Rh3BG316100

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0016173
Physical Location & Seq
Forward (+)
32334285 .. 32340286
6002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG316100.1

Sequence Viewer

Length: 1257 bp
ATGTTGAAGGATAAGCGGACTGGCTTCCAACAAGGAAATTGTTTCGTGAAGTATTCAACATTAGATGCAGCAGAGAGGGCTATCAGAGCTTTAAATAGTCAGCATTATTTTCCTGGGGAAGCAAACCCTGTCATAGTCAAATTTGCTGACGGGGAAAGGGAACGCCTTGGGGTACAAGACAGATTGTATGTTTGTGGCATTAACCTGGAAGCTTCAAATAAAGACATTGAGGAAATATTTTCACCTTATGGTCTTGTTGAAGATATCTACATTTTGAAGCACAATCGTGGATGCGGGTTTGTTAAATTTTCCAGTGGAGATATGGCTGTGCAAGCAATCAAAGCTTTAAATGGAACCTTTATTATGAGAGTAATGCTTTTCAATTGTTTTCTAATCTTTACCAGTTATCTCATTGTACTTAGAAGATATGTACATTTGATTCCTTTTTCAATATTACTTCAGGGTTGTGCTCAGCCATTGATTGTTCGTTTTGCGGAGCCTAAGAAACCAAGGGAAATAGATCGAAGGGGTAATTATGTATTTAGCAATGCACCTGGTGGTCCGTACTCTCACGAACCAGTTAGGGTAGTATCTGATCATAGTGATTCCATTGGAGGGCAAAATTTTCTAAATGCATCTTATCCTGTCCAACAAATTTCACAACCCCCTATTCCCTATTTGGCAAACCAGGAACCACAGGCTTCTACCGTGATGCAACCAACGTTTCCTCCATTAAGACCACCTTTACAGTTGTGCAGGATGCCTATACAACAAACACAGAATACACAAAGAAGTTCTCAGTCTTCTCAAGTAGCAGTCACGGAGATGCAGAAACAGCATCTGACACAATCATCTGGGCAAATTCTGGGGCAGCAACAGAGTTCTCAGACATTTTCGAGCAATTCTACTTCAGCTGCTCTGCCTTCAAGTCATGAGATAACTGCTCCTCTAGAGTGTGACTGGAGTGAACATACCTGCCCTGATGGATACAAGTATTATTATAATTGTGAAACTTGTGAGAGCAGATGGGACAAACCTGAGGAGTTTGCTTTATTTGAGCAACAATTGCAGATGCAAACACAGCCGAATAATCCTTCTCATCATCTTCAATCCGTGTCATTGGTTCCTTCTACGCAAATAGTTTGTCAAAATCAGCAGGTACATAGTCAGACACATGCCTTCCATCAGATACTCCAACTTCAGAAACCATCCTTGTCTGCATTGTTTGCCTCATTTCAGCATATTATGATTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 WW

Protein Analysis

418

Amino Acids

47.22

Weight (kDa)

6.91

Isoelectric Point (pI)

