Rh3DG311500

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0016173
Physical Location & Seq
Forward (+)
33444431 .. 33458826
14396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG311500.1

Sequence Viewer

Length: 1857 bp
ATGAAGGAGCTGCTCATGCTTCAGAACAAGTTGACCGGCAAAATTTTGGCAAACTACGCGAAGTGCACGACGCTAACCCGGTTCAGGGTCAACAACTCCCTCTCAGGTTTCAGCTCTGAATTTTCAACTCAGGACTCGAACTCGGAGCCGAAACAGGTCGAGGACGACGCTGGAGGAGGAAAGAGAGCGGCGGTCATGACTTTCAACAAGCCGAGAGAATCGGAGACGGAAGACGACGGCGACCGGTCCTCGTTGCCTCAATCGGAGCTGGTGGGATCGCCGGTTGCTTGGGCCTCGCCGCTAAAGGGTTCAGCGTTAGAGTCTGGGAAGCTGGATTGGCACGGAGACCCACAGCAGCAGTCCCAGCACCATGGGACTTGCTCTTCCTCTTCTGCTTGGCCACCCCTCGATCCCCACCACAACCCTCATAACATTCCCCACCATCCTATTCCTCCTCACCAGCTCGACTACCATCCCCACCACCACGATCCCAACCACGCCACTGGCTTCGCCAATCCGGTGCCGTTTTCTGTACGCAAAAGGGCTTGGCAACACTCTAATCAAGGTCTTCCTAGAGATAGCTTTGAAAACCCGAATCATGCTAAGCTTTATGTTGCACAAATTTCAAGAACAGCCACGGAGGACGTTATTCGCTCCTTGTTTGGACAATTTGGAGACATAGTCGAGGTTGTAATGTTGAAGGATAAGCGGACTGGCTTCCAGCAAGGAAATTGTTTCGTGAAGTATTCAACATTAGATGCAGCAGAGAGGGCTATCAGAGCTTTAAATAGTCAGCATTATTTTCCTGGGGAGGCAAACCCTATCATAGTCAAATTTGCTGACGGGGAAAGGGAACGCCTTGGGGTACAAGACAGATTGTATGTTTGTGGCATTAACCTGGAAGCTTCAAATAAAGACATTGAGGAAATATTTTCACCTTATGGTCTTGTTGAAGATATCTACATTTTGAAGCACAATCGCGGATGCGGGTTTGTTAAATTTTCCAGTGGAGATATGGCTGTGCAAGCAATCAAAGCTTTAAATGGAACCTTTATTATGAGAGGTTGTGCTCAGCCATTGATTGTTCGTTTTGCGGATCCTAAGAAACCAAGGGAAATAGATCGAAGGGGTAATTATGTATTTAGCAGTGCACCTGGTGGTCCGTTCTCTCACGAACCAGTTAGGGTAGTGTCTGATCATAGTGATTCCATTGGAGGACAAAATTTTCTAAATGCATCTTATCCTGTCCAACAAATTTCACAACCCCCTATTCCCTATTTGGCAAACCAGGAACCACAGGCTTCTACAGTGATGCAACCAACGTTTCCTCCATTAAGACCACCTTTACAGTTGTGCAGGATGCCTATACAACAAACACAGAATACACAAAGAAGTTCTCAGTCTTCTCAAGTAGCAGTCACGGAGATGCAGAAACAGCATCTGACACAATCATCTGGGCAAATTCCGGGGCAGCAACAGAGTTCTCAGACATTTTCTAGCAATTCTACTTCAGCTGCGCTGCCTTCAAGTCATGAGATAACTGCTCCTCTAGAGTGTGACTGGAGTGAACATACCTGCCCTGATGGATACAAGTATTATTATAATTGTGAAACTTGTGAGAGCAGATGGGACAAACCTGAGGAGTTTGCTTCATTTGAGCAACAATTGCAGATGCAAACACAGCCGAATAATCCTTCTCATCATCTTCAATCCGTGTCATTGGTTCCTTCTACGCAAATAGTTTGTCAAAATCAGCAGGTACATAGTCAGACACATGGCTTCCATCAGATACTCCAACTTCAGAAACCATACTTGTCTGCATTGTTTGCCTCATTTCAGCATATTATGATTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 WW

Protein Analysis

