FvH4_1g26970

Flowering time control protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
18759103 .. 18766174
7072 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26970.t1

Sequence Viewer

Length: 1374 bp
ATGGCCCACCATCCTCCTCCTCACCACCTCGACTTCCATCCCCACCACCACCACGATCCCAATGCCGCCTTCCCCAATCCCGTCCCCTTCTCCGTACGCAAAAGGGCTTGGCAACACTCTAATCCTAGAGATAATTTTGAAAACCCCAATCATGCCAAGCTTTATGTGAAACAAGTTTCGCGAACAGCCACGGACGACGTTATTCGGTCCTTGTTTGGACAGTTTGGAGAGATAGTCGAGGTTTATATTTTGAAGGATAAGCTGAATGGCGGCCAACAAGGAAATTGTTTCGTCAAGTATTCAACATTAGATGCAGCAGAGAGGGCTATCCGAGCCTTAAATTGTCAGCATTATTTTCCTGGGGAACCTAGTCCTATCGTAGTAAGATTCGCTGATGGGGAGAGGGAACGCCTCGGGCTGCAAGACAGATTGTATGTTTGTGGCATTCACCCGGATGCTTCAAATGAAGACATTGCGGAAATATTTTCACCTTATGGTCATATTGAAGATATCTACATTATGAAGCCAAATCGTGGAACCGGGTTTGTTAAATTTTCCAGTGGAGTTATGGCTCTGGCAGCAATCAAAGCTTTAAATGGAACCTTTGTTATGAGAGGTTGTGCCCAGCCATTGATTGTTCGTTTTGCGGATCCAAAGAGACCAAGGGAAATAGAGCGAAGGGGTAATTATGTATTTAGCAGTGCACCTGGTGGTCCGTACTCTCACGAACCAGTTAGGCCAGTGTCCGATCACAGTGGTTCCAATGGAGGACAGAATTTTCCAAATGCAGCTTATCCTGTCCAACAAGTTTCACAACCCCCGATTCCCTATTTAGCCAACCAGGAACCACTGGCTTCTACAGTGATGCAACCAACGTTTCCTCCGTTAAGACCACCTTTACAGTTGTCCAGGATGCCTCTACAACAAACGCAGATTACTCCAACAAGTTCTCAGTCTTCTCAAGTGGCAGTCACGGAGATGCAGAAACTGCATCTGCCACAATCACCTGGGCAAATACTTGGGCAGCAACAGGGTTCTCAGACATTTTCTAGCAATTCTACTTCATCAGCGCTGCCGTCAAGTCATGAGATAACTGATCCTCTAGAGTGTGACTGGAGCGAACATACCTGCCCTGATGGATACAAGTATTATTATAATTGTGAAACTTGTGAGAGCAAATGGGACAAACCTGAGGAGTTTGCTTTATTTGAGAAACAGTTGCAGACACAAGCACAGCCGAATAATCCTTCTCACCATCTTCAATCTGTGTCATTGGTTCCTTCTACACAAATAGTATGTCAAAACCAGCAGGAACTCAATCAGGTGCAATTGCAGTCTGAAACAAGTCCTGTTGTTGGCCCAACATGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

50.98

Weight (kDa)

6.3

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 54 - 115 3e-13 RNA recognition motif
RRM_1 PF00076 144 - 204 3e-14 RNA recognition motif
WW PF00397 368 - 397 2.1e-09 WW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016173)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1155
Acc36I ACCTGC 1 cut(s) 1136
AccB7I CCANNNNNTGG 1 cut(s) 533
AccII CGCG 1 cut(s) 181
AciI CCGC 4 cut(s) 66, 270, 476, 647
AclI AACGTT 1 cut(s) 875
AclWI GGATC 4 cut(s) 50, 644, 657, 1091
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 2 cut(s) 551, 775
AdeI CACNNNGTG 1 cut(s) 710
AfaI GTAC 2 cut(s) 96, 719
AfeI AGCGCT 1 cut(s) 1071
AfiI CCNNNNNNNGG 2 cut(s) 533, 1355
AflIII ACRYGT 1 cut(s) 1364
AgsI TTSAA 6 cut(s) 140, 253, 303, 462, 506, 1262
AjnI CCWGG 5 cut(s) 358, 706, 840, 908, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 4 cut(s) 160, 262, 590, 791
AluI AGCT 4 cut(s) 160, 262, 590, 791
Alw21I GWGCWC 1 cut(s) 706
