Rmu_sc0012751.1_g000001

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012751.1
OG0016173
Physical Location & Seq
Forward (+)
1 .. 7208
7208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012751.1_g000001.1.cds

Sequence Viewer

Length: 1380 bp
ggttcagcgttagagtctgggaagctggattggcacggagacccacagcagcagtcccagcaccatgggacttgctcttcctcttctgcttggccacccctcgatccccaccacaaccctcataacattccccaccatcctattcctcctcaccagctcgactaccatccccaccaccacgatcccaaccacgccactggcttcgccaatccggtgccgttttctgtacgcaaaagggcttggcaacactctaatcaaggacttcctagagatagctttgaaaacccgaatcatgctaagctttatgttgcacaaatttcaagaacagccacggaggacgttattcgctccttgtttggacaatttggagacatagtcgaggttgtaatgttgaaggataagcggactggcttccagcaaggaaattgtttcgtgaagtattcaacattagatgcagcagagagggctatcagagctttaaatagtcagcattattttcctggggaggcaaaccctatcatagtcaaatttgctgacggggaaagggaacgccttgagtctgggaagctggattggcacggagacccacagcagcagtcccagcaccatgggacttgctcttcctcttctgcttggccacccctcgatccccaccacaaccctcataacattccccaccatcctattcctcctcaccagctcgactaccatccccaccaccacgatcccaaccacgccactggcttcgccaatccggtgccgttttctgtacgcaaaagggcttggcaacactctaatcaaggacttcctagagatagctttgaaaacccgaatcatgctaagctttatgttgcacaaatttcaagaacagccacggaggacgttattcgctccttgtttggacaatttggagacatagtcgaggttgtaatgttgaaggataagcggactggcttccagcaaggaaattgtttcgtgaagtattcaacattagatgcagcagagagggctatcagagctttaaatagtcagcattattttcctggggaggcaaaccctatcatagtcaaatttgctgacggggaaagggaacgccttggggtacaagacagattgtatgtttgtggcattaacctggaagcttcaaataaagacattgaggaaatattttcaccttatggtcttgttgaagatatctacattttgaagcacaatcgtggatgcgggtttgttaaattttccagtggagatatggctgtgcaagcaatcaaagctttaaatggaacctttattatgagaggttgtgctcagccattgattgttcgttttgcggatcctaagaaaccaagggaaatagatcgaaggttgttgtcactttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 WW

Protein Analysis

459

Amino Acids

51.78

Weight (kDa)