618

Amino Acids

69.02

Weight (kDa)

6.42

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 203 - 267 2.3e-14 RNA recognition motif
RRM_1 PF00076 293 - 353 1.5e-12 RNA recognition motif
WW PF00397 517 - 546 1.4e-09 WW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47310
fragaria_vesca FvH4_1g26970
malus_domestica MD09G1285500.v1.1
prunus_persica Prupe.3G008500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487191
rosa_multiflora Rmu_sc0012751.1_g000001 Rmu_ssc0000366.1_g000028
rosa_roxburghii Rroxscaffold_6G00395040
rosa_rugosa Rorug03G0232100 Rorug03G0232200
rosa_samantha Rh3AG280100 Rh3BG316100 Rh3CG314200 Rh3DG311500
rosa_wichuraiana Rw3G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1602, 1855
Acc36I ACCTGC 2 cut(s) 1583, 1747
AccB1I GGYRCC 1 cut(s) 520
AccBSI CCGCTC 1 cut(s) 188
AccII CGCG 2 cut(s) 59, 981
AciI CCGC 7 cut(s) 188, 191, 299, 709, 981, 987, 1094
AclI AACGTT 1 cut(s) 1322
AclWI GGATC 5 cut(s) 283, 404, 482, 1091, 1104
AcoI YGGCCR 1 cut(s) 398
AcsI RAATTY 8 cut(s) 42, 119, 621, 833, 998, 1222, 1254, 1461
AcuI CTGAAG 3 cut(s) 5, 1494, 1784
AdeI CACNNNGTG 1 cut(s) 1157
AfaI GTAC 3 cut(s) 534, 867, 1761
AfiI CCNNNNNNNGG 3 cut(s) 84, 85, 305
AgeI ACCGGT 1 cut(s) 243
AjnI CCWGG 4 cut(s) 805, 897, 1153, 1287
Alw21I GWGCWC 3 cut(s) 68, 1072, 1153
Alw26I GTCTC 3 cut(s) 218, 339, 669
Alw44I GTGCAC 2 cut(s) 64, 1149
AlwI GGATC 5 cut(s) 283, 404, 482, 1091, 1104
AlwNI CAGNNNCTG 1 cut(s) 1441
AoxI GGCC 2 cut(s) 291, 398
ApaLI GTGCAC 2 cut(s) 64, 1149
ApeKI GCWGC 6 cut(s) 10, 355, 761, 1471, 1514, 1519
ApoI RAATTY 8 cut(s) 42, 119, 621, 833, 998, 1222, 1254, 1461
ArsI GACNNNNNNTTYG 2 cut(s) 1729, 1761
AsiGI ACCGGT 1 cut(s) 243
AspLEI GCGC 1 cut(s) 1519
AspS9I GGNCC 3 cut(s) 246, 291, 1160
AsuC2I CCSGG 2 cut(s) 79, 1467
AsuHPI GGTGA 2 cut(s) 449, 927
AvaII GGWCC 2 cut(s) 246, 1160
AxyI CCTNAGG 1 cut(s) 1638
BaeGI GKGCMC 2 cut(s) 68, 1153
BalI TGGCCA 1 cut(s) 400
BamHI GGATCC 1 cut(s) 1096
BanI GGYRCC 1 cut(s) 520
BbsI GAAGAC 3 cut(s) 237, 560, 1395
Bbv12I GWGCWC 3 cut(s) 68, 1072, 1153
BbvI GCAGC 5 cut(s) 367, 773, 1483, 1501, 1506
BccI CCATC 5 cut(s) 450, 480, 1577, 1620, 1791
