Prupe.3G008500_v2.0.a1

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016173
Physical Location & Seq
Forward (+)
518331 .. 524287
5957 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G008500.1

Sequence Viewer

Length: 918 bp
ATGAGGCAGAATCGTGGGACTGGATTTGTGAAGTTTTCCCATAAAGATATGGCTCTGGAAGCAATCAAAGCATTAAATGGAACCTTCATTATGAGAGGTTGTGCTCAGCCGTTAATTGTTCGCTTTGCAGATCCTAAGAAACCGAGGGGAATAGAATCAAGGGGCAATTATTTATTTAGCAACACAAACATTGTTCCCCACTCTCAAGAACCAGTTGTTAGGCCAGTATCTGATCATGGTGATTCCACTGGAGGGTATAATATACATAATGCATCGTATCCTGTTCAACAAGCTTCACACCCGCCTATTTCCCAATTGGCAAACCATGAACCCCAGGCTTCTAGTGTCATACAACCACCATTTCCTCCATCAAAGTCACCTTCACAGTTGTGTAGGATGCCTTTACAACACACACAAATTACGCATTCTCGGACTTCTCAAGTAGAAGTTAATGAGACCCAGAAGCAGCATCTGACGCAACCATCAGGGCAAATTATTGGGCAGCAGCAGAGTTCTCAGACAGTTGCTAGCAATTCTCTCTCAGCGGCAGTTCCTTCAAATCACGAGATAGCAGCTTTCATAGAGTGTGACTGGAGTGAACATAACTGCCCTGATGGATACAAGTATTATTATAATTGTGAAACTTGTGAAAGCAGATGGGACAAGCCTGAGGAGTTTGCCTTATTTGAGCAAGCATTGCAGATGCAGACGCAGCAGCAAAATCCTTCTCACCATCTTAAATCTATGTCGTCGGTTCTTTCTACCCAACATAGTGCTCAAACACAGCAGGTACAGATTCAGACACAGGCCTTCCATCAGACACTACAACTTCAGAAACCTTGCTCATCTGCGCCGGAACTGGATCATGTGCAAATCCAGCCAGAAACAAATCCTGTTGTTGGCCCAACCTGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 WW

Protein Analysis

306

Amino Acids

33.95

Weight (kDa)