7.12

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47310
fragaria_vesca FvH4_1g26970
malus_domestica MD09G1285500.v1.1
prunus_persica Prupe.3G008500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487191
rosa_multiflora Rmu_sc0012751.1_g000001 Rmu_ssc0000366.1_g000028
rosa_roxburghii Rroxscaffold_6G00395040
rosa_rugosa Rorug03G0232100 Rorug03G0232200
rosa_samantha Rh3AG280100 Rh3BG316100 Rh3CG314200 Rh3DG311500
rosa_wichuraiana Rw3G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 214, 757
AciI CCGC 4 cut(s) 403, 946, 1224, 1331
AclWI GGATC 6 cut(s) 98, 176, 641, 719, 1328, 1341
AcoI YGGCCR 2 cut(s) 92, 635
AcsI RAATTY 5 cut(s) 315, 527, 858, 1070, 1235
AfaI GTAC 3 cut(s) 228, 771, 1104
AjnI CCWGG 3 cut(s) 499, 1042, 1134
AleI CACNNNNGTG 1 cut(s) 1215
Alw21I GWGCWC 1 cut(s) 1309
Alw26I GTCTC 4 cut(s) 33, 363, 576, 906
AlwI GGATC 6 cut(s) 98, 176, 641, 719, 1328, 1341
AoxI GGCC 2 cut(s) 92, 635
ApeKI GCWGC 4 cut(s) 49, 455, 592, 998
ApoI RAATTY 5 cut(s) 315, 527, 858, 1070, 1235
AsuHPI GGTGA 3 cut(s) 143, 686, 1164
BalI TGGCCA 2 cut(s) 94, 637
BamHI GGATCC 1 cut(s) 1333
BanI GGYRCC 2 cut(s) 214, 757
Bbv12I GWGCWC 1 cut(s) 1309
BbvI GCAGC 4 cut(s) 61, 467, 604, 1010
BccI CCATC 4 cut(s) 144, 174, 687, 717
BceAI ACGGC 2 cut(s) 202, 745
BciT130I CCWGG 3 cut(s) 501, 1044, 1136
BcoDI GTCTC 4 cut(s) 33, 363, 576, 906
BfaI CTAG 2 cut(s) 267, 810
BisI GCNGC 4 cut(s) 50, 456, 593, 999
BlpI GCTNAGC 3 cut(s) 297, 840, 1308
BlsI GCNGC 4 cut(s) 51, 457, 594, 1000
Bme1390I CCNGG 3 cut(s) 501, 1044, 1136
BmiI GGNNCC 4 cut(s) 216, 759, 1285, 1335
BmrFI CCNGG 3 cut(s) 501, 1044, 1136
BmsI GCATC 3 cut(s) 442, 985, 1211
Bpu1102I GCTNAGC 3 cut(s) 297, 840, 1308
BpuEI CTTGAG 1 cut(s) 575
BsaI GGTCTC 2 cut(s) 33, 576
BsaJI CCNNGG 8 cut(s) 64, 330, 500, 607, 873, 1043, 1096, 1346
BsaWI WCCGGW 2 cut(s) 211, 754
BsaXI ACNNNNNCTCC 4 cut(s) 360, 390, 903, 933
Bse1I ACTGG 5 cut(s) 202, 412, 745, 955, 1242
BseBI CCWGG 3 cut(s) 501, 1044, 1136
BseDI CCNNGG 8 cut(s) 64, 330, 500, 607, 873, 1043, 1096, 1346
BseGI GGATG 5 cut(s) 136, 166, 679, 709, 1226
BseMII CTCAG 1 cut(s) 1322
BseNI ACTGG 5 cut(s) 202, 412, 745, 955, 1242
BseRI GAGGAG 2 cut(s) 138, 681
BseXI GCAGC 4 cut(s) 61, 467, 604, 1010
BseYI CCCAGC 2 cut(s) 57, 600
BshFI GGCC 2 cut(s) 94, 637
BshNI GGYRCC 2 cut(s) 214, 757
BsiHKAI GWGCWC 1 cut(s) 1309
BsiSI CCGG 2 cut(s) 212, 755
BslFI GGGAC 4 cut(s) 40, 82, 583, 625
BsmAI GTCTC 4 cut(s) 33, 363, 576, 906
BsmFI GGGAC 4 cut(s) 40, 82, 583, 625
BsnI GGCC 2 cut(s) 94, 637
Bso31I GGTCTC 2 cut(s) 33, 576
Bsp1286I GDGCHC 1 cut(s) 1309
Bsp143I GATC 6 cut(s) 103, 181, 646, 724, 1333, 1357
Bsp1720I GCTNAGC 3 cut(s) 297, 840, 1308
Bsp19I CCATGG 2 cut(s) 64, 607
BspACI CCGC 4 cut(s) 403, 946, 1224, 1331
BspANI GGCC 2 cut(s) 94, 637
BspCNI CTCAG 1 cut(s) 1321