BceAI ACGGC 2 cut(s) 253, 508
BciT130I CCWGG 4 cut(s) 807, 899, 1155, 1289
BciVI GTATCC 1 cut(s) 1580
BclI TGATCA 1 cut(s) 1195
BcnI CCSGG 2 cut(s) 79, 1467
BcoDI GTCTC 3 cut(s) 218, 339, 669
BfaI CTAG 3 cut(s) 573, 1497, 1550
BfmI CTRYAG 1 cut(s) 1305
BfuAI ACCTGC 2 cut(s) 1583, 1747
BfuI GTATCC 1 cut(s) 1580
BisI GCNGC 8 cut(s) 11, 189, 299, 356, 762, 1472, 1515, 1520
BlpI GCTNAGC 2 cut(s) 603, 1071
BlsI GCNGC 8 cut(s) 12, 190, 300, 357, 763, 1473, 1516, 1521
Bme1390I CCNGG 6 cut(s) 79, 807, 899, 1155, 1289, 1467
Bme18I GGWCC 2 cut(s) 246, 1160
BmgT120I GGNCC 3 cut(s) 246, 291, 1160
BmiI GGNNCC 6 cut(s) 147, 522, 1048, 1098, 1293, 1725
BmrFI CCNGG 6 cut(s) 79, 807, 899, 1155, 1289, 1467
BmsI GCATC 8 cut(s) 748, 974, 1244, 1302, 1350, 1416, 1447, 1662
BpiI GAAGAC 3 cut(s) 237, 560, 1395
BpmI CTGGAG 2 cut(s) 192, 1582
Bpu1102I GCTNAGC 2 cut(s) 603, 1071
BpuEI CTTGAG 1 cut(s) 1392
BpuMI CCSGG 2 cut(s) 79, 1467
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 6 cut(s) 370, 636, 806, 859, 1109, 1466
BsaWI WCCGGW 2 cut(s) 243, 517
BsaXI ACNNNNNCTCC 4 cut(s) 666, 696, 1312, 1342
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 85, 305
Bse118I RCCGGY 3 cut(s) 35, 243, 280
Bse1I ACTGG 5 cut(s) 508, 718, 1005, 1178, 1565
Bse21I CCTNAGG 1 cut(s) 1638
BseBI CCWGG 4 cut(s) 807, 899, 1155, 1289
BseDI CCNNGG 6 cut(s) 370, 636, 806, 859, 1109, 1466
BseGI GGATG 4 cut(s) 442, 472, 989, 1365
BseLI CCNNNNNNNGG 3 cut(s) 84, 85, 305
BseMII CTCAG 6 cut(s) 117, 143, 1085, 1412, 1499, 1629
BseNI ACTGG 5 cut(s) 508, 718, 1005, 1178, 1565
BseRI GAGGAG 4 cut(s) 189, 444, 1536, 1655
BseSI GKGCMC 2 cut(s) 68, 1153
BseXI GCAGC 5 cut(s) 367, 773, 1483, 1501, 1506
BseYI CCCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 1375
Bsh1236I CGCG 2 cut(s) 59, 981
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 2 cut(s) 293, 400
BshNI GGYRCC 1 cut(s) 520
BshTI ACCGGT 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 244
BsiHKAI GWGCWC 3 cut(s) 68, 1072, 1153
BsiSI CCGG 6 cut(s) 36, 79, 244, 281, 518, 1466
BslFI GGGAC 3 cut(s) 346, 388, 1643
BslI CCNNNNNNNGG 3 cut(s) 84, 85, 305
BsmAI GTCTC 3 cut(s) 218, 339, 669