Alw26I GTCTC 1 cut(s) 652
Alw44I GTGCAC 1 cut(s) 702
AlwI GGATC 4 cut(s) 50, 644, 657, 1091
AlwNI CAGNNNCTG 1 cut(s) 988
Ama87I CYCGRG 1 cut(s) 413
Aor51HI AGCGCT 1 cut(s) 1071
AoxI GGCC 4 cut(s) 3, 271, 737, 1357
ApaLI GTGCAC 1 cut(s) 702
ApeKI GCWGC 6 cut(s) 314, 418, 578, 788, 1024, 1072
ApoI RAATTY 2 cut(s) 551, 775
ArsI GACNNNNNNTTYG 2 cut(s) 1282, 1314
AspLEI GCGC 1 cut(s) 1072
AspS9I GGNCC 4 cut(s) 4, 207, 713, 1358
AsuC2I CCSGG 2 cut(s) 452, 541
AsuHPI GGTGA 5 cut(s) 14, 440, 480, 996, 1244
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 2 cut(s) 207, 713
AxyI CCTNAGG 1 cut(s) 1191
BaeGI GKGCMC 2 cut(s) 625, 706
BamHI GGATCC 1 cut(s) 649
BbsI GAAGAC 2 cut(s) 474, 948
Bbv12I GWGCWC 1 cut(s) 706
BbvI GCAGC 6 cut(s) 326, 405, 590, 800, 1036, 1059
BccI CCATC 5 cut(s) 18, 45, 389, 1130, 1263
BceAI ACGGC 1 cut(s) 1060
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 5 cut(s) 360, 708, 842, 910, 1008
BciVI GTATCC 1 cut(s) 1133
BcnI CCSGG 2 cut(s) 452, 541
BcoDI GTCTC 1 cut(s) 652
BfaI CTAG 4 cut(s) 126, 369, 1050, 1103
BfmI CTRYAG 1 cut(s) 858
BfoI RGCGCY 1 cut(s) 1073
BfuAI ACCTGC 1 cut(s) 1136
BfuI GTATCC 1 cut(s) 1133
BisI GCNGC 8 cut(s) 66, 271, 315, 419, 579, 789, 1025, 1073
BlsI GCNGC 8 cut(s) 67, 272, 316, 420, 580, 790, 1026, 1074
Bme1390I CCNGG 7 cut(s) 360, 452, 541, 708, 842, 910, 1008
Bme18I GGWCC 2 cut(s) 207, 713
BmeT110I CYCGRG 1 cut(s) 413
BmgT120I GGNCC 4 cut(s) 4, 207, 713, 1358
BmiI GGNNCC 7 cut(s) 366, 538, 601, 651, 760, 846, 1278
BmrFI CCNGG 7 cut(s) 360, 452, 541, 708, 842, 910, 1008
BmsI GCATC 6 cut(s) 301, 445, 855, 903, 969, 1000
BpiI GAAGAC 2 cut(s) 474, 948
BpmI CTGGAG 1 cut(s) 1135
BpuEI CTTGAG 1 cut(s) 945
BpuMI CCSGG 2 cut(s) 452, 541
BsaI GGTCTC 1 cut(s) 652
BsaJI CCNNGG 5 cut(s) 189, 359, 412, 662, 1007
BsaXI ACNNNNNCTCC 4 cut(s) 219, 249, 865, 895
Bsc4I CCNNNNNNNGG 2 cut(s) 533, 1355
Bse1I ACTGG 5 cut(s) 558, 731, 740, 855, 1118
Bse21I CCTNAGG 1 cut(s) 1191
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 5 cut(s) 360, 708, 842, 910, 1008
BseDI CCNNGG 5 cut(s) 189, 359, 412, 662, 1007
BseGI GGATG 4 cut(s) 10, 37, 460, 918
BseLI CCNNNNNNNGG 2 cut(s) 533, 1355
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 3 cut(s) 965, 1052, 1182
BseNI ACTGG 5 cut(s) 558, 731, 740, 855, 1118
BseRI GAGGAG 3 cut(s) 6, 9, 1208
BseSI GKGCMC 2 cut(s) 625, 706
BseXI GCAGC 6 cut(s) 326, 405, 590, 800, 1036, 1059
BseYI CCCAGC 1 cut(s) 624
Bsh1236I CGCG 1 cut(s) 181
BshFI GGCC 4 cut(s) 5, 273, 739, 1359
BsiHKAI GWGCWC 1 cut(s) 706
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 2 cut(s) 452, 540
