, 598, 705
TspRI CASTG 5 cut(s) 415, 606, 962, 1077, 1206
Vha464I CTTAAG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 556
XceI RCATGY 1 cut(s) 1533
XcmI CCANNNNNNNNNTGG 1 cut(s) 954
XmiI GTMKAC 1 cut(s) 890
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 7 cut(s) 684, 782, 875, 984, 1140, 1164, 1514
Zsp2I ATGCAT 2 cut(s) 751, 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.