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 3 cut(s) 346, 388, 1643
BsnI GGCC 2 cut(s) 293, 400
Bso31I GGTCTC 1 cut(s) 339
Bsp1286I GDGCHC 3 cut(s) 68, 1072, 1153
Bsp143I GATC 6 cut(s) 275, 409, 487, 1096, 1120, 1195
Bsp1720I GCTNAGC 2 cut(s) 603, 1071
Bsp19I CCATGG 1 cut(s) 370
BspACI CCGC 7 cut(s) 188, 191, 299, 709, 981, 987, 1094
BspANI GGCC 2 cut(s) 293, 400
BspCNI CTCAG 6 cut(s) 116, 142, 1084, 1411, 1498, 1630
BspFNI CGCG 2 cut(s) 59, 981
BspHI TCATGA 2 cut(s) 195, 1531
BspLI GGNNCC 6 cut(s) 147, 522, 1048, 1098, 1293, 1725
BspMI ACCTGC 2 cut(s) 1583, 1747
BspPI GGATC 5 cut(s) 283, 404, 482, 1091, 1104
BspQI GCTCTTC 1 cut(s) 388
BspT107I GGYRCC 1 cut(s) 520
BspTNI GGTCTC 1 cut(s) 339
BsrBI CCGCTC 1 cut(s) 188
BsrFI RCCGGY 3 cut(s) 35, 243, 280
BsrI ACTGG 5 cut(s) 508, 718, 1005, 1178, 1565
BssAI RCCGGY 3 cut(s) 35, 243, 280
BssECI CCNNGG 6 cut(s) 370, 636, 806, 859, 1109, 1466
BssMI GATC 6 cut(s) 275, 409, 487, 1096, 1120, 1195
BssT1I CCWWGG 3 cut(s) 370, 859, 1109
Bst2UI CCWGG 4 cut(s) 807, 899, 1155, 1289
Bst4CI ACNGT 2 cut(s) 1309, 1350
Bst6I CTCTTC 2 cut(s) 388, 394
BstAPI GCANNNNNTGC 2 cut(s) 1666, 1826
BstC8I GCNNGC 1 cut(s) 1026
BstDEI CTNAG 8 cut(s) 103, 129, 603, 1071, 1101, 1398, 1485, 1638
BstDSI CCRYGG 2 cut(s) 370, 636
BstF5I GGATG 4 cut(s) 442, 472, 989, 1365
BstFNI CGCG 2 cut(s) 59, 981
BstHHI GCGC 1 cut(s) 1519
BstKTI GATC 6 cut(s) 278, 412, 490, 1099, 1123, 1198
BstMAI GTCTC 3 cut(s) 218, 339, 669
BstMBI GATC 6 cut(s) 275, 409, 487, 1096, 1120, 1195
BstMCI CGRYCG 1 cut(s) 244
BstNI CCWGG 4 cut(s) 807, 899, 1155, 1289
BstSCI CCNGG 6 cut(s) 77, 805, 897, 1153, 1287, 1465
BstSFI CTRYAG 1 cut(s) 1305
BstSLI GKGCMC 2 cut(s) 68, 1153
BstUI CGCG 2 cut(s) 59, 981
BstV1I GCAGC 5 cut(s) 367, 773, 1483, 1501, 1506
BstV2I GAAGAC 3 cut(s) 237, 560, 1395
BstX2I RGATCY 1 cut(s) 1096
BstXI CCANNNNNNTGG 2 cut(s) 371, 503
BstYI RGATCY 1 cut(s) 1096
Bsu36I CCTNAGG 1 cut(s) 1638
BsuI GTATCC 1 cut(s) 1580
BsuRI GGCC 2 cut(s) 293, 400
BtgI CCRYGG 2 cut(s) 370, 636
BtsCI GGATG 4 cut(s) 442, 472, 989, 1365
BtsI GCAGTG 1 cut(s) 1153
BtsIMutI CAGTG 4 cut(s) 501, 1012, 1153, 1314
BveI ACCTGC 2 cut(s) 1583, 1747
Cac8I GCNNGC 1 cut(s) 1026