57.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 62 - 122 1e-12 RNA recognition motif
WW PF00397 317 - 346 8.9e-10 WW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47310
fragaria_vesca FvH4_1g26970
malus_domestica MD09G1285500.v1.1
prunus_persica Prupe.3G008500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487191
rosa_multiflora Rmu_sc0012751.1_g000001 Rmu_ssc0000366.1_g000028
rosa_roxburghii Rroxscaffold_6G00395040
rosa_rugosa Rorug03G0232100 Rorug03G0232200
rosa_samantha Rh3AG280100 Rh3BG316100 Rh3CG314200 Rh3DG311500
rosa_wichuraiana Rw3G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1002, 1255
Acc36I ACCTGC 2 cut(s) 983, 1147
AciI CCGC 3 cut(s) 16, 294, 494
AclI AACGTT 1 cut(s) 722
AcsI RAATTY 5 cut(s) 140, 305, 622, 654, 861
AcuI CTGAAG 3 cut(s) 443, 894, 1184
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 5 cut(s) 174, 417, 432, 566, 1161
AfiI CCNNNNNNNGG 1 cut(s) 615
AgsI TTSAA 9 cut(s) 7, 57, 216, 260, 277, 382, 450, 927, 1109
AjnI CCWGG 4 cut(s) 112, 204, 553, 687
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 4 cut(s) 89, 212, 344, 914
AluI AGCT 4 cut(s) 89, 212, 344, 914
Alw21I GWGCWC 1 cut(s) 472
AlwNI CAGNNNCTG 1 cut(s) 841
ApeKI GCWGC 3 cut(s) 68, 871, 914
ApoI RAATTY 5 cut(s) 140, 305, 622, 654, 861
ArsI GACNNNNNNTTYG 2 cut(s) 1129, 1161
AspS9I GGNCC 1 cut(s) 560
AsuHPI GGTGA 1 cut(s) 234
AvaII GGWCC 1 cut(s) 560
AxyI CCTNAGG 1 cut(s) 1038
BbsI GAAGAC 1 cut(s) 795
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 3 cut(s) 80, 883, 901
BccI CCATC 4 cut(s) 977, 1020, 1191, 1216
BciT130I CCWGG 4 cut(s) 114, 206, 555, 689
BciVI GTATCC 1 cut(s) 980
BclI TGATCA 1 cut(s) 595
BfaI CTAG 1 cut(s) 950
BfuAI ACCTGC 2 cut(s) 983, 1147
BfuI GTATCC 1 cut(s) 980
BisI GCNGC 3 cut(s) 69, 872, 915
BlpI GCTNAGC 1 cut(s) 471
BlsI GCNGC 3 cut(s) 70, 873, 916
Bme1390I CCNGG 4 cut(s) 114, 206, 555, 689
Bme18I GGWCC 1 cut(s) 560
BmgT120I GGNCC 1 cut(s) 560
BmiI GGNNCC 4 cut(s) 355, 498, 693, 1125
BmrFI CCNGG 4 cut(s) 114, 206, 555, 689
BmsI GCATC 8 cut(s) 55, 281, 644, 702, 750, 816, 847, 1062
BpiI GAAGAC 1 cut(s) 795
BpmI CTGGAG 1 cut(s) 982
Bpu1102I GCTNAGC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 792
BsaJI CCNNGG 3 cut(s) 113, 166, 509
BsaXI ACNNNNNCTCC 2 cut(s) 712, 742
Bsc4I CCNNNNNNNGG 1 cut(s) 615
Bse1I ACTGG 5 cut(s) 25, 312, 402, 578, 965
Bse21I CCTNAGG 1 cut(s) 1038
Bse3DI GCAATG 1 cut(s) 553
BseBI CCWGG 4 cut(s) 114, 206, 555, 689
BseDI CCNNGG 3 cut(s) 113, 166, 509
BseGI GGATG 3 cut(s) 296, 765, 1208
BseLI CCNNNNNNNGG 1 cut(s) 615
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 4 cut(s) 485, 812, 899, 1029
BseNI ACTGG 5 cut(s) 25, 312, 402, 578, 965
BseRI GAGGAG 2 cut(s) 936, 1055
BseXI GCAGC 3 cut(s) 80, 883, 901
BsgI GTGCAG 1 cut(s) 775
BsiHKAI GWGCWC 1 cut(s) 472
BslFI GGGAC 1 cut(s) 1043
BslI CCNNNNNNNGG 1 cut(s) 615
BsmFI GGGAC 1 cut(s) 1043