BspLI GGNNCC 4 cut(s) 216, 759, 1285, 1335
BspPI GGATC 6 cut(s) 98, 176, 641, 719, 1328, 1341
BspQI GCTCTTC 2 cut(s) 82, 625
BspT107I GGYRCC 2 cut(s) 214, 757
BspTNI GGTCTC 2 cut(s) 33, 576
BsrI ACTGG 5 cut(s) 202, 412, 745, 955, 1242
BssECI CCNNGG 8 cut(s) 64, 330, 500, 607, 873, 1043, 1096, 1346
BssMI GATC 6 cut(s) 103, 181, 646, 724, 1333, 1357
BssT1I CCWWGG 4 cut(s) 64, 607, 1096, 1346
Bst2UI CCWGG 3 cut(s) 501, 1044, 1136
Bst6I CTCTTC 4 cut(s) 82, 88, 625, 631
BstC8I GCNNGC 1 cut(s) 1263
BstDEI CTNAG 4 cut(s) 297, 840, 1308, 1338
BstDSI CCRYGG 4 cut(s) 64, 330, 607, 873
BstF5I GGATG 5 cut(s) 136, 166, 679, 709, 1226
BstKTI GATC 6 cut(s) 106, 184, 649, 727, 1336, 1360
BstMAI GTCTC 4 cut(s) 33, 363, 576, 906
BstMBI GATC 6 cut(s) 103, 181, 646, 724, 1333, 1357
BstNI CCWGG 3 cut(s) 501, 1044, 1136
BstSCI CCNGG 3 cut(s) 499, 1042, 1134
BstV1I GCAGC 4 cut(s) 61, 467, 604, 1010
BstX2I RGATCY 1 cut(s) 1333
BstXI CCANNNNNNTGG 4 cut(s) 65, 197, 608, 740
BstYI RGATCY 1 cut(s) 1333
BsuRI GGCC 2 cut(s) 94, 637
BtgI CCRYGG 4 cut(s) 64, 330, 607, 873
BtsCI GGATG 5 cut(s) 136, 166, 679, 709, 1226
BtsIMutI CAGTG 3 cut(s) 195, 738, 1249
Cac8I GCNNGC 1 cut(s) 1263
Csp6I GTAC 3 cut(s) 227, 770, 1103
CviAII CATG 4 cut(s) 65, 293, 608, 836
CviQI GTAC 3 cut(s) 227, 770, 1103
DdeI CTNAG 4 cut(s) 297, 840, 1308, 1338
DpnI GATC 6 cut(s) 105, 183, 648, 726, 1335, 1359
DpnII GATC 6 cut(s) 103, 181, 646, 724, 1333, 1357
DraI TTTAAA 3 cut(s) 480, 1023, 1278
EaeI YGGCCR 2 cut(s) 92, 635
Eam1104I CTCTTC 4 cut(s) 82, 88, 625, 631
EarI CTCTTC 4 cut(s) 82, 88, 625, 631
Eco130I CCWWGG 4 cut(s) 64, 607, 1096, 1346
Eco31I GGTCTC 2 cut(s) 33, 576
Eco32I GATATC 1 cut(s) 1195
EcoRII CCWGG 3 cut(s) 499, 1042, 1134
EcoRV GATATC 1 cut(s) 1195
EcoT14I CCWWGG 4 cut(s) 64, 607, 1096, 1346
ErhI CCWWGG 4 cut(s) 64, 607, 1096, 1346
FaeI CATG 4 cut(s) 68, 296, 611, 839
FaqI GGGAC 4 cut(s) 40, 82, 583, 625
FatI CATG 4 cut(s) 64, 292, 607, 835
FauI CCCGC 1 cut(s) 1217
Fnu4HI GCNGC 4 cut(s) 50, 456, 593, 999
FokI GGATG 5 cut(s) 123, 153, 666, 696, 1233
Fsp4HI GCNGC 4 cut(s) 50, 456, 593, 999
FspBI CTAG 2 cut(s) 267, 810
GluI GCNGC 4 cut(s) 50, 456, 593, 999
GsaI CCCAGC 2 cut(s) 61, 604
HaeIII GGCC 2 cut(s) 94, 637
HapII CCGG 2 cut(s) 212, 755
Hin1II CATG 4 cut(s) 68, 296, 611, 839
HindIII AAGCTT 4 cut(s) 299, 842, 1140, 1272
HinfI GANTC 4 cut(s) 14, 289, 557, 832
HpaII CCGG 2 cut(s) 212, 755
HphI GGTGA 3 cut(s) 143, 686, 1164
Hpy188I TCNGA 2 cut(s) 473, 1016
Hpy188III TCNNGA 4 cut(s) 321, 433, 864, 976
HpyAV CCTTC 3 cut(s) 388, 931, 1356
HpyCH4IV ACGT 2 cut(s) 339, 882
HpyCH4V TGCA 5 cut(s) 311, 455, 854, 998, 1261
HpyF3I CTNAG 4 cut(s) 297, 840, 1308, 1338
HpySE526I ACGT 2 cut(s) 339, 882
Hsp92II CATG 4 cut(s) 68, 296, 611, 839
Kzo9I GATC 6 cut(s) 103, 181, 646, 724, 1333, 1357
LguI GCTCTTC 2 cut(s) 82, 625
LmnI GCTCC 2 cut(s) 353, 896