CaiI CAGNNNCTG 1 cut(s) 1441
CciI TCATGA 2 cut(s) 195, 1531
CfoI GCGC 1 cut(s) 1519
Cfr10I RCCGGY 3 cut(s) 35, 243, 280
Cfr13I GGNCC 3 cut(s) 246, 291, 1160
CseI GACGC 2 cut(s) 79, 176
CsiI ACCWGGT 1 cut(s) 1153
Csp6I GTAC 3 cut(s) 533, 866, 1760
CspAI ACCGGT 1 cut(s) 243
CviAII CATG 6 cut(s) 16, 196, 371, 599, 1532, 1775
CviQI GTAC 3 cut(s) 533, 866, 1760
DdeI CTNAG 8 cut(s) 103, 129, 603, 1071, 1101, 1398, 1485, 1638
DpnI GATC 6 cut(s) 277, 411, 489, 1098, 1122, 1197
DpnII GATC 6 cut(s) 275, 409, 487, 1096, 1120, 1195
DraI TTTAAA 2 cut(s) 786, 1041
DraIII CACNNNGTG 1 cut(s) 1157
EaeI YGGCCR 1 cut(s) 398
Eam1104I CTCTTC 2 cut(s) 388, 394
EarI CTCTTC 2 cut(s) 388, 394
Eco130I CCWWGG 3 cut(s) 370, 859, 1109
Eco31I GGTCTC 1 cut(s) 339
Eco32I GATATC 1 cut(s) 958
Eco47I GGWCC 2 cut(s) 246, 1160
Eco57I CTGAAG 3 cut(s) 5, 1494, 1784
Eco81I CCTNAGG 1 cut(s) 1638
EcoRII CCWGG 4 cut(s) 805, 897, 1153, 1287
EcoRV GATATC 1 cut(s) 958
EcoT14I CCWWGG 3 cut(s) 370, 859, 1109
EcoT22I ATGCAT 1 cut(s) 1237
ErhI CCWWGG 3 cut(s) 370, 859, 1109
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 6 cut(s) 19, 199, 374, 602, 1535, 1778
FalI AAGNNNNNCTT 2 cut(s) 1327, 1359
FaqI GGGAC 3 cut(s) 346, 388, 1643
FatI CATG 6 cut(s) 15, 195, 370, 598, 1531, 1774
FauI CCCGC 1 cut(s) 980
FbaI TGATCA 1 cut(s) 1195
Fnu4HI GCNGC 8 cut(s) 11, 189, 299, 356, 762, 1472, 1515, 1520
FokI GGATG 4 cut(s) 429, 459, 996, 1372
Fsp4HI GCNGC 8 cut(s) 11, 189, 299, 356, 762, 1472, 1515, 1520
FspBI CTAG 3 cut(s) 573, 1497, 1550
GlaI GCGC 1 cut(s) 1518
GluI GCNGC 8 cut(s) 11, 189, 299, 356, 762, 1472, 1515, 1520
GsaI CCCAGC 1 cut(s) 367
GsuI CTGGAG 2 cut(s) 192, 1582
HaeIII GGCC 2 cut(s) 293, 400
HapII CCGG 6 cut(s) 36, 79, 244, 281, 518, 1466
HgaI GACGC 2 cut(s) 79, 176
HhaI GCGC 1 cut(s) 1519
Hin1II CATG 6 cut(s) 19, 199, 374, 602, 1535, 1778
Hin6I GCGC 1 cut(s) 1517
HinP1I GCGC 1 cut(s) 1517
HincII GTYRAC 2 cut(s) 33, 91
HindII GTYRAC 2 cut(s) 33, 91
HindIII AAGCTT 3 cut(s) 605, 903, 1035
HinfI GANTC 5 cut(s) 134, 218, 320, 595, 1205
HpaII CCGG 6 cut(s) 36, 79, 244, 281, 518, 1466
HphI GGTGA 2 cut(s) 449, 927
Hpy166II GTNNAC 5 cut(s) 33, 66, 91, 1151, 1568