Bsp1286I GDGCHC 1 cut(s) 472
Bsp1407I TGTACA 1 cut(s) 430
Bsp143I GATC 2 cut(s) 520, 595
Bsp1720I GCTNAGC 1 cut(s) 471
BspACI CCGC 3 cut(s) 16, 294, 494
BspCNI CTCAG 4 cut(s) 484, 811, 898, 1030
BspHI TCATGA 1 cut(s) 931
BspLI GGNNCC 4 cut(s) 355, 498, 693, 1125
BspMI ACCTGC 2 cut(s) 983, 1147
BsrDI GCAATG 1 cut(s) 553
BsrGI TGTACA 1 cut(s) 430
BsrI ACTGG 5 cut(s) 25, 312, 402, 578, 965
BssECI CCNNGG 3 cut(s) 113, 166, 509
BssMI GATC 2 cut(s) 520, 595
BssT1I CCWWGG 2 cut(s) 166, 509
Bst2UI CCWGG 4 cut(s) 114, 206, 555, 689
Bst4CI ACNGT 2 cut(s) 709, 750
BstAPI GCANNNNNTGC 2 cut(s) 1066, 1226
BstAUI TGTACA 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 6 cut(s) 419, 471, 501, 798, 885, 1038
BstF5I GGATG 3 cut(s) 296, 765, 1208
BstKTI GATC 2 cut(s) 523, 598
BstMBI GATC 2 cut(s) 520, 595
BstMWI GCNNNNNNNGC 8 cut(s) 77, 86, 332, 341, 835, 1066, 1081, 1226
BstNI CCWGG 4 cut(s) 114, 206, 555, 689
BstNSI RCATGY 1 cut(s) 1178
BstSCI CCNGG 4 cut(s) 112, 204, 553, 687
BstV1I GCAGC 3 cut(s) 80, 883, 901
BstV2I GAAGAC 1 cut(s) 795
Bsu36I CCTNAGG 1 cut(s) 1038
BsuI GTATCC 1 cut(s) 980
BtsCI GGATG 3 cut(s) 296, 765, 1208
BtsIMutI CAGTG 1 cut(s) 319
BveI ACCTGC 2 cut(s) 983, 1147
Cac8I GCNNGC 1 cut(s) 333
CaiI CAGNNNCTG 1 cut(s) 841
CciI TCATGA 1 cut(s) 931
Cfr13I GGNCC 1 cut(s) 560
CsiI ACCWGGT 1 cut(s) 553
Csp6I GTAC 5 cut(s) 173, 416, 431, 565, 1160
CviAII CATG 2 cut(s) 932, 1175
CviQI GTAC 5 cut(s) 173, 416, 431, 565, 1160
DdeI CTNAG 6 cut(s) 419, 471, 501, 798, 885, 1038
DpnI GATC 2 cut(s) 522, 597
DpnII GATC 2 cut(s) 520, 595
DraI TTTAAA 2 cut(s) 93, 348
DraIII CACNNNGTG 1 cut(s) 557
Eco130I CCWWGG 2 cut(s) 166, 509
Eco32I GATATC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 560
Eco57I CTGAAG 3 cut(s) 443, 894, 1184
Eco81I CCTNAGG 1 cut(s) 1038
EcoRII CCWGG 4 cut(s) 112, 204, 553, 687
EcoRV GATATC 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 166, 509
EcoT22I ATGCAT 1 cut(s) 637
ErhI CCWWGG 2 cut(s) 166, 509
FaeI CATG 2 cut(s) 935, 1178
FalI AAGNNNNNCTT 2 cut(s) 727, 759
FaqI GGGAC 1 cut(s) 1043
FatI CATG 2 cut(s) 931, 1174
FauI CCCGC 1 cut(s) 287
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 3 cut(s) 69, 872, 915
FokI GGATG 3 cut(s) 303, 772, 1195
Fsp4HI GCNGC 3 cut(s) 69, 872, 915
FspBI CTAG 1 cut(s) 950
GluI GCNGC 3 cut(s) 69, 872, 915
GsuI CTGGAG 1 cut(s) 982
Hin1II CATG 2 cut(s) 935, 1178
HindIII AAGCTT 2 cut(s) 210, 342
HinfI GANTC 2 cut(s) 439, 605
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 1 cut(s) 968
Hpy188I TCNGA 7 cut(s) 86, 595, 843, 888, 1170, 1188, 1203
Hpy188III TCNNGA 4 cut(s) 46, 572, 932, 950
Hpy8I GTNNAC 1 cut(s) 968
HpyAV CCTTC 5 cut(s) 519, 933, 1104, 1137, 1189
HpyCH4III ACNGT 2 cut(s) 709, 750
HpyCH4IV ACGT 1 cut(s) 722
HpyF10VI GCNNNNNNNGC 8 cut(s) 77, 86, 332, 341, 835, 1066, 1081, 1226
HpyF3I CTNAG 6 cut(s) 419, 471, 501, 798, 885, 1038