6.59

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47310
fragaria_vesca FvH4_1g26970
malus_domestica MD09G1285500.v1.1
prunus_persica Prupe.3G008500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487191
rosa_multiflora Rmu_sc0012751.1_g000001 Rmu_ssc0000366.1_g000028
rosa_roxburghii Rroxscaffold_6G00395040
rosa_rugosa Rorug03G0232100 Rorug03G0232200
rosa_samantha Rh3AG280100 Rh3BG316100 Rh3CG314200 Rh3DG311500
rosa_wichuraiana Rw3G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 633
Acc36I ACCTGC 1 cut(s) 778
AciI CCGC 2 cut(s) 302, 545
AclWI GGATC 2 cut(s) 125, 870
AcuI CTGAAG 1 cut(s) 815
AfaI GTAC 1 cut(s) 792
AfiI CCNNNNNNNGG 2 cut(s) 252, 899
AgsI TTSAA 2 cut(s) 287, 558
AjnI CCWGG 1 cut(s) 333
AleI CACNNNNGTG 1 cut(s) 388
AluBI AGCT 2 cut(s) 293, 575
AluI AGCT 2 cut(s) 293, 575
Alw21I GWGCWC 2 cut(s) 106, 778
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 2 cut(s) 125, 870
AlwNI CAGNNNCTG 2 cut(s) 230, 472
AoxI GGCC 3 cut(s) 221, 807, 901
ApeKI GCWGC 6 cut(s) 466, 502, 505, 572, 712, 715
AspLEI GCGC 1 cut(s) 853
AspS9I GGNCC 1 cut(s) 902
AsuHPI GGTGA 3 cut(s) 251, 369, 722
AsuNHI GCTAGC 1 cut(s) 527
AxyI CCTNAGG 1 cut(s) 669
BauI CACGAG 1 cut(s) 563
Bbv12I GWGCWC 2 cut(s) 106, 778
BbvI GCAGC 6 cut(s) 478, 514, 517, 584, 724, 727
BccI CCATC 6 cut(s) 376, 490, 608, 651, 741, 822
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 335
BciVI GTATCC 2 cut(s) 288, 611
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 2 cut(s) 342, 528
BfuAI ACCTGC 1 cut(s) 778
BfuI GTATCC 2 cut(s) 288, 611
BisI GCNGC 7 cut(s) 467, 503, 506, 546, 573, 713, 716
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 7 cut(s) 468, 504, 507, 547, 574, 714, 717
Bme1390I CCNGG 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 902
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 4 cut(s) 281, 387, 478, 693
BmtI GCTAGC 1 cut(s) 531
BpmI CTGGAG 2 cut(s) 270, 613
Bpu1102I GCTNAGC 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 189, 423
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 143, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 899
Bse1I ACTGG 6 cut(s) 25, 212, 224, 253, 596, 864
Bse21I CCTNAGG 1 cut(s) 669
Bse3DI GCAATG 1 cut(s) 695
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 143, 333
BseGI GGATG 1 cut(s) 402
BseLI CCNNNNNNNGG 2 cut(s) 252, 899
BseMI GCAATG 1 cut(s) 695
BseMII CTCAG 4 cut(s) 119, 530, 555, 660
BseNI ACTGG 6 cut(s) 25, 212, 224, 253, 596, 864
BseRI GAGGAG 1 cut(s) 686
BseXI GCAGC 6 cut(s) 478, 514, 517, 584, 724, 727
BshFI GGCC 3 cut(s) 223, 809, 903
BsiHKAI GWGCWC 2 cut(s) 106, 778
BsiSI CCGG 1 cut(s) 854
BslFI GGGAC 2 cut(s) 31, 674
BslI CCNNNNNNNGG 2 cut(s) 252, 899
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 2 cut(s) 31, 674
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 3 cut(s) 223, 809, 903
Bso31I GGTCTC 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 106, 778
Bsp143I GATC 3 cut(s) 130, 232, 862
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 2 cut(s) 302, 545
BspANI GGCC 3 cut(s) 223, 809, 903
BspCNI CTCAG 4 cut(s) 118, 529, 554, 661
BspLI GGNNCC 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 778
BspOI GCTAGC 1 cut(s) 531
BspPI GGATC 2 cut(s) 125, 870
BspTNI GGTCTC 1 cut(s) 449
BsrDI GCAATG 1 cut(s) 695
BsrI ACTGG 6 cut(s) 25, 212, 224, 253, 596, 864
BssECI CCNNGG 2 cut(s) 143, 333
BssMI GATC 3 cut(s) 130, 232, 862
BssSI CACGAG 1 cut(s) 563
Bst2BI CACGAG 1 cut(s) 563
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 2 cut(s) 387, 523
BstAPI GCANNNNNTGC 1 cut(s) 697
BstC8I GCNNGC 2 cut(s) 529, 693
BstDEI CTNAG 5 cut(s) 105, 135, 516, 541, 669
BstF5I GGATG 1 cut(s) 402
BstHHI GCGC 1 cut(s) 853
BstKTI GATC 3 cut(s) 133, 235, 865
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 3 cut(s) 130, 232, 862
BstMWI GCNNNNNNNGC 6 cut(s) 59, 68, 475, 697, 712, 877
BstNI CCWGG 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 6 cut(s) 478, 514, 517, 584, 724, 727
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
Bsu36I CCTNAGG 1 cut(s) 669
BsuI GTATCC 2 cut(s) 288, 611
BsuRI GGCC 3 cut(s) 223, 809, 903
BtsCI GGATG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 246
BveI ACCTGC 1 cut(s) 778
Cac8I GCNNGC 2 cut(s) 529, 693
CaiI CAGNNNCTG 2 cut(s) 230, 472