Hpy188III TCNNGA 7 cut(s) 131, 196, 627, 739, 1172, 1532, 1550
Hpy8I GTNNAC 5 cut(s) 33, 66, 91, 1151, 1568
Hpy99I CGWCG 3 cut(s) 73, 170, 239
HpyAV CCTTC 5 cut(s) 694, 1119, 1533, 1704, 1737
HpyCH4III ACNGT 2 cut(s) 1309, 1350
HpyCH4IV ACGT 2 cut(s) 645, 1322
HpyF3I CTNAG 8 cut(s) 103, 129, 603, 1071, 1101, 1398, 1485, 1638
HpySE526I ACGT 2 cut(s) 645, 1322
Hsp92II CATG 6 cut(s) 19, 199, 374, 602, 1535, 1778
HspAI GCGC 1 cut(s) 1517
Ksp22I TGATCA 1 cut(s) 1195
Kzo9I GATC 6 cut(s) 275, 409, 487, 1096, 1120, 1195
LguI GCTCTTC 1 cut(s) 388
LmnI GCTCC 5 cut(s) 7, 145, 265, 659, 1549
Lsp1109I GCAGC 5 cut(s) 367, 773, 1483, 1501, 1506
LweI GCATC 8 cut(s) 748, 974, 1244, 1302, 1350, 1416, 1447, 1662
MabI ACCWGGT 1 cut(s) 1153
MaeI CTAG 3 cut(s) 573, 1497, 1550
MaeII ACGT 2 cut(s) 645, 1322
MaeIII GTNAC 2 cut(s) 1417, 1556
MalI GATC 6 cut(s) 277, 411, 489, 1098, 1122, 1197
MbiI CCGCTC 1 cut(s) 188
MboI GATC 6 cut(s) 275, 409, 487, 1096, 1120, 1195
MboII GAAGA 7 cut(s) 242, 375, 381, 560, 965, 1395, 1697
MfeI CAATTG 1 cut(s) 1664
MflI RGATCY 1 cut(s) 1096
MhlI GDGCHC 3 cut(s) 68, 1072, 1153
MlsI TGGCCA 1 cut(s) 400
MluNI TGGCCA 1 cut(s) 400
MlyI GAGTC 2 cut(s) 128, 329
MmeI TCCRAC 2 cut(s) 1273, 1819
Mox20I TGGCCA 1 cut(s) 400
Mph1103I ATGCAT 1 cut(s) 1237
MscI TGGCCA 1 cut(s) 400
MseI TTAA 5 cut(s) 785, 894, 996, 1040, 1334
MslI CAYNNNNRTG 1 cut(s) 1424
Msp20I TGGCCA 1 cut(s) 400
MspA1I CMGCKG 1 cut(s) 1514
MspI CCGG 6 cut(s) 36, 79, 244, 281, 518, 1466
MspR9I CCNGG 6 cut(s) 79, 807, 899, 1155, 1289, 1467
MunI CAATTG 1 cut(s) 1664
MvaI CCWGG 4 cut(s) 807, 899, 1155, 1289
MvnI CGCG 2 cut(s) 59, 981
NciI CCSGG 2 cut(s) 79, 1467
NcoI CCATGG 1 cut(s) 370
NdeII GATC 6 cut(s) 275, 409, 487, 1096, 1120, 1195
NlaIII CATG 6 cut(s) 19, 199, 374, 602, 1535, 1778
NlaIV GGNNCC 6 cut(s) 147, 522, 1048, 1098, 1293, 1725
NmeAIII GCCGAG 1 cut(s) 237
NmuCI GTSAC 2 cut(s) 1417, 1556
NsiI ATGCAT 1 cut(s) 1237
PagI TCATGA 2 cut(s) 195, 1531
PciSI GCTCTTC 1 cut(s) 388
PfeI GAWTC 3 cut(s) 218, 595, 1205
PflFI GACNNNGTC 1 cut(s) 680
PinAI ACCGGT 1 cut(s) 243
PkrI GCNGC 8 cut(s) 12, 190, 300, 357, 763, 1473, 1516, 1521
PleI GAGTC 2 cut(s) 128, 328
PpsI GAGTC 2 cut(s) 128, 328