BsiWI CGTACG 1 cut(s) 94
BslFI GGGAC 2 cut(s) 68, 1196
BslI CCNNNNNNNGG 2 cut(s) 533, 1355
BsmAI GTCTC 1 cut(s) 652
BsmFI GGGAC 2 cut(s) 68, 1196
BsmI GAATGC 1 cut(s) 444
BsnI GGCC 4 cut(s) 5, 273, 739, 1359
Bso31I GGTCTC 1 cut(s) 652
BsoBI CYCGRG 1 cut(s) 413
Bsp1286I GDGCHC 2 cut(s) 625, 706
Bsp143I GATC 4 cut(s) 55, 649, 748, 1096
Bsp68I TCGCGA 1 cut(s) 181
BspACI CCGC 4 cut(s) 66, 270, 476, 647
BspANI GGCC 4 cut(s) 5, 273, 739, 1359
BspCNI CTCAG 3 cut(s) 964, 1051, 1183
BspFNI CGCG 1 cut(s) 181
BspHI TCATGA 1 cut(s) 1084
BspLI GGNNCC 7 cut(s) 366, 538, 601, 651, 760, 846, 1278
BspMI ACCTGC 1 cut(s) 1136
BspPI GGATC 4 cut(s) 50, 644, 657, 1091
BspTNI GGTCTC 1 cut(s) 652
BsrDI GCAATG 1 cut(s) 471
BsrI ACTGG 5 cut(s) 558, 731, 740, 855, 1118
BssECI CCNNGG 5 cut(s) 189, 359, 412, 662, 1007
BssMI GATC 4 cut(s) 55, 649, 748, 1096
BssT1I CCWWGG 1 cut(s) 662
Bst2UI CCWGG 5 cut(s) 360, 708, 842, 910, 1008
Bst4CI ACNGT 5 cut(s) 222, 755, 862, 903, 1218
BstAPI GCANNNNNTGC 1 cut(s) 988
BstDEI CTNAG 3 cut(s) 951, 1038, 1191
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 4 cut(s) 10, 37, 460, 918
BstFNI CGCG 1 cut(s) 181
BstH2I RGCGCY 1 cut(s) 1073
BstHHI GCGC 1 cut(s) 1072
BstKTI GATC 4 cut(s) 58, 652, 751, 1099
BstMAI GTCTC 1 cut(s) 652
BstMBI GATC 4 cut(s) 55, 649, 748, 1096
BstMWI GCNNNNNNNGC 5 cut(s) 323, 332, 578, 587, 988
BstNI CCWGG 5 cut(s) 360, 708, 842, 910, 1008
BstNSI RCATGY 1 cut(s) 1368
BstSCI CCNGG 7 cut(s) 358, 450, 539, 706, 840, 908, 1006
BstSFI CTRYAG 1 cut(s) 858
BstSLI GKGCMC 2 cut(s) 625, 706
BstUI CGCG 1 cut(s) 181
BstV1I GCAGC 6 cut(s) 326, 405, 590, 800, 1036, 1059
BstV2I GAAGAC 2 cut(s) 474, 948
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
Bsu36I CCTNAGG 1 cut(s) 1191
BsuI GTATCC 1 cut(s) 1133
BsuRI GGCC 4 cut(s) 5, 273, 739, 1359
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 4 cut(s) 10, 37, 460, 918
BtsI GCAGTG 1 cut(s) 706
BtsIMutI CAGTG 6 cut(s) 565, 706, 747, 760, 848, 867
BtuMI TCGCGA 1 cut(s) 181
BveI ACCTGC 1 cut(s) 1136
CaiI CAGNNNCTG 1 cut(s) 988
CciI TCATGA 1 cut(s) 1084
CfoI GCGC 1 cut(s) 1072
Cfr13I GGNCC 4 cut(s) 4, 207, 713, 1358
CsiI ACCWGGT 1 cut(s) 706
Csp6I GTAC 2 cut(s) 95, 718
CviAII CATG 3 cut(s) 152, 1085, 1365
CviQI GTAC 2 cut(s) 95, 718
DdeI CTNAG 3 cut(s) 951, 1038, 1191
DpnI GATC 4 cut(s) 57, 651, 750, 1098
DpnII GATC 4 cut(s) 55, 649, 748, 1096
DraI TTTAAA 1 cut(s) 594
DraIII CACNNNGTG 1 cut(s) 710
EaeI YGGCCR 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 662
Eco31I GGTCTC 1 cut(s) 652
Eco32I GATATC 1 cut(s) 511
Eco47I GGWCC 2 cut(s) 207, 713
Eco47III AGCGCT 1 cut(s) 1071