CfoI GCGC 1 cut(s) 853
Cfr13I GGNCC 1 cut(s) 902
CseI GACGC 2 cut(s) 484, 718
Csp6I GTAC 1 cut(s) 791
CviAII CATG 3 cut(s) 236, 326, 866
CviQI GTAC 1 cut(s) 791
DdeI CTNAG 5 cut(s) 105, 135, 516, 541, 669
DpnI GATC 3 cut(s) 132, 234, 864
DpnII GATC 3 cut(s) 130, 232, 862
Eco147I AGGCCT 1 cut(s) 809
Eco31I GGTCTC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 815
Eco81I CCTNAGG 1 cut(s) 669
EcoRII CCWGG 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 274
FaeI CATG 3 cut(s) 239, 329, 869
FaqI GGGAC 2 cut(s) 31, 674
FatI CATG 3 cut(s) 235, 325, 865
FauI CCCGC 1 cut(s) 309
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 7 cut(s) 467, 503, 506, 546, 573, 713, 716
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 7 cut(s) 467, 503, 506, 546, 573, 713, 716
FspBI CTAG 2 cut(s) 342, 528
GlaI GCGC 1 cut(s) 852
GluI GCNGC 7 cut(s) 467, 503, 506, 546, 573, 713, 716
GsuI CTGGAG 2 cut(s) 270, 613
HaeIII GGCC 3 cut(s) 223, 809, 903
HapII CCGG 1 cut(s) 854
HgaI GACGC 2 cut(s) 484, 718
HhaI GCGC 1 cut(s) 853
Hin1II CATG 3 cut(s) 239, 329, 869
Hin6I GCGC 1 cut(s) 851
HinP1I GCGC 1 cut(s) 851
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 4 cut(s) 10, 155, 242, 796
HpaII CCGG 1 cut(s) 854
HphI GGTGA 3 cut(s) 251, 369, 722
Hpy166II GTNNAC 1 cut(s) 599
Hpy188I TCNGA 7 cut(s) 232, 432, 474, 519, 801, 819, 834
Hpy188III TCNNGA 3 cut(s) 56, 206, 563
Hpy8I GTNNAC 1 cut(s) 599
Hpy99I CGWCG 1 cut(s) 754
HpyAV CCTTC 5 cut(s) 94, 390, 564, 735, 820
HpyCH4III ACNGT 2 cut(s) 387, 523
HpyCH4V TGCA 5 cut(s) 128, 272, 700, 706, 871
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 68, 475, 697, 712, 877
HpyF3I CTNAG 5 cut(s) 105, 135, 516, 541, 669
Hsp92II CATG 3 cut(s) 239, 329, 869
HspAI GCGC 1 cut(s) 851
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 130, 232, 862
Lsp1109I GCAGC 6 cut(s) 478, 514, 517, 584, 724, 727
LweI GCATC 4 cut(s) 281, 387, 478, 693
MaeI CTAG 2 cut(s) 342, 528
MaeIII GTNAC 2 cut(s) 375, 587
MalI GATC 3 cut(s) 132, 234, 864
MboI GATC 3 cut(s) 130, 232, 862
MfeI CAATTG 1 cut(s) 314
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 2 cut(s) 106, 778
MluCI AATT 7 cut(s) 114, 166, 314, 417, 492, 532, 634
MnlI CCTC 5 cut(s) 89, 138, 245, 375, 664
Mph1103I ATGCAT 1 cut(s) 274
MseI TTAA 4 cut(s) 74, 113, 450, 738
MslI CAYNNNNRTG 1 cut(s) 388
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 1 cut(s) 854
MspR9I CCNGG 1 cut(s) 335
MunI CAATTG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 6 cut(s) 59, 68, 475, 697, 712, 877
NdeII GATC 3 cut(s) 130, 232, 862
NheI GCTAGC 1 cut(s) 527
NlaIII CATG 3 cut(s) 239, 329, 869
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 375, 587
NsiI ATGCAT 1 cut(s) 274
OliI CACNNNNGTG 1 cut(s) 388
PceI AGGCCT 1 cut(s) 809
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 4 cut(s) 10, 155, 242, 796
PkrI GCNGC 7 cut(s) 468, 504, 507, 547, 574, 714, 717
PsiI TTATAA 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 902
PstNI CAGNNNCTG 2 cut(s) 230, 472
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 1 cut(s) 792
RsaNI GTAC 1 cut(s) 791
RseI CAYNNNNRTG 1 cut(s) 388
SaqAI TTAA 4 cut(s) 74, 113, 450, 738
SatI GCNGC 7 cut(s) 467, 503, 506, 546, 573, 713, 716
Sau3AI GATC 3 cut(s) 130, 232, 862
Sau96I GGNCC 1 cut(s) 902
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 2 cut(s) 106, 778
SetI ASST 8 cut(s) 86, 100, 295, 382, 577, 792, 841, 911
SfaNI GCATC 4 cut(s) 281, 387, 478, 693
SmiMI CAYNNNNRTG 1 cut(s) 388
SmlI CTYRAG 2 cut(s) 204, 438
SmoI CTYRAG 2 cut(s) 204, 438
Sse9I AATT 7 cut(s) 114, 166, 314, 417, 492, 532, 634
SseBI AGGCCT 1 cut(s) 809
SsiI CCGC 2 cut(s) 302, 545
SspMI CTAG 2 cut(s) 342, 528
StuI AGGCCT 1 cut(s) 809
StyD4I CCNGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 387, 523
TasI AATT 7 cut(s) 114, 166, 314, 417, 492, 532, 634
TauI GCSGC 1 cut(s) 548
TfiI GAWTC 4 cut(s) 10, 155, 242, 796
Tru1I TTAA 4 cut(s) 74, 113, 450, 738
Tru9I TTAA 4 cut(s) 74, 113, 450, 738
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 2 cut(s) 375, 587
TseI GCWGC 6 cut(s) 466, 502, 505, 572, 712, 715
Tsp45I GTSAC 2 cut(s) 375, 587
TspDTI ATGAA 3 cut(s) 76, 342, 568
TspRI CASTG 1 cut(s) 253
XspI CTAG 2 cut(s) 342, 528
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.