PsiI TTATAA 2 cut(s) 1602, 1855
Psp1406I AACGTT 1 cut(s) 1322
Psp6I CCWGG 4 cut(s) 805, 897, 1153, 1287
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 4 cut(s) 805, 897, 1153, 1287
PspN4I GGNNCC 6 cut(s) 147, 522, 1048, 1098, 1293, 1725
PspPI GGNCC 3 cut(s) 246, 291, 1160
PstNI CAGNNNCTG 1 cut(s) 1441
PsuI RGATCY 1 cut(s) 1096
PsyI GACNNNGTC 1 cut(s) 680
PvuII CAGCTG 1 cut(s) 1514
RsaI GTAC 3 cut(s) 534, 867, 1761
RsaNI GTAC 3 cut(s) 533, 866, 1760
RseI CAYNNNNRTG 1 cut(s) 1424
SapI GCTCTTC 1 cut(s) 388
SaqAI TTAA 5 cut(s) 785, 894, 996, 1040, 1334
SatI GCNGC 8 cut(s) 11, 189, 299, 356, 762, 1472, 1515, 1520
Sau3AI GATC 6 cut(s) 275, 409, 487, 1096, 1120, 1195
Sau96I GGNCC 3 cut(s) 246, 291, 1160
SchI GAGTC 2 cut(s) 128, 329
ScrFI CCNGG 6 cut(s) 79, 807, 899, 1155, 1289, 1467
SduI GDGCHC 3 cut(s) 68, 1072, 1153
SexAI ACCWGGT 1 cut(s) 1153
SfaNI GCATC 8 cut(s) 748, 974, 1244, 1302, 1350, 1416, 1447, 1662
SfcI CTRYAG 1 cut(s) 1305
SinI GGWCC 2 cut(s) 246, 1160
SmiMI CAYNNNNRTG 1 cut(s) 1424
SmlI CTYRAG 1 cut(s) 1407
SmoI CTYRAG 1 cut(s) 1407
SsiI CCGC 7 cut(s) 188, 191, 299, 709, 981, 987, 1094
SspI AATATT 1 cut(s) 930
SspMI CTAG 3 cut(s) 573, 1497, 1550
StyD4I CCNGG 6 cut(s) 77, 805, 897, 1153, 1287, 1465
StyI CCWWGG 3 cut(s) 370, 859, 1109
TaaI ACNGT 2 cut(s) 1309, 1350
TaiI ACGT 2 cut(s) 648, 1325
TaqI TCGA 6 cut(s) 137, 159, 408, 465, 684, 1123
TauI GCSGC 2 cut(s) 191, 301
TfiI GAWTC 3 cut(s) 218, 595, 1205
Tru1I TTAA 5 cut(s) 785, 894, 996, 1040, 1334
Tru9I TTAA 5 cut(s) 785, 894, 996, 1040, 1334
TscAI CASTG 4 cut(s) 508, 1012, 1153, 1314
TseFI GTSAC 2 cut(s) 1417, 1556
TseI GCWGC 6 cut(s) 10, 355, 761, 1471, 1514, 1519
Tsp45I GTSAC 2 cut(s) 1417, 1556
TspDTI ATGAA 2 cut(s) 17, 1641
TspGWI ACGGA 6 cut(s) 242, 357, 653, 1152, 1436, 1702
TspRI CASTG 4 cut(s) 508, 1012, 1153, 1314
Tth111I GACNNNGTC 1 cut(s) 680
VneI GTGCAC 2 cut(s) 64, 1149
VpaK11BI GGWCC 2 cut(s) 246, 1160
XapI RAATTY 8 cut(s) 42, 119, 621, 833, 998, 1222, 1254, 1461
XbaI TCTAGA 1 cut(s) 1549
XcmI CCANNNNNNNNNTGG 1 cut(s) 1012
XspI CTAG 3 cut(s) 573, 1497, 1550
Zsp2I ATGCAT 1 cut(s) 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.