Eco81I CCTNAGG 1 cut(s) 1191
Eco88I CYCGRG 1 cut(s) 413
EcoRII CCWGG 5 cut(s) 358, 706, 840, 908, 1006
EcoRV GATATC 1 cut(s) 511
EcoT14I CCWWGG 1 cut(s) 662
ErhI CCWWGG 1 cut(s) 662
FaeI CATG 3 cut(s) 155, 1088, 1368
FalI AAGNNNNNCTT 2 cut(s) 880, 912
FaqI GGGAC 2 cut(s) 68, 1196
FatI CATG 3 cut(s) 151, 1084, 1364
Fnu4HI GCNGC 8 cut(s) 66, 271, 315, 419, 579, 789, 1025, 1073
FokI GGATG 3 cut(s) 24, 467, 925
Fsp4HI GCNGC 8 cut(s) 66, 271, 315, 419, 579, 789, 1025, 1073
FspBI CTAG 4 cut(s) 126, 369, 1050, 1103
GlaI GCGC 1 cut(s) 1071
GluI GCNGC 8 cut(s) 66, 271, 315, 419, 579, 789, 1025, 1073
GsaI CCCAGC 1 cut(s) 628
GsuI CTGGAG 1 cut(s) 1135
HaeII RGCGCY 1 cut(s) 1073
HaeIII GGCC 4 cut(s) 5, 273, 739, 1359
HapII CCGG 2 cut(s) 452, 540
HhaI GCGC 1 cut(s) 1072
Hin1II CATG 3 cut(s) 155, 1088, 1368
Hin6I GCGC 1 cut(s) 1070
HinP1I GCGC 1 cut(s) 1070
HindIII AAGCTT 2 cut(s) 158, 588
HinfI GANTC 2 cut(s) 387, 823
HpaII CCGG 2 cut(s) 452, 540
HphI GGTGA 5 cut(s) 14, 440, 480, 996, 1244
Hpy166II GTNNAC 1 cut(s) 704
Hpy188I TCNGA 4 cut(s) 332, 748, 1041, 1339
Hpy188III TCNNGA 4 cut(s) 180, 725, 1085, 1103
Hpy8I GTNNAC 1 cut(s) 704
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 6 cut(s) 79, 97, 247, 672, 1257, 1290
HpyCH4III ACNGT 5 cut(s) 222, 755, 862, 903, 1218
HpyCH4IV ACGT 2 cut(s) 198, 875
HpyF10VI GCNNNNNNNGC 5 cut(s) 323, 332, 578, 587, 988
HpyF3I CTNAG 3 cut(s) 951, 1038, 1191
HpySE526I ACGT 2 cut(s) 198, 875
Hsp92II CATG 3 cut(s) 155, 1088, 1368
HspAI GCGC 1 cut(s) 1070
Kzo9I GATC 4 cut(s) 55, 649, 748, 1096
LmnI GCTCC 1 cut(s) 1116
Lsp1109I GCAGC 6 cut(s) 326, 405, 590, 800, 1036, 1059
LweI GCATC 6 cut(s) 301, 445, 855, 903, 969, 1000
MabI ACCWGGT 1 cut(s) 706
MaeI CTAG 4 cut(s) 126, 369, 1050, 1103
MaeII ACGT 2 cut(s) 198, 875
MaeIII GTNAC 2 cut(s) 970, 1109
MalI GATC 4 cut(s) 57, 651, 750, 1098
MboI GATC 4 cut(s) 55, 649, 748, 1096
MboII GAAGA 4 cut(s) 479, 518, 948, 1250
MfeI CAATTG 1 cut(s) 1328
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 2 cut(s) 625, 706
MluCI AATT 9 cut(s) 133, 283, 340, 551, 685, 775, 1054, 1156, 1328
MmeI TCCRAC 2 cut(s) 826, 965
MseI TTAA 4 cut(s) 338, 549, 593, 887
MslI CAYNNNNRTG 3 cut(s) 453, 977, 1369
MspI CCGG 2 cut(s) 452, 540
MspR9I CCNGG 7 cut(s) 360, 452, 541, 708, 842, 910, 1008
MunI CAATTG 1 cut(s) 1328
Mva1269I GAATGC 1 cut(s) 444
MvaI CCWGG 5 cut(s) 360, 708, 842, 910, 1008
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 5 cut(s) 323, 332, 578, 587, 988
NciI CCSGG 2 cut(s) 452, 541
NdeII GATC 4 cut(s) 55, 649, 748, 1096
NlaIII CATG 3 cut(s) 155, 1088, 1368