HpySE526I ACGT 1 cut(s) 722
Hsp92II CATG 2 cut(s) 935, 1178
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 2 cut(s) 520, 595
LmnI GCTCC 2 cut(s) 496, 949
Lsp1109I GCAGC 3 cut(s) 80, 883, 901
LweI GCATC 8 cut(s) 55, 281, 644, 702, 750, 816, 847, 1062
MabI ACCWGGT 1 cut(s) 553
MaeI CTAG 1 cut(s) 950
MaeII ACGT 1 cut(s) 722
MaeIII GTNAC 2 cut(s) 817, 956
MalI GATC 2 cut(s) 522, 597
MboI GATC 2 cut(s) 520, 595
MboII GAAGA 4 cut(s) 272, 435, 795, 1097
MfeI CAATTG 2 cut(s) 382, 1064
MhlI GDGCHC 1 cut(s) 472
MmeI TCCRAC 3 cut(s) 52, 673, 1219
MnlI CCTC 7 cut(s) 69, 223, 608, 738, 957, 1033, 1240
Mph1103I ATGCAT 1 cut(s) 637
MseI TTAA 5 cut(s) 92, 201, 303, 347, 734
MslI CAYNNNNRTG 2 cut(s) 285, 824
MspA1I CMGCKG 1 cut(s) 914
MspR9I CCNGG 4 cut(s) 114, 206, 555, 689
MunI CAATTG 2 cut(s) 382, 1064
MvaI CCWGG 4 cut(s) 114, 206, 555, 689
MwoI GCNNNNNNNGC 8 cut(s) 77, 86, 332, 341, 835, 1066, 1081, 1226
NdeII GATC 2 cut(s) 520, 595
NlaIII CATG 2 cut(s) 935, 1178
NlaIV GGNNCC 4 cut(s) 355, 498, 693, 1125
NmuCI GTSAC 2 cut(s) 817, 956
NsiI ATGCAT 1 cut(s) 637
NspI RCATGY 1 cut(s) 1178
OliI CACNNNNGTG 1 cut(s) 285
PagI TCATGA 1 cut(s) 931
PfeI GAWTC 2 cut(s) 439, 605
PkrI GCNGC 3 cut(s) 70, 873, 916
PsiI TTATAA 2 cut(s) 1002, 1255
Psp1406I AACGTT 1 cut(s) 722
Psp6I CCWGG 4 cut(s) 112, 204, 553, 687
PspGI CCWGG 4 cut(s) 112, 204, 553, 687
PspN4I GGNNCC 4 cut(s) 355, 498, 693, 1125
PspPI GGNCC 1 cut(s) 560
PstNI CAGNNNCTG 1 cut(s) 841
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 5 cut(s) 174, 417, 432, 566, 1161
RsaNI GTAC 5 cut(s) 173, 416, 431, 565, 1160
RseI CAYNNNNRTG 2 cut(s) 285, 824
SaqAI TTAA 5 cut(s) 92, 201, 303, 347, 734
SatI GCNGC 3 cut(s) 69, 872, 915
Sau3AI GATC 2 cut(s) 520, 595
Sau96I GGNCC 1 cut(s) 560
ScrFI CCNGG 4 cut(s) 114, 206, 555, 689
SduI GDGCHC 1 cut(s) 472
SexAI ACCWGGT 1 cut(s) 553
SfaNI GCATC 8 cut(s) 55, 281, 644, 702, 750, 816, 847, 1062
SinI GGWCC 1 cut(s) 560
SmiMI CAYNNNNRTG 2 cut(s) 285, 824
SmlI CTYRAG 1 cut(s) 807
SmoI CTYRAG 1 cut(s) 807
SsiI CCGC 3 cut(s) 16, 294, 494
SspI AATATT 2 cut(s) 237, 453
SspMI CTAG 1 cut(s) 950
StyD4I CCNGG 4 cut(s) 112, 204, 553, 687
StyI CCWWGG 2 cut(s) 166, 509
TaaI ACNGT 2 cut(s) 709, 750
TaiI ACGT 1 cut(s) 725
TaqI TCGA 2 cut(s) 523, 896
TatI WGTACW 2 cut(s) 415, 430
TfiI GAWTC 2 cut(s) 439, 605
Tru1I TTAA 5 cut(s) 92, 201, 303, 347, 734
Tru9I TTAA 5 cut(s) 92, 201, 303, 347, 734
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 2 cut(s) 817, 956
TseI GCWGC 3 cut(s) 68, 871, 914
Tsp45I GTSAC 2 cut(s) 817, 956
TspGWI ACGGA 3 cut(s) 552, 836, 1102
TspRI CASTG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 560
XapI RAATTY 5 cut(s) 140, 305, 622, 654, 861
XbaI TCTAGA 1 cut(s) 949
XceI RCATGY 1 cut(s) 1178
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XspI CTAG 1 cut(s) 950
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.