Lsp1109I GCAGC 4 cut(s) 61, 467, 604, 1010
LweI GCATC 3 cut(s) 442, 985, 1211
MaeI CTAG 2 cut(s) 267, 810
MaeII ACGT 2 cut(s) 339, 882
MaeIII GTNAC 1 cut(s) 1371
MalI GATC 6 cut(s) 105, 183, 648, 726, 1335, 1359
MboI GATC 6 cut(s) 103, 181, 646, 724, 1333, 1357
MboII GAAGA 5 cut(s) 69, 75, 612, 618, 1202
MflI RGATCY 1 cut(s) 1333
MhlI GDGCHC 1 cut(s) 1309
MlsI TGGCCA 2 cut(s) 94, 637
MluCI AATT 9 cut(s) 315, 362, 424, 527, 858, 905, 967, 1070, 1235
MluNI TGGCCA 2 cut(s) 94, 637
MlyI GAGTC 2 cut(s) 23, 566
Mox20I TGGCCA 2 cut(s) 94, 637
MscI TGGCCA 2 cut(s) 94, 637
MseI TTAA 6 cut(s) 479, 1022, 1131, 1233, 1277, 1378
MslI CAYNNNNRTG 1 cut(s) 1215
Msp20I TGGCCA 2 cut(s) 94, 637
MspI CCGG 2 cut(s) 212, 755
MspR9I CCNGG 3 cut(s) 501, 1044, 1136
MvaI CCWGG 3 cut(s) 501, 1044, 1136
NcoI CCATGG 2 cut(s) 64, 607
NdeII GATC 6 cut(s) 103, 181, 646, 724, 1333, 1357
NlaIII CATG 4 cut(s) 68, 296, 611, 839
NlaIV GGNNCC 4 cut(s) 216, 759, 1285, 1335
NmuCI GTSAC 1 cut(s) 1371
OliI CACNNNNGTG 1 cut(s) 1215
PciSI GCTCTTC 2 cut(s) 82, 625
PfeI GAWTC 2 cut(s) 289, 832
PflFI GACNNNGTC 2 cut(s) 374, 917
PkrI GCNGC 4 cut(s) 51, 457, 594, 1000
PleI GAGTC 2 cut(s) 22, 565
PpsI GAGTC 2 cut(s) 22, 565
Psp6I CCWGG 3 cut(s) 499, 1042, 1134
PspFI CCCAGC 2 cut(s) 57, 600
PspGI CCWGG 3 cut(s) 499, 1042, 1134
PspN4I GGNNCC 4 cut(s) 216, 759, 1285, 1335
PsuI RGATCY 1 cut(s) 1333
PsyI GACNNNGTC 2 cut(s) 374, 917
RsaI GTAC 3 cut(s) 228, 771, 1104
RsaNI GTAC 3 cut(s) 227, 770, 1103
RseI CAYNNNNRTG 1 cut(s) 1215
SapI GCTCTTC 2 cut(s) 82, 625
SaqAI TTAA 6 cut(s) 479, 1022, 1131, 1233, 1277, 1378
SatI GCNGC 4 cut(s) 50, 456, 593, 999
Sau3AI GATC 6 cut(s) 103, 181, 646, 724, 1333, 1357
SchI GAGTC 2 cut(s) 23, 566
ScrFI CCNGG 3 cut(s) 501, 1044, 1136
SduI GDGCHC 1 cut(s) 1309
SfaNI GCATC 3 cut(s) 442, 985, 1211
SmiMI CAYNNNNRTG 1 cut(s) 1215
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 9 cut(s) 315, 362, 424, 527, 858, 905, 967, 1070, 1235
SsiI CCGC 4 cut(s) 403, 946, 1224, 1331
SspI AATATT 1 cut(s) 1167
SspMI CTAG 2 cut(s) 267, 810
StyD4I CCNGG 3 cut(s) 499, 1042, 1134
StyI CCWWGG 4 cut(s) 64, 607, 1096, 1346
TaiI ACGT 2 cut(s) 342, 885
TaqI TCGA 7 cut(s) 102, 159, 378, 645, 702, 921, 1360
TasI AATT 9 cut(s) 315, 362, 424, 527, 858, 905, 967, 1070, 1235
TfiI GAWTC 2 cut(s) 289, 832
Tru1I TTAA 6 cut(s) 479, 1022, 1131, 1233, 1277, 1378
Tru9I TTAA 6 cut(s) 479, 1022, 1131, 1233, 1277, 1378
TscAI CASTG 3 cut(s) 202, 745, 1249
TseFI GTSAC 1 cut(s) 1371
TseI GCWGC 4 cut(s) 49, 455, 592, 998
Tsp45I GTSAC 1 cut(s) 1371
TspGWI ACGGA 4 cut(s) 51, 347, 594, 890
TspRI CASTG 3 cut(s) 202, 745, 1249
Tth111I GACNNNGTC 2 cut(s) 374, 917
XapI RAATTY 5 cut(s) 315, 527, 858, 1070, 1235
XcmI CCANNNNNNNNNTGG 1 cut(s) 1249
XspI CTAG 2 cut(s) 267, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.