NlaIV GGNNCC 7 cut(s) 366, 538, 601, 651, 760, 846, 1278
NmuCI GTSAC 2 cut(s) 970, 1109
NruI TCGCGA 1 cut(s) 181
NspI RCATGY 1 cut(s) 1368
PagI TCATGA 1 cut(s) 1084
PciI ACATGT 1 cut(s) 1364
PcsI WCGNNNNNNNCGW 1 cut(s) 881
PctI GAATGC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 387, 823
Pfl23II CGTACG 1 cut(s) 94
PflMI CCANNNNNTGG 1 cut(s) 533
PfoI TCCNGGA 1 cut(s) 908
PkrI GCNGC 8 cut(s) 67, 272, 316, 420, 580, 790, 1026, 1074
PscI ACATGT 1 cut(s) 1364
PsiI TTATAA 1 cut(s) 1155
Psp1406I AACGTT 1 cut(s) 875
Psp6I CCWGG 5 cut(s) 358, 706, 840, 908, 1006
PspFI CCCAGC 1 cut(s) 624
PspGI CCWGG 5 cut(s) 358, 706, 840, 908, 1006
PspLI CGTACG 1 cut(s) 94
PspN4I GGNNCC 7 cut(s) 366, 538, 601, 651, 760, 846, 1278
PspPI GGNCC 4 cut(s) 4, 207, 713, 1358
PstNI CAGNNNCTG 1 cut(s) 988
PsuI RGATCY 1 cut(s) 649
RruI TCGCGA 1 cut(s) 181
RsaI GTAC 2 cut(s) 96, 719
RsaNI GTAC 2 cut(s) 95, 718
RseI CAYNNNNRTG 3 cut(s) 453, 977, 1369
SaqAI TTAA 4 cut(s) 338, 549, 593, 887
SatI GCNGC 8 cut(s) 66, 271, 315, 419, 579, 789, 1025, 1073
Sau3AI GATC 4 cut(s) 55, 649, 748, 1096
Sau96I GGNCC 4 cut(s) 4, 207, 713, 1358
ScrFI CCNGG 7 cut(s) 360, 452, 541, 708, 842, 910, 1008
SduI GDGCHC 2 cut(s) 625, 706
SexAI ACCWGGT 1 cut(s) 706
SfaNI GCATC 6 cut(s) 301, 445, 855, 903, 969, 1000
SfcI CTRYAG 1 cut(s) 858
SinI GGWCC 2 cut(s) 207, 713
SmiMI CAYNNNNRTG 3 cut(s) 453, 977, 1369
SmlI CTYRAG 1 cut(s) 960
SmoI CTYRAG 1 cut(s) 960
Sse9I AATT 9 cut(s) 133, 283, 340, 551, 685, 775, 1054, 1156, 1328
SsiI CCGC 4 cut(s) 66, 270, 476, 647
SspI AATATT 1 cut(s) 483
SspMI CTAG 4 cut(s) 126, 369, 1050, 1103
StyD4I CCNGG 7 cut(s) 358, 450, 539, 706, 840, 908, 1006
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 5 cut(s) 222, 755, 862, 903, 1218
TaiI ACGT 2 cut(s) 201, 878
TaqI TCGA 2 cut(s) 30, 237
TaqII GACCGA 1 cut(s) 195
TasI AATT 9 cut(s) 133, 283, 340, 551, 685, 775, 1054, 1156, 1328
TauI GCSGC 2 cut(s) 68, 273
TfiI GAWTC 2 cut(s) 387, 823
Tru1I TTAA 4 cut(s) 338, 549, 593, 887
Tru9I TTAA 4 cut(s) 338, 549, 593, 887
TscAI CASTG 6 cut(s) 565, 706, 747, 760, 855, 867
TseFI GTSAC 2 cut(s) 970, 1109
TseI GCWGC 6 cut(s) 314, 418, 578, 788, 1024, 1072
Tsp45I GTSAC 2 cut(s) 970, 1109
TspDTI ATGAA 3 cut(s) 480, 536, 1053
TspGWI ACGGA 5 cut(s) 82, 206, 705, 873, 989
TspRI CASTG 6 cut(s) 565, 706, 747, 760, 855, 867
Van91I CCANNNNNTGG 1 cut(s) 533
VneI GTGCAC 1 cut(s) 702
VpaK11BI GGWCC 2 cut(s) 207, 713
XapI RAATTY 2 cut(s) 551, 775
XbaI TCTAGA 1 cut(s) 1102
XceI RCATGY 1 cut(s) 1368
XcmI CCANNNNNNNNNTGG 1 cut(s) 565
XspI CTAG 4 cut(s) 126, 369, 